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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0591100 |
| Transcript ID | LotjaGi1g1v0591100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56820.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FJT1|FBD29_ARATH Putative FBD-associated F-box protein At5g56820; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0591100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:113093806..113096498) extracted from Lotus japonicus Gifu genome v1.2.
AAACAACATGGAAAACAAGGAGATCTTTATAATAAAGAATTGAATGGAGTTAGTTAGCACACAGTTTTCCAACAAAGTCA TCGAGTGAGTTTGCCTTGAAACTTATCTCTTGGCTTAGCGTGAAGAGCTAGAATCTGATCCAAAAACGTCATCATCCCCC TCCATCCAACCCTTTTATATATATATACCCACCAAACTTCTCATTCTCCTAATTAACATATTCAATCCAATTAATTCAAC CCATAAACCTTTCACTCTCTTCTCTGTTTTCTATCAAACTTTTAGAAATGGAGGGTCTTATTCCTTTTGTTTACAAGTCT ATAATGCAATACAAAAATGACAAAGAAGGTCCTTTGGGATCATGGATCTGTGAGCCTCCTTCATACACATACATGAAACT TCCTGGTGACTCTGATCGGTTTCAAGCCCCTGCTTCATTCTCTGCATCTTTACCATCTTTCAACCCTGCTTCTTCTGCTA CACCTACACAGATCATTGTTTCTTCTGGTGTTCAATCTCCACATCAGAATTTGACACATCGTCGAATCGCAGCATGAACA TGAAGAACTTCTACTCTACGAGACCCCCCTGCAGCAAGTATGTGCCTGAAGAAAACATGAAAAGTGTTAAAGCTTGATTC TTAGTGTCAACTTGGAAGTTCTGAGCGTGTAGAAAACCAAAAGGGTAATAATACACGCTTGGTTAATTGTGGAAATTGTA AATATAGATTTCTGATTTTATTCGTGCTTTATGGCCAAAGGGTCACTTGTACTATGAGTCTCTAGGCAAATCAATAACAA AATGTTTGTGTTTCTTGGCATAAAGTGGTCACAAAAATTTGGAAACTTTGCAAGTTGTAGAATAAACTAAAGCAATTAGT TTGCAGTCAATTGTTTATTTTATTTGGTTTTGTGAGAGTTATTGTGAAAGAGTTGCAATAAGAATTTTTTTTAATCGATT ATATGTTCTCAGGGGAAAAAGATATAGGAATTTATATGGGGAACTAAACTATTCAGCGTTCTCACTAGTACAATAATTTT GTCATTATAGGTACAAATATTTGGGACAAAATGTGCATTAACTTATGATAAACAACCCATCAAAACGCTTCGTCTCAAAG GTAAGCATGCAACAGTCACCAGCCATGTTGAGACATGGTTAAACGCCACAACACTGCGAAATATTGAGAACCTCGAAATA GATTGTTACACTACAGTTTACTTGAACTTGCCATGCAGCATTTTCAGCAGTGCAACCTTTGTTGTTCTCAAGTTGTGTGA CTCGACTTTTATGGAGGATTTTTCTTCTGTCGATCTTCCCTCACTCAAAGCTCTGCATTTGACCGCTGTTAAGTTTTTTA AGCCTCTACATTTAATTGAGCTTCTTAATGGATGTCTCAATCTTGAAAACTTGGAGGCAAAGCACATAAGTTTCGAGGAG TTTGATGCAAAGGAGCGTACAAGTTTTCAGGAGTTTGATGATCATTCATTTAAGGGGAAGGTTAAACCTTTATCGAACTT GGTCAGAGCAGATGTTTCTTTTTCGATGGTAAAAATGCAGAATGTTGTGGATCTTTTTCCTATTGATGAGTTTCTTCGCT TAGAAGAGGTTTGTATTCGGAGTTTGACCTTTGTTTTATTTCTTTGGTGTTATCAATATTTCTGATAATTTCTCTTTACA ACTCTTGCAGTTCAGCGATCCTGTTTTTCCCAATTTAATTCATATGGAGCTTACGTCGGGAGGGAAACCTTTACAATGGA AATCAGTGCTTAATTTCCTCCATCATTCCCCTCAACTTCAAATGTTTGTCCTTCGTGGCCTAATTGCTGCTTCTTTCGAG GATTGGCTGACACCTCCTCGTGTTCCTGAATGCTTTTCTTCAAAGCTAAGAACCTGCTTTCTCACAAAATTTACAGGCAA AAAATCTGAGATGGGATTTTCCAAGTTTGTTTTGCAAAATTCAACAGTGTTAGGTAACATGACAATTTTCTGCTTCTATC GCGTATCTCGTGATGAAAAGAAAATGGCTGAAATCAGAATAGAATTAGACTCATGCCCATGGAGCTCTGCAACTTGTAAA CTTTTACTTAAGTAATTTTGTTAGTAGATCAAAATTATTTCTAGATGACTGCATTTGTATTTATATGACTACAGATAATG TATCTGCTGGTTTTGCTGCTTTTTTTAAGGACATATAATCTGGTGTCTTTGTTGGTACGGTGCTGTGATTTTTTATTTTT TGAATATGTAACAAATTGAAATAGGAATAGATTTTTATTCTAGCTATGTGGATGTGGATGTGTATCCTCGTGAGTCTTAG CCCTATTAATTGACTTCGTAGAGGAGAACTTGTGAGTCAAAGCACTTGAGATTAATTATTTAAGCCTGAAAAATTACTGG TCTAACCGGCCTTGATTAACATGCTCGTATTTAACTGACTTGCTTGTGAGTATTCTACCCACCAGGGTTCTTTTTGCTAG CTGCAGACTCTCCATTTCAACCACCTCTAGCTCCACAATTGATCCATCCCGGCTTACTTATGCTTCAGCCCTTCACATGG TTCTTCCCTCATCCAATTCTGATGGGGAGAATAGCTTTCTAAAGACCCAGCCACCTCAGTGTTTGTTACCTTATTATAGT GGAAACAATACCATGATTAGGATTTTTTTATGGTTGTGACTTCTGAAGTATAA
CDS sequence (LotjaGi1g1v0591100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGATTTTTCTTCTGTCGATCTTCCCTCACTCAAAGCTCTGCATTTGACCGCTGTTAAGTTTTTTAAGCCTCTACA TTTAATTGAGCTTCTTAATGGATGTCTCAATCTTGAAAACTTGGAGGCAAAGCACATAAGTTTCGAGGAGTTTGATGCAA AGGAGCGTACAAGTTTTCAGGAGTTTGATGATCATTCATTTAAGGGGAAGGTTAAACCTTTATCGAACTTGGTCAGAGCA GATGTTTCTTTTTCGATGGTAAAAATGCAGAATGTTGTGGATCTTTTTCCTATTGATGAGTTTCTTCGCTTAGAAGAGTT CAGCGATCCTGTTTTTCCCAATTTAATTCATATGGAGCTTACGTCGGGAGGGAAACCTTTACAATGGAAATCAGTGCTTA ATTTCCTCCATCATTCCCCTCAACTTCAAATGTTTGTCCTTCGTGGCCTAATTGCTGCTTCTTTCGAGGATTGGCTGACA CCTCCTCGTGTTCCTGAATGCTTTTCTTCAAAGCTAAGAACCTGCTTTCTCACAAAATTTACAGGCAAAAAATCTGAGAT GGGATTTTCCAAGTTTGTTTTGCAAAATTCAACAGTGTTAGGTAACATGACAATTTTCTGCTTCTATCGCGTATCTCGTG ATGAAAAGAAAATGGCTGAAATCAGAATAGAATTAGACTCATGCCCATGGAGCTCTGCAACTTGTAAACTTTTACTTAAG TAA
Protein sequence (LotjaGi1g1v0591100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDFSSVDLPSLKALHLTAVKFFKPLHLIELLNGCLNLENLEAKHISFEEFDAKERTSFQEFDDHSFKGKVKPLSNLVRA DVSFSMVKMQNVVDLFPIDEFLRLEEFSDPVFPNLIHMELTSGGKPLQWKSVLNFLHHSPQLQMFVLRGLIAASFEDWLT PPRVPECFSSKLRTCFLTKFTGKKSEMGFSKFVLQNSTVLGNMTIFCFYRVSRDEKKMAEIRIELDSCPWSSATCKLLLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 237 | 232 | 1.4E-38 | – | |
| PANTHER | 6 | 237 | 232 | 1.4E-38 | – | |
| Pfam | 164 | 205 | 42 | 2.5E-12 | ||
| SMART | 166 | 240 | 75 | 0.0016 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0591100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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