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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0603600 |
| Transcript ID | LotjaGi1g1v0603600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ketol-acid reductoisomerase (NADP(+)); TAIR: AT2G37400.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|P46531|NOTC1_HUMAN Neurogenic locus notch homolog protein 1; TrEMBL-Plants: tr|G7LIV2|G7LIV2_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0603600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:114843223..114847475) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGTAAAACACGAATAATGAAAGGGTTTAACAACTTCAATCCAATTGTTTTCTCAAAGAGACAAAGGGAAATACTAAC TCCTTTGTAAACCAACCATAGTGAAAGAGGGAGACACAAACCCTTGTTTGCTTTGAGAATAGAGAACCTTTGACATTCAA TTTTCCAAAACACAACACCATCATCCATCATCAATGGAGGCCCTGTCTAGTCTTCACCACAGTCACCAACCTCAATGCTC CTCCATCCACTACCATTCTCCTTCTCCTTCCATCTCTCCTTCTCTTTTCCTCTCACAACCTTCATCACCTTCACCTTCCA TTAGAGCTTCATCATCATCACTATCATCATCATCATCATCATCACCTCCTTCTGATTCTCCTGTGCAAAATCTCCAATAC CCAGAACCCAAAACTCCACAAATTTTCAACCCTCTTCCCAAACTTCCCTCCTTTGACCCTCCTATCCAATACCCAGAAGC CAAATCTTCTCATATTTTCAACACTCTTCGTAAACTTCCCTCCTTTGCAACCATAACTGCTGCATCAGCGTTTCTCATTC TGGGGTTTTGTCAAAAGGGTTTTACCAGCAAGGCGTTACCATCATCACTGTCCTCTGTGGTTTCCATTCAGGAAGAATTA CTGGATGAGAAGACTGACATTGGAGATTTTCTTGGAAGTAAACCAGATCATGGTCATTCTGTTCTGCTCTTGAAGCTCAA AGAGAGAGTCCCTGTTGTGCACAGTTTTGATAAAATGAAATCTGATGATGAAGAAGCTTGGCAAGTGTTGAAAGCACAAG TTTTTAGCTGCAGTGAGAAGTTGGAGCTTGTGAAGGTTGGATTTGAAGAGATATTGGAGAATGACCAGGATTGTCACAGG GCTCATCATGATTGTATATTTGAGTATCTGGAAATGGTTGATAAATGTACCAACTTGTTGAAGGGTATTAAGGTTGCAAT AAGTAGATGTGAGAGGCAGAATGCAGATATAAGGAGTTACCTTAGATTCTTCAGTAAGGTTCTTGCTCGTATAAGGGTCT TCGAGAGAGACATGGTTGGTGCTTTGAAGTATTATAAGGAGCTTGTGCAGGAGTAAGGGAAGTTTGTCCAAAGGAATAAT GCTCTTTAGTTCGTGTCTGCTGATTAAAACGAATGCTTAACCTGTTGATCAACAAGAAGGTATTTGAGGCTTCTATTCAA TTTTCGGTTCATGGTTTACTATGACTTTTGTATTATCTTATAATCATGAAATATCTGTTTATTAGGATGAGAAACTCTAC TGAGTAGACATATTCTGGCTGAAGGATTGGGCTGAGTCCTAAGTTCATGTATATATAATTAGGAATTGAACACTAATAAA TTTTCCTAGAGATTTTAATTATGTTTCTTGATTACACACCGTTTACTGTTACATGCCCTTTGGGCCTAGTGGGGTGAGAT ATTTTTCATGCATATATATTTTAGAATTGAGCAATCACAAAGATGATTGGTTTTTCCAATTTTTATTTACATTGATTTTT CTGCTTATGTAACTGGTTGGATATTACACGTTTTGAAATATTGGTATGCTTTTTCTGATTTTAAGAAATGTGGGAAGCAA ATTATATGTTGCAGATTTTCCCTGTGTGCTTTTTGATGATTGCTGTATTGTTCGTATACAAATAAATTTTAGTATTTTAC CATGATTAATTGATGAATAAATTTTCTTCCCTAGTTGGGATATTGATATCAGTTTTGTGCAAAATATCTGCAATAGCTAC TGAAGGTAAAACTATGCATTTTTGTAGTTTTGAAACAATAATAATGAGCCTAAGTCAGGAAATCTCAAGCCAGAATTTAC TTCTGTGAAGGAGAATGTGCCTTTTTAAGATTTCGAATATGTACTTGCAGCATGCCCCTAATGATCCGTACCTTGTCCCT TAGATTGTTGTTCAACAAAGTTTCAGGATACAATATCAGTTTGCAGTTGGCAATGTTTCTTTCTCTACCTTGGCCATAGC TGGCATTGATCAATCACAGTTAATTGTGCTCCAGTTTACATGAGTGCAGGGCTGTTAGAGATTTTAGATATTATTTTTGG GATGGCTGGATAGGTGTTTTTCTGACATGATAGGAACTATTATTAGTGGCTTACTTTTGCGGCTTTGCTACAATAAAGCA TGATATATATTTTTTGTTTCCTTAGCTGAATTTAAGTTTGTCATATGTTTATCCATGTACATAACATATTATGCAAATAT AGTCTGTAGTAAAAAAGAGGTGTTCCTAGCCTTTGTTTTAGTCTCGAAATAAGTTAAAGAGATCCCTTGTTTAGTAGTAA TTATAATAATAGTAACTCTTCAAAGGTTCCTTTCTACTTGATTGAGTTATTTCTTAGAGGAAAAGTAAATACTTCTGTAA GGTTGTTAATGTATAGTAGTTAGTTTGTATAAAGTGATAAGGTAGTTTGGGCTTAATGCCAAGTTCTAAGATGTATATAT ATGTTGGTCTCTTGTCAAGAAACAACAATGAATTTATTTAAGTCCTTTGAACTTTCTTTCTACATGGTATCTAGAGCTCG AATTTAGGTATTTTGGCTCTTTTTCTGGCGACCCCCTTTTTTTACTGGCGACCTTTCTGACGACCTTTTCAGACCAGTGT CCGTTTCTGTCACCTTCGGTGTTGTTCAGTTCGCCTTGCTGTCACCATTCCAGCGCCGCTAGAATAACCACCGCCAATCT CCGGAAAACAGCCTGCCAGTTTCTCTTCTTTTTGCTAGATCCCAATCTCTTCGGTGAGAGTTACTTTCACCGCTACCACC ATTGGGGTTGCCTCTTTCCGGCAATCCAGATCTGCCACCTCCCGTCACTGCCAACCTCTGCTGGCCACCATTGTCGCCAC CACCAATTTATTTCTTCTTGGTTGTTTTTATGCCAGGATTCCACTTTTGTGGTCCATTTTCCTTTCTTTCCTTCTGTTTT CAGGTTTGTGGCCATCTAGCATCTCTTTCCTCTTCTCATGGCCAATACAGGAAAGTCAGAGCCTTTTTCTACGACTTTCA TTTCCAACGATAGCTATTGCAACAGAATAAATGGTGGGTTCCTCCAACTATCTCTTATGGTCCAAAGCTGTTGAGAAGTG GTGCATTGGACAAGACTTAAAAAGATCATCTCATATCTAAGCTTGGGGATGTCAAGATTGATAAGGAAATTTGGTAGAAG AATGATGCACTACTGTGTACTATGTTGTGTTAGTTTATAGGTGTAGATTCTTCTTTTCATAATATCTATACTGGTTTTGA TACTTGTTGTGAGTGATGGTCCTAGGCTAAGGCTCTTTACACCAATGGTATCAGTGCTGTATTCTGTTGTTGATGAGCTA ATTAATATTTTCCAACATAGCATGGAAGTTCCTCATTTTGTGGGGCATGTTTCTTCTCTTAAGCCTTAATTTAATACTCT CTTACCTTAGGAAGGAGCTCTCTTTGAAGAATAGAACTAGACTCTTCAATAAGTATGTCAGTTTTGTTTTCATCACCAAA CCTCATCTTCTTTGAAAAAAAGTCCTTCATGAACTTGACATAGTTAGGTATTTTTCACTCCAATGCTTCCGAGAATAAAA TGTTGTTTTACAGCTTCTTGAACATCTCCATGAACTTAGAGAATTGCTTCTCCATATTCTTTTTCAACAACACATTTGGA AAGGGTACCTTTGCATATTTCTCAAGAGATATTAGTTTTCTTTTCTTCTCTCTGTATTTTAATTCTTTCTTTTTCTCATA TTTACTCTTATTCTTTTCATCAATTTTTTTTTTCACTCTAATTTTTTACTTGTTCATCATCTTTTGACCTTTCTAAAAAA TTCCTTTTTCTGTCCTCCTTCATCTACAACCCTCTTTCTTTGTGGCTCCTCGATCTTTTTACCCCTCCTCAATTCTACTG CCTTACAATATTCCCTGGAATAGGTAACTGAGTCACTTGGAAATGAACCTTGAGGTCTCTTCTGCTTGATGGTCCTTGAT TAGATTTCCCTTGACCTCTTCAAGAGAAATTGGGATGATTCTACTCGATTACCTTAGCTATCATTTTCATTCCTCTGCAT TGGACATTTTCATGTGGTCAATTGCAAAAGTCACATTTCAATGTAGGAGGAGTTTCCACGGCTTTTATTTCTTACCAATT TTTGTATCCTTAGCTGGTTCTTCAGTTTTTTGTGAAAATACATTTTCGATTACTTTTAGCAATTGGCATATTTTTTCGTT GTCATTGCCAAAT
CDS sequence (LotjaGi1g1v0603600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCCCTGTCTAGTCTTCACCACAGTCACCAACCTCAATGCTCCTCCATCCACTACCATTCTCCTTCTCCTTCCAT CTCTCCTTCTCTTTTCCTCTCACAACCTTCATCACCTTCACCTTCCATTAGAGCTTCATCATCATCACTATCATCATCAT CATCATCATCACCTCCTTCTGATTCTCCTGTGCAAAATCTCCAATACCCAGAACCCAAAACTCCACAAATTTTCAACCCT CTTCCCAAACTTCCCTCCTTTGACCCTCCTATCCAATACCCAGAAGCCAAATCTTCTCATATTTTCAACACTCTTCGTAA ACTTCCCTCCTTTGCAACCATAACTGCTGCATCAGCGTTTCTCATTCTGGGGTTTTGTCAAAAGGGTTTTACCAGCAAGG CGTTACCATCATCACTGTCCTCTGTGGTTTCCATTCAGGAAGAATTACTGGATGAGAAGACTGACATTGGAGATTTTCTT GGAAGTAAACCAGATCATGGTCATTCTGTTCTGCTCTTGAAGCTCAAAGAGAGAGTCCCTGTTGTGCACAGTTTTGATAA AATGAAATCTGATGATGAAGAAGCTTGGCAAGTGTTGAAAGCACAAGTTTTTAGCTGCAGTGAGAAGTTGGAGCTTGTGA AGGTTGGATTTGAAGAGATATTGGAGAATGACCAGGATTGTCACAGGGCTCATCATGATTGTATATTTGAGTATCTGGAA ATGGTTGATAAATGTACCAACTTGTTGAAGGGTATTAAGGTTGCAATAAGTAGATGTGAGAGGCAGAATGCAGATATAAG GAGTTACCTTAGATTCTTCAGTAAGGTTCTTGCTCGTATAAGGGTCTTCGAGAGAGACATGGTTGGTGCTTTGAAGTATT ATAAGGAGCTTGTGCAGGAGTAA
Protein sequence (LotjaGi1g1v0603600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEALSSLHHSHQPQCSSIHYHSPSPSISPSLFLSQPSSPSPSIRASSSSLSSSSSSSPPSDSPVQNLQYPEPKTPQIFNP LPKLPSFDPPIQYPEAKSSHIFNTLRKLPSFATITAASAFLILGFCQKGFTSKALPSSLSSVVSIQEELLDEKTDIGDFL GSKPDHGHSVLLLKLKERVPVVHSFDKMKSDDEEAWQVLKAQVFSCSEKLELVKVGFEEILENDQDCHRAHHDCIFEYLE MVDKCTNLLKGIKVAISRCERQNADIRSYLRFFSKVLARIRVFERDMVGALKYYKELVQE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 75 | 75 | - | – | |
| MobiDBLite | 7 | 73 | 67 | - | – | |
| PANTHER | 86 | 297 | 212 | 5.5E-76 | – | |
| PANTHER | 86 | 297 | 212 | 5.5E-76 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0603600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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