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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0600800 |
| Transcript ID | LotjaGi1g1v0600800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger protein; TAIR: AT3G60520.1 zinc ion-binding protein; Swiss-Prot: sp|Q8VDY4|EFCB7_MOUSE EF-hand calcium-binding domain-containing protein 7; TrEMBL-Plants: tr|A0A151SFZ5|A0A151SFZ5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0600800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114558200..114559721) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTACATCATTTAAGGTACCATACCCTCATTTAAATTAAGGTACCACAGCAAGCACCGGTGTCAAGAAAATATTATTA GAAAATAAATTAAAAAGTACACACTGTGCTGTGCTGCTCATCTTTCCCTATATAAAGTACTAACTCTCTATCTCTCCACT TTCTCTCTTTCCTATTTGGTTTTCTCTCTTACCTCGGCGATCACATTCTCTCTTGTTTCTGTGTGTGTTCTCAACCTTTC ACTTCTCTCTATCTCTCTCTCTCACCTTCCAAATCCACCCTTTAATTTAGTCGCACAGCAAAACAATGGTGGATCTTCAA ACAGTTTGCTGCATGTGTGGTGATGTTGGGTTCCGTGACAAGCTTTTCCGCTGCAACAAATGCCGCCATCGCGTTCAGCA CTCGTATGCTTTCTTCCCTTTCTCCTCCTATTAATCATTCACTTTTCCATACCAAATCACACACATACATACATAATATA CATCATGTATGTACATGATCATGTTCACATACATACATACATCCACTCCAATCTTTCTCTATCATACTAGAAACATCTTT AATTTGATAGACACAAAACAACTATAACATACCCATCATCATAAAATACACAAGGCTCTTGTTCATGATCATGTCCAAGT TATTCAATTAAGCTATGATATATACGTAGATACCAAACAGTACAAACATCCGCACATGTAGTTAATTTTTCTCTTTATTT TTCATATTTTATCACGTTTATCATTTCTTTTTCTTCACTTCTTTTCTCACTTATGATAAATATAATTGAGTGTTTACCCA CCATTTTTCCCAAACTATTTATGCTTACTTTTATGTTCATACATGGCTTTCATACATATTTTATGATTTTTTAATAATTT CTTATGAGCTTAGTTTACTTAATGATTTTTCCAGGTATTGTAGCAACTACTACGGAGAATTACCAGAGATAGAACTGTGC GATTGGTGTCAAAGTGAGGAGAAGAGCTCAAGACATGTAGGCTCCAATTCAAAGAAATCGGTCCCCGGAATCGAGACCGG AACCACCATCCGTTCTGAATATTCCGGAGAGAAAATGATCAAGCAGCAGCAGCATGATCGTGAAGAGGGCGGCTCTGAGA AGGGGAAGAGTCCCGCGCCGTCGCCGCGGCCGGGTGCACGCAGGTACAAGCTTCTCAAGGATGTAATGTGTTAGAGGGAT CAAGAACAAAGCGACGTCGTCTAAGCCAAATAAAGAAGAAGAAGAAGAGAGGAAAAACCAATAGGGTAGGGTGACTTTGG AGTTAAGAAGATGTTTTAGTTTGTGTTTGTTAATAGTAGCGTGTAGTAGCTTTGCAAATTAAAGAGTGTGTTGTTTTCTT GAAGTGTGTTCTTCTTTCAACTTCTTTCGTTTTTGAGTGGCTTTTCAGCAAGTTGTGAATAAAACTATGTAACTTTAATA TCATCTAATCTATCATGGCCTAAAGTTTTAGGCTCTAATCCCCACTTCTTTTATATTTGGCCTATTAATTTTTTGTTTCT TC
CDS sequence (LotjaGi1g1v0600800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGATCTTCAAACAGTTTGCTGCATGTGTGGTGATGTTGGGTTCCGTGACAAGCTTTTCCGCTGCAACAAATGCCG CCATCGCGTTCAGCACTCGTATTGTAGCAACTACTACGGAGAATTACCAGAGATAGAACTGTGCGATTGGTGTCAAAGTG AGGAGAAGAGCTCAAGACATGTAGGCTCCAATTCAAAGAAATCGGTCCCCGGAATCGAGACCGGAACCACCATCCGTTCT GAATATTCCGGAGAGAAAATGATCAAGCAGCAGCAGCATGATCGTGAAGAGGGCGGCTCTGAGAAGGGGAAGAGTCCCGC GCCGTCGCCGCGGCCGGGTGCACGCAGGTACAAGCTTCTCAAGGATGTAATGTGTTAG
Protein sequence (LotjaGi1g1v0600800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVDLQTVCCMCGDVGFRDKLFRCNKCRHRVQHSYCSNYYGELPEIELCDWCQSEEKSSRHVGSNSKKSVPGIETGTTIRS EYSGEKMIKQQQHDREEGGSEKGKSPAPSPRPGARRYKLLKDVMC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 125 | 125 | 3.1E-73 | – | |
| PANTHER | 1 | 125 | 125 | 3.1E-73 | – | |
| MobiDBLite | 59 | 125 | 67 | - | – | |
| MobiDBLite | 63 | 85 | 23 | - | – | |
| MobiDBLite | 86 | 102 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0600800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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