Transcript — View — Lotus Base

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LotjaGi1g1v0620900.2

Overview

Field	Value
Gene ID	LotjaGi1g1v0620900
Transcript ID	LotjaGi1g1v0620900.2
Related isoforms 1	LotjaGi1g1v0620900.1
Lotus japonicus genome version	Gifu v1.2
Description	FBD-associated F-box protein; TAIR: AT4G26350.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp\|Q9STQ0\|FDL28_ARATH Putative F-box/FBD/LRR-repeat protein At4g26350; TrEMBL-Plants: tr\|I3S460\|I3S460_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0620900
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:116817883..116818520) extracted from Lotus japonicus Gifu genome v1.2.

AGTACTGCGATGTAAACGTAAACAATCTTGTGTTTCCCAATTTAATTCATATGGAGCTCATCTTGGGACGCAAATTTAAA TGGAGCTCGGTGCTTGATTTGCTCAGTCATTGCCCTCAACTTCAAACTTTTGTCCTTGAAAACCTACATGGTCGTGACAG GGGTTGGCCAGACTCACTCGCTGTTCCTGAATGCTTTGTGTCACGGCTCTGGAAGTGTGTTTTTAAAAATTTTACTGGCC TGAAAGGTGAGATGAAATTTGCAAAGATTGTTATGCGTAATTCGACATCCTTACGTACCATGACAATTTGCAGTGGACCT AGCTTATTTCATCATCAGAAGCTTGAAATGATAACTGAATTAGCCTCATGCCCAAGAAGCTCGGTAACTTGTGAACTTTT ATTTAAGTAATTGATATGCTTGTTAGTAGTTAAAAACCATTCCTTGATAAATGCATTTGTAATTCGTTCTGAATATTATG TTCTGCTGATTTTGGTGCTTTTGAAGACAAACAAACTATGTGTCCTTGTAGTTGTTGGTACCTCCTTGGGTATTTCTTAT CTATTGCTGTAACTTTTGAATATGTAACAGAAACTAAAATAGGAATGTATTTTTAAATTAGTTATGCTGATGTTTATC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0620900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTCATCTTGGGACGCAAATTTAAATGGAGCTCGGTGCTTGATTTGCTCAGTCATTGCCCTCAACTTCAAACTTT TGTCCTTGAAAACCTACATGGTCGTGACAGGGGTTGGCCAGACTCACTCGCTGTTCCTGAATGCTTTGTGTCACGGCTCT GGAAGTGTGTTTTTAAAAATTTTACTGGCCTGAAAGGTGAGATGAAATTTGCAAAGATTGTTATGCGTAATTCGACATCC TTACGTACCATGACAATTTGCAGTGGACCTAGCTTATTTCATCATCAGAAGCTTGAAATGATAACTGAATTAGCCTCATG CCCAAGAAGCTCGGTAACTTGTGAACTTTTATTTAAGTAA

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Protein sequence (LotjaGi1g1v0620900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELILGRKFKWSSVLDLLSHCPQLQTFVLENLHGRDRGWPDSLAVPECFVSRLWKCVFKNFTGLKGEMKFAKIVMRNSTS LRTMTICSGPSLFHHQKLEMITELASCPRSSVTCELLFK

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR32212:SF263 View details on PTHR32212:SF263 Search for proteins/transripts with this domain View external data on PTHR32212:SF263	2	116	115	6.8E-21	–
PANTHER	PTHR32212 View details on PTHR32212 Search for proteins/transripts with this domain View external data on PTHR32212	2	116	115	6.8E-21	–
Pfam	PF08387 View details on PF08387 Search for proteins/transripts with this domain View external data on PF08387	44	86	43	3.9E-11	IPR006566 Show description in modal box View details on IPR006566 Search for proteins/transripts with this domain View on EBI InterPro Service
SMART	SM00579 View details on SM00579 Search for proteins/transripts with this domain View external data on SM00579	47	119	73	3.4E-10	IPR006566 Show description in modal box View details on IPR006566 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0620900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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