Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0602400 |
| Transcript ID | LotjaGi1g1v0602400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT3G60670.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P87118|IPYR2_SCHPO Putative inorganic pyrophosphatase C3A12.02; TrEMBL-Plants: tr|V7B5E6|V7B5E6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0602400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114729319..114731347) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAATTGTGGCTACCCCGTTCCCTCACCATATCATATATCCCTTCCTTCTTTCATTGGAAACAGTAATATTTCTATCT CACCTGCCAGGCGCCGTTCCCCTTTCTTCTTACCTATCTACACTCTCTCTCTCTCTCTCTTCCTTTTACAAAATCCAGTT TTTACTCACTCTTCTTCTTCACCCTAGCCACACAAAATTATTGACCCAATTTTTTCTCCTTCCACACAAACAAAAACTCA TACACTCACTACCAACACATCAAAAAATTCAAGTCACACAATATAGAACACAATCATGGTGGGTCTTTAAATTTCTTCAA CTTTTCATACTACTAACACAACAAAATTCAATTTTATTGATTGTTTGTGTGTAGAGTTAATTTAATTCTAGTTCCCTCAA AATTCTTACTAGCCATGTTGCAACTTTGATCTTCATCATGGTGCATATGGTCCTTAATTTACTTGTTTTTTTATTCAATT TTTTTGACCTCTTAGTCTAATTCATGTTCATACAGTTTATTTCTTCACCAAATGTTCCTCGCTGGCTTCAAGTCCTCCTC ACTGAGAAGTTCTACAACGCTTGCATAATTCATGAAGAGGCAAGGAAGAATGAAAAGAACGTGTACTGTTTGGATTGTTG CATCAGTCTCTGCCCTCACTGTTTGGACCCTCATCGCTCACACAGACTCTTGCAGGTTCTTGCTTAATTTTTCTCAATTT CAACCAAGATACAACAAATTCATGCCAATAAACCTCAAACCTCACTTCACATCACATGTTTCTGAATTGGGTTTGTGTGC AATTTTTCCTTTTCAGATTAGAAGATATGTCTACAATGATGTTATAAAGTTGGATGATGCTACCAAGTTAATTGACTGCA CTCTTGTTCAAGTAAGTGAACTTTTTTTTTTCAATTGAACAAGGATTTCTCAAATTACAACACAAAGCAATTGAACTTCT TGTCAATTGAAATTTAGCTCTCTTTTTGTCACAAAATTTCTATCAATTGACCTCTAGAACAACTTGCAATGTTACAATTT GGGTTTGTTTTTTGTAAATACTAAGGATTGCAAAATCAAAAGAACACATGAGTGATGAGACTATTGAATTGCATATTCAA TTTCAATATGGTACTATTTTTTCTCTCTTGTGATTCTTCTCAAGTTTTTCTCTTTTTCACTCACTTTTCAGTCCTACACC ACCAACAGTGCAAAAGTGGTATTTCTACACGAAAGGCCACATCCAAAGAACAACAGTTTGAGAGGCTCCGGCAATTTCTG CACCACCTGTGACAGAAGCTTGCAAGACCCATATCAATTCTGCTCTCTCTCTTGCAAGGTGCTTCAATTTTCCTTCTGGG TTTTCTTCCTCTATTGATTTTCCTTCACCTGGTGAAAATGCTGTGTTTGTTTTACAGATCAACCACCTGGTGAAAACAGC GGCGGGTTCAATCTCCGGCCACCTGTTCGAGTGCAACTACATGGCGTTGCCGGAGACTGGCTCCGACGACGGTCTGATGA CCCCTGACACGGTGCTTGAACCGGCTGGTTCAGCCCGCACGTCGTCTGGTTCCGGCGGGTATGGTGGTGCGGTGGTGGAT TGCATGGCGGCACTGGCTTGCACCGCCACCACTGAGGTCGTGAGGAAGAAGAGAACCAGCTGTTCCACTTTCAGGCCGCC GTGCCGTCCGGCGTGCTCCCCGGTGTCGGAAATGGCGGAAATCTCGGCGGCGCTGATGAACCGGAGGAAAGGGAATCCTC AGAGGGCCCCACTGTATTAGAAATGAAGAAAATCTCCAAAAAAAAGAGAAACTTTTGGTATTTTATAATTTATAATTAAA TTATTAATTACTAATATTCTAAATATTATTAGGAAGTTTAGATCTTGGGTAATGGGTGGGTACTAATTATTATTATACCA TACATGGAAGAAAAAGTTCCAAGTTTTTTTTGTAGATTTTCACCCTGTTATGTCATGTATTGCCCCTGGTTTCTTGGATT ACAATGTAGTATTAATGGTTTATTATGAC
CDS sequence (LotjaGi1g1v0602400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTATTTCTTCACCAAATGTTCCTCGCTGGCTTCAAGTCCTCCTCACTGAGAAGTTCTACAACGCTTGCATAATTCA TGAAGAGGCAAGGAAGAATGAAAAGAACGTGTACTGTTTGGATTGTTGCATCAGTCTCTGCCCTCACTGTTTGGACCCTC ATCGCTCACACAGACTCTTGCAGATTAGAAGATATGTCTACAATGATGTTATAAAGTTGGATGATGCTACCAAGTTAATT GACTGCACTCTTGTTCAATCCTACACCACCAACAGTGCAAAAGTGGTATTTCTACACGAAAGGCCACATCCAAAGAACAA CAGTTTGAGAGGCTCCGGCAATTTCTGCACCACCTGTGACAGAAGCTTGCAAGACCCATATCAATTCTGCTCTCTCTCTT GCAAGATCAACCACCTGGTGAAAACAGCGGCGGGTTCAATCTCCGGCCACCTGTTCGAGTGCAACTACATGGCGTTGCCG GAGACTGGCTCCGACGACGGTCTGATGACCCCTGACACGGTGCTTGAACCGGCTGGTTCAGCCCGCACGTCGTCTGGTTC CGGCGGGTATGGTGGTGCGGTGGTGGATTGCATGGCGGCACTGGCTTGCACCGCCACCACTGAGGTCGTGAGGAAGAAGA GAACCAGCTGTTCCACTTTCAGGCCGCCGTGCCGTCCGGCGTGCTCCCCGGTGTCGGAAATGGCGGAAATCTCGGCGGCG CTGATGAACCGGAGGAAAGGGAATCCTCAGAGGGCCCCACTGTATTAG
Protein sequence (LotjaGi1g1v0602400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFISSPNVPRWLQVLLTEKFYNACIIHEEARKNEKNVYCLDCCISLCPHCLDPHRSHRLLQIRRYVYNDVIKLDDATKLI DCTLVQSYTTNSAKVVFLHERPHPKNNSLRGSGNFCTTCDRSLQDPYQFCSLSCKINHLVKTAAGSISGHLFECNYMALP ETGSDDGLMTPDTVLEPAGSARTSSGSGGYGGAVVDCMAALACTATTEVVRKKRTSCSTFRPPCRPACSPVSEMAEISAA LMNRRKGNPQRAPLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 255 | 251 | 6.9E-95 | – | |
| PANTHER | 5 | 255 | 251 | 6.9E-95 | – | |
| ProSiteProfiles | 19 | 62 | 44 | 8.717 | ||
| Pfam | 63 | 136 | 74 | 1.8E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0602400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…