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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0613600 |
| Transcript ID | LotjaGi1g1v0613600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Surfeit locus protein 2; TAIR: AT5G40570.1 Surfeit locus protein 2 (SURF2); Swiss-Prot: sp|P09926|SURF2_MOUSE Surfeit locus protein 2; TrEMBL-Plants: tr|A0A0S3RKM8|A0A0S3RKM8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0613600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115942856..115946123) extracted from Lotus japonicus Gifu genome v1.2.
AACCTAATTCCTAATTTTTGGCTTCTCAGCAGTTCACTCCTTCACCATCCCCAAGCTTCTTACACCTCACTGCTCTTCCC TGTTCATTGGATTTCTCCATTCTTCTGCAACAGCATCGCAGGTTCGAAAATGGCCACCACCGAAGAGCCACCGAAGAAGG AAGGAAGCAACCTCCTCGGCTCGCCGACCTTCACAGAGCTCGAAAATGGGCGCTTCAAGTGCGTAGAGACAGGCCACGAG GTTCTCTCCAAGGACATACCCTCCTACTCCAACAGCAAGAAGTGCCGTTTGGGTCTCATCGATTTCGCTTTGTCCAATCA CAAACCCCCTCTCAATATGTTCAACCAAGACCCTCTTTACCGGTAAAAATACTGCTACCTTTGATTTCACATTTCCTGTG ATTAGAAGTGATAATGGAAGATTTTTTTGCTGACAAAAGTTGATTTGCTTCATGGGTATGTGATGGTTTAGCTATTTGTT GCTGTTTTTTCAGTTCAAAGTTGATTTGTAAGCTAACTGGAGATAATGTCAATAAGTCAGAGGAACATATCTGGAAGCAT ATGAGTGGGAAAAGGTTTCTCAATAAATTAGGTTTGTAATTTTGATTTATTGTGTTCTATTGGCCTACTTTGGATTGGAA TAAAGTTGTTGATTAAGTCATGTAGTGAGTGTGTATGGATTTTTGCGGAGTTTCGTGACCTGATGCGTTTTAGCTGCTGT GATATAAACAGAGCAGCAGGAAGAGGGGAAGCTGTCGTGTCATGATGGAATGGAAGGTGAGGAGGAGAGCTTAGAGGAGC CACTGAGTGCAAATGGTGGTCAGAAGGATAAAAGGAAGAACAAGAAGAAGACGAAAAAGGGGAAGAATAAGGACAAGGGA GTTGAAGAGATTATTTCTGAAGTTCGAAAGTCTTCTAATGAGGAGAGTGATGCAGAAGAGGATGATTTCTGGATGCCTCC TGTTGGAGAGCGCTGGGACTATGATGATGGACGAGACCGCTGGGGTTCGGATTTGGAGTCAGAGGAGGAAACTGAAGAGG GAGATGTAATTGGTATGTATATTCTCGTTTTTTGCTCAGCTCACATGAGATTTAGTGTTGAAAATTTAAAATAGCTAAAC CTGATACTGATATTGAGGAATACTTTGAATATTGAAACAAGCGCATAAAGAAGAAAGGAAGAAAGTAGGAATCCAGAATC ATGACTTATATTCATTTTCTTATTAGAAACTGTGATAGGTAGATGCAAGTGCTTAGCTTTTTAGCTGTTGGATATTTTTA TTATGACAAAGATATAAGGATTATCATGAAACTCTGAGTTATTAAGTTTTTGTGCCAATGGAAAGTTCAGTCTGGTCAAG TGTGTTCATTACATGTGGATTTTATTAGATCTAATACGTGTTCCGTATTGCAATTAGGAGTGGAAGTATTGATCTCTTTG ACTCTTTTATGGTTCCTTATTTGTCTTGTATTAGAAAAATTAACCAGGTAGGTGTCACTTTACTTGTAGATGGTGCTGCT GATGAGGATTGCAAGGAGTCAGAAGAGTTGTCCTCGAGGTATTTTCTATCAATATGAAATACATGGAATGAAATAGCTTC TAATTATTTAGGCCAAATCTATAGAAGAATGTCTGATTTTCCATATTATCTAAGATATATGTTGAGTTTCTTTTTCCCTA TATCTCACAGGACAAAAAGAATGTCTATAGAAGTTGGGCCAAGCAGCTTTGCCTCAAGAAAAAAGAAAAGTAAGAAGAAT CACCAAACTTGATATAAGTTGATAAGTCCAGTTCAGTTGATCAGAAATGTGTGCAGGACAGAAGTTTTGAAGTTCCTCAA TTAAGTTATTTCAGGTCAGGTTATGCGGATTATGATACAAAGTGGATCTCAGTACAAATACATTTTCCAGATAGATTGTT TGTTGTATCGATAAGCTGTTTTCTCAGCAGATTTATGTGAGAGAAGCATGAAATAGTTAACTTTTAAGTCATCAACAATT CAACATGCAGTCCAATCCAAGGTCATTTTTTGTTTTATTGTAGTCTGTAGTTTATGATTCCTGGCTCAACCCCAATCTTC ACTAATTTATGAAGTTAATGAGTTTTAATATTTTTGTGAACGGTTAAGCAGTTTTTTAGTGATTTTACCTCTATTTCTGC AATAATAATCCTTTTCAAGTACTATGGAATTATTTGACAATATCACATTGGGAAATTTATATTGCTTCGGCCAACAACGC CTACGTACAATGCCTAAACATAGGTAGTATTTTCACTAACAGTATTATTTGGGCTACAATCTATCTAGGCTTATTGCAGC ATCAATTAAAGCTCTTAAAGTACCATTGAAGTATTCTTTGAGACAGTCTCTTCAGGCTAAGTTACAGGAGCATAGGAATA AGAGTGTGAAAGAAAGTTCCTCACGACTTTAAAGTTGGTTGTTTAGGCTTCTAAGTAAAGAAACTAAGTATTCTCTTAGA AGTTTACAACTAAGTTCAGAATGCATATGAATTGTATTAGTGTTGGATACATGAGTGTTTCAAGCTTCCAAAAAACTTGA TTTTGCAAATCGTTTATTTTTCTTTTGTTTTTGTCCTTTTCTATTCAAGGAAACACCCTCTGTTTCCCTCTGTTTATGAT GTTCTTGTAAAAGAACTTCCGTATGTGACCGTGACAACTAAGTTTAGTTTTCAGTTGAAAATCACATTCAGTGCATTGGA ATTTAAGAACTTGCATTGCAAGACACTAAATGTGAAAACAACCCAAGACATTCGTTTGCTGGTTCTGTCAGGTCATGTGT TTCTCTATTCGTAGATGGTATTGAGACTGTTAATTATTTAGAGGATTGTTCGCTCAATATGGGAGGTTAGTGAAAGTGTT AGTGCAGCAAAAGAAAAAGATAGGAAGACGCTTTCGTTTCTACTTTCAGTATTTTGTGTGTTACACATATGAATATAGAT GCCACGACAATGAAGCTTTTAGATGGTATTAGGGTGGGTGGCGAGTCATTACCGGTGGCGTTGGCTTGACCCCCTCGTAA ATGGGTATGAGGTTGGGCATGAGTAAATACCCGCAAAAAATAGTGGGTTTGGGTGAGTATGGGTATTATAGAACCCAACC TGCCTCATACTGGCATACACACGTTACAGTTTACACACATAATTGGTAGTATATTAATAAACTTGAAATATAACTTTCTA AGATTAATAAATTTGAAATATAACTTTCTAACTTCTTTTAGAAAATTAGTAAGTGAACTCTTAGCATT
CDS sequence (LotjaGi1g1v0613600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCACCGAAGAGCCACCGAAGAAGGAAGGAAGCAACCTCCTCGGCTCGCCGACCTTCACAGAGCTCGAAAATGG GCGCTTCAAGTGCGTAGAGACAGGCCACGAGGTTCTCTCCAAGGACATACCCTCCTACTCCAACAGCAAGAAGTGCCGTT TGGGTCTCATCGATTTCGCTTTGTCCAATCACAAACCCCCTCTCAATATGTTCAACCAAGACCCTCTTTACCGTTCAAAG TTGATTTGTAAGCTAACTGGAGATAATGTCAATAAGTCAGAGGAACATATCTGGAAGCATATGAGTGGGAAAAGGTTTCT CAATAAATTAGAGCAGCAGGAAGAGGGGAAGCTGTCGTGTCATGATGGAATGGAAGGTGAGGAGGAGAGCTTAGAGGAGC CACTGAGTGCAAATGGTGGTCAGAAGGATAAAAGGAAGAACAAGAAGAAGACGAAAAAGGGGAAGAATAAGGACAAGGGA GTTGAAGAGATTATTTCTGAAGTTCGAAAGTCTTCTAATGAGGAGAGTGATGCAGAAGAGGATGATTTCTGGATGCCTCC TGTTGGAGAGCGCTGGGACTATGATGATGGACGAGACCGCTGGGGTTCGGATTTGGAGTCAGAGGAGGAAACTGAAGAGG GAGATGTAATTGATGGTGCTGCTGATGAGGATTGCAAGGAGTCAGAAGAGTTGTCCTCGAGGACAAAAAGAATGTCTATA GAAGTTGGGCCAAGCAGCTTTGCCTCAAGAAAAAAGAAAAGTAAGAAGAATCACCAAACTTGA
Protein sequence (LotjaGi1g1v0613600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTEEPPKKEGSNLLGSPTFTELENGRFKCVETGHEVLSKDIPSYSNSKKCRLGLIDFALSNHKPPLNMFNQDPLYRSK LICKLTGDNVNKSEEHIWKHMSGKRFLNKLEQQEEGKLSCHDGMEGEEESLEEPLSANGGQKDKRKNKKKTKKGKNKDKG VEEIISEVRKSSNEESDAEEDDFWMPPVGERWDYDDGRDRWGSDLESEEETEEGDVIDGAADEDCKESEELSSRTKRMSI EVGPSSFASRKKKSKKNHQT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| PANTHER | 4 | 259 | 256 | 4.2E-116 | – | |
| PANTHER | 4 | 259 | 256 | 4.2E-116 | – | |
| Pfam | 8 | 255 | 248 | 4.0E-70 | – | |
| MobiDBLite | 113 | 260 | 148 | - | – | |
| MobiDBLite | 156 | 176 | 21 | - | – | |
| Coils | 161 | 181 | 21 | - | – | |
| MobiDBLite | 184 | 205 | 22 | - | – | |
| MobiDBLite | 206 | 225 | 20 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0613600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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