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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0614100 |
| Transcript ID | LotjaGi1g1v0614100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Hybrid PKS-NRPS synthetase ATEG_00325; TAIR: AT5G14410.2 hypothetical protein; Swiss-Prot: sp|P29539|RIF1_YEAST Telomere length regulator protein RIF1; TrEMBL-Plants: tr|I3SHD4|I3SHD4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0614100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:115997444..115999225) extracted from Lotus japonicus Gifu genome v1.2.
CTTTACTTTCTCTCTTATCTCATTTTCACACATTTTCCTTTTTATTTCTCTGTAATTTCTGTCACATCACATATCATACC ACTCATTTTTCTTAGGGGTTGTCTAAATGACCCATAATAAAGTTTAGGTTAAATAACCCACCATCCAATCACATTAGAGA TAAGTGAGTTGAAATTTCTATATTTTATTTATTAATTTATTTCCAACTCATTTATCTCAAATGTGATTAAATGGTCGGTT ATTTAACCCAAACTTTATAATGGGTCATTTAGACAATTTTTTTTCTTATTTATCTTTATATTTCATAAGGAGAAGGTGGA ATACAAGTGTTAACACACCATTATTCAATTCCATTTAACTTGATAAATCAAACTGTACTCCATATTAATCGCTGTGTCAG TAAATACACCCAACTACCTCTTGAGGTTTCATTTAACACACTCAACAGCTTCTACATATCTATCACCTCTCTGATCCTTC CAACAACCCATAGACCCTTCCCTTTCTTCCCTTGTCATATCAGATTTCATATTAAAAAAAACCAACAACTCAAAAAACAT ATCCTTCAAGAGGGATAAATACTTCTCCCATCTTTCTCCAAGTTTTCATTGATTTGCCATCTTTTGTAGTTGATTTCAAT TCTGAGATAATCCAAAATGTCTAACATCCAGATTGCATCAGTGAGCAAGTTTCGTTACCAAAGGCTCAAACATGAAGGTG GGTATGAAATTGAGAGGGACAGAGTACTGATTCAGAGACCAAAGAGCTGGTTCAGGTTCAGGTTCAGAAGGATTCAAATT AGGAGGAGGTTCAGGCTGAAAATTCCAAGCTTGAAAAGACTCTGGAGGAAAAGGGTCAGGCTAGTCTCTTCCATGAGACT TTCATATGCCAAAGTGTTGAAAAGGTTCAAGGATAACAAGGTTCATTTTGGTGATCTTTTTGCTGGGAACTACTTGTTCA TGCAAGTCAATCCTTCATCACTCAAGTACCTTGAAAAAGAGTTCTCTATTTCAAAAATTGCTTAGTCTTAATTTATCTGC ACGCACCCTTAATTTGTTTATTGTGCAATCTTTTCATGTTCCTATAATGGCTTGTTTACTAATGTAACTCTGATCTGTTA ACCTCATTCTGAAAATTTGGGATTGGGATGCAGCAAAATAGTAATTTATAGTTGGAATAATCACTTTCCTCTTCAAATAT ACTAGTGGCTCTGCTGCCTCTACCTCTACTTCACGTCTTCACATTAAATTCTATCAGCCCAATTTATAAATCATTTAAAT TTACCAATTACCATTAATTATTGCTTTAAATCATGGTTGAAACTTGAAACTAGTAGATTTTCGAATTTGTCAAACTTGTC TCTTCCAATTTTTTTATGGCATAGCTAGTACTCCTAATTGTTTCCCTCGTTCTAGGCCTGATTGCAGGAGAGATCTGATT GTTCAGTTTGCAGAAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAAAAAAAGCAAGTTCATAATATAATGTGACACCATTT GTTCAGAATGGTGACAGTTGGACAGAAGCTTATACTGATCTGTCAATTTGTAAAATGCTTCAGTATTTGTTTGTTTTAAA GTTTTTTTTTTTAAAATGTTTGTTTTAAAGTTGAGTAGGATAGAATGAAGCTAAGAAACAGAGGAATAACTTTTGTTGAA ATTCAATTTAGATGTTTTTACTTAAATTTAAATAAAGTGGGTTTTTTTTTTGTTACATAAGGAATGAAAAATAAAGTGGG TTTGGAAAGACTTAAATCGTAC
CDS sequence (LotjaGi1g1v0614100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTAACATCCAGATTGCATCAGTGAGCAAGTTTCGTTACCAAAGGCTCAAACATGAAGGTGGGTATGAAATTGAGAG GGACAGAGTACTGATTCAGAGACCAAAGAGCTGGTTCAGGTTCAGGTTCAGAAGGATTCAAATTAGGAGGAGGTTCAGGC TGAAAATTCCAAGCTTGAAAAGACTCTGGAGGAAAAGGGTCAGGCTAGTCTCTTCCATGAGACTTTCATATGCCAAAGTG TTGAAAAGGTTCAAGGATAACAAGGTTCATTTTGGTGATCTTTTTGCTGGGAACTACTTGTTCATGCAAGTCAATCCTTC ATCACTCAAGTACCTTGAAAAAGAGTTCTCTATTTCAAAAATTGCTTAG
Protein sequence (LotjaGi1g1v0614100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSNIQIASVSKFRYQRLKHEGGYEIERDRVLIQRPKSWFRFRFRRIQIRRRFRLKIPSLKRLWRKRVRLVSSMRLSYAKV LKRFKDNKVHFGDLFAGNYLFMQVNPSSLKYLEKEFSISKIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 120 | 114 | 1.5E-44 | – | |
| PANTHER | 7 | 120 | 114 | 1.5E-44 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0614100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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