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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0620900 |
| Transcript ID | LotjaGi1g1v0620900.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G56820.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FJT1|FBD29_ARATH Putative FBD-associated F-box protein At5g56820; TrEMBL-Plants: tr|I3S460|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:116817869..116818846) extracted from Lotus japonicus Gifu genome v1.2.
GGGTGTTGGGTTTCCAAAGCGTCAGAATTTTATGGAGCTTCTTTATGGATGTCCTATTCTTGAAGATTTGCAAGTGAAGC TTATATCCTTTGATCCCTCTGATCCCTCTTCATTTGAGGGCATGGTTAAAACTTTACCAAAGTTGGCCCGGGCACATGTT TCTTCCTTCACTTATGATGATATTCCTTTGGAAGCATTTTGTAATGTAGAGTTTCTGCGCCTCGACAAGGTTTGTAATTG TATCTCGAAAAAGAGACTGAATTCAATTAGTTAGCTTTTTTAGAAATATACCAATGTTTTTAATGATTTATCTTTCTAAC TCTTGCAGTACTGCGATGTAAACGTAAACAATCTTGTGTTTCCCAATTTAATTCATATGGAGCTCATCTTGGGACGCAAA TTTAAATGGAGCTCGGTGCTTGATTTGCTCAGTCATTGCCCTCAACTTCAAACTTTTGTCCTTGAAAACCTACATGGTCG TGACAGGGGTTGGCCAGACTCACTCGCTGTTCCTGAATGCTTTGTGTCACGGCTCTGGAAGTGTGTTTTTAAAAATTTTA CTGGCCTGAAAGGTGAGATGAAATTTGCAAAGATTGTTATGCGTAATTCGACATCCTTACGTACCATGACAATTTGCAGT GGACCTAGCTTATTTCATCATCAGAAGCTTGAAATGATAACTGAATTAGCCTCATGCCCAAGAAGCTCGGTAACTTGTGA ACTTTTATTTAAGTAATTGATATGCTTGTTAGTAGTTAAAAACCATTCCTTGATAAATGCATTTGTAATTCGTTCTGAAT ATTATGTTCTGCTGATTTTGGTGCTTTTGAAGACAAACAAACTATGTGTCCTTGTAGTTGTTGGTACCTCCTTGGGTATT TCTTATCTATTGCTGTAACTTTTGAATATGTAACAGAAACTAAAATAGGAATGTATTTTTAAATTAGTTATGCTGATGTT TATCCTTGTGTGTCTTAG
CDS sequence (LotjaGi1g1v0620900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTCTTTATGGATGTCCTATTCTTGAAGATTTGCAAGTGAAGCTTATATCCTTTGATCCCTCTGATCCCTCTTC ATTTGAGGGCATGGTTAAAACTTTACCAAAGTTGGCCCGGGCACATGTTTCTTCCTTCACTTATGATGATATTCCTTTGG AAGCATTTTGTAATGTAGAGTTTCTGCGCCTCGACAAGTACTGCGATGTAAACGTAAACAATCTTGTGTTTCCCAATTTA ATTCATATGGAGCTCATCTTGGGACGCAAATTTAAATGGAGCTCGGTGCTTGATTTGCTCAGTCATTGCCCTCAACTTCA AACTTTTGTCCTTGAAAACCTACATGGTCGTGACAGGGGTTGGCCAGACTCACTCGCTGTTCCTGAATGCTTTGTGTCAC GGCTCTGGAAGTGTGTTTTTAAAAATTTTACTGGCCTGAAAGGTGAGATGAAATTTGCAAAGATTGTTATGCGTAATTCG ACATCCTTACGTACCATGACAATTTGCAGTGGACCTAGCTTATTTCATCATCAGAAGCTTGAAATGATAACTGAATTAGC CTCATGCCCAAGAAGCTCGGTAACTTGTGAACTTTTATTTAAGTAA
Protein sequence (LotjaGi1g1v0620900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLYGCPILEDLQVKLISFDPSDPSSFEGMVKTLPKLARAHVSSFTYDDIPLEAFCNVEFLRLDKYCDVNVNNLVFPNL IHMELILGRKFKWSSVLDLLSHCPQLQTFVLENLHGRDRGWPDSLAVPECFVSRLWKCVFKNFTGLKGEMKFAKIVMRNS TSLRTMTICSGPSLFHHQKLEMITELASCPRSSVTCELLFK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 130 | 130 | 1.4E-7 | ||
| SUPERFAMILY | 3 | 147 | 145 | 8.24E-5 | – | |
| PANTHER | 3 | 198 | 196 | 4.2E-36 | – | |
| PANTHER | 3 | 198 | 196 | 4.2E-36 | – | |
| Pfam | 126 | 168 | 43 | 1.1E-10 | ||
| SMART | 129 | 201 | 73 | 3.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0620900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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