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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0625700 |
| Transcript ID | LotjaGi1g1v0625700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G22730.1 F-box/RNI-like/FBD-like domains-containing protein; Swiss-Prot: sp|Q9FNI8|FBD32_ARATH FBD-associated F-box protein At5g22730; TrEMBL-Plants: tr|I3SP82|I3SP82_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0625700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:117380130..117381292) extracted from Lotus japonicus Gifu genome v1.2.
CTCAAAGGTAAGTATGCAACATTCACCGACCATATTCAGACATGGTTAACCGCCGCAACAGTGCGCAATGTCGAGACCCT CGAAATTGAGTGTTGCTCAAGATATCGCTTGACCTTGCCGTGGAGCATTTTAAACACCACAACCACCCTACTTGTTCTCA AGTTGCATTACACCCAGTTTAAGGATTTTTCCATTGTTCAACTTCCCTCACTCAAACTTCTGCATTTGAGTCATGTTAAA TTTTTGAAGCCTCAACATTTCATGGAGCTTCTTAATGGATGTTTCAATCTTGAAAACTTGAAAACAAAGCAGTTATCGTT TGAATTTGATTATGATGACGATGAAAGGAAGTTTAAACCTTTATTAAAGCTTGTCAGAGCTGATATTGGTGTCACGATGG GGATGATCAAACTTTCTTATTTCAACGAGTTTCTGTGCAAGGTTTGTATTTGGAAAAAGGAAAATCAATTTATTTTCTTT ATCAATATTTCTGATCTGATCATTTTTCTTGATAATTCTTGCAGTTCGCAGACATTCCTATATTTCCCAATTTAATTCAT ATGGAGCTCACCTTGGGAGGCCGGATTAAAATGGAATCGTTGCTTTATTTCCTCAATCATTGCCCTCGACTTCAAAACCT TGTCATGGAAAACCTATTTTCTATTGATTCTAGGAATTGGCCAAATACACTTGTTGCTTCTGAGTGCTTTTCTTCACAGC TCCGAACCTGCTTTCTTCCATGTTTCACAGGCACCGATTCTGAGCTAAGATTTTCCAAGTTTGTTATGCAAAACTCAACA TTGTTAGGTAGCATGAAAATTATCGGCCATTCCCTATCTCATGAGAAAAAGGCTAAGATGAGAATAGAATTAGACTCATG CCCAAGGAGCTCTGCAAACTGTCAACTCTTATTTATGTAATTTTGTTAGTAGTTGAAAATTATTCCTAAATAATTGCACT TGTACTTATGACTACATATAATGTATGTGCTGATTTTGAACAACAGTTGACTTAACTGATACTAAACAACATTACAGGAG TGATATGGAAGAACTTAGTGTATGCAAGATTTTGAGACTGATTATAACTTATTTGTTTGATTCTGCTTGTATTTTTGAAG TTTAGGTATGATGATAACAGAGTTTATTGTAGATGAATCCACT
CDS sequence (LotjaGi1g1v0625700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGCTTCTTAATGGATGTTTCAATCTTGAAAACTTGAAAACAAAGCAGTTATCGTTTGAATTTGATTATGATGACGA TGAAAGGAAGTTTAAACCTTTATTAAAGCTTGTCAGAGCTGATATTGGTGTCACGATGGGGATGATCAAACTTTCTTATT TCAACGAGTTTCTGTGCAAGTTCGCAGACATTCCTATATTTCCCAATTTAATTCATATGGAGCTCACCTTGGGAGGCCGG ATTAAAATGGAATCGTTGCTTTATTTCCTCAATCATTGCCCTCGACTTCAAAACCTTGTCATGGAAAACCTATTTTCTAT TGATTCTAGGAATTGGCCAAATACACTTGTTGCTTCTGAGTGCTTTTCTTCACAGCTCCGAACCTGCTTTCTTCCATGTT TCACAGGCACCGATTCTGAGCTAAGATTTTCCAAGTTTGTTATGCAAAACTCAACATTGTTAGGTAGCATGAAAATTATC GGCCATTCCCTATCTCATGAGAAAAAGGCTAAGATGAGAATAGAATTAGACTCATGCCCAAGGAGCTCTGCAAACTGTCA ACTCTTATTTATGTAA
Protein sequence (LotjaGi1g1v0625700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELLNGCFNLENLKTKQLSFEFDYDDDERKFKPLLKLVRADIGVTMGMIKLSYFNEFLCKFADIPIFPNLIHMELTLGGR IKMESLLYFLNHCPRLQNLVMENLFSIDSRNWPNTLVASECFSSQLRTCFLPCFTGTDSELRFSKFVMQNSTLLGSMKII GHSLSHEKKAKMRIELDSCPRSSANCQLLFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 188 | 177 | 3.3E-22 | – | |
| PANTHER | 12 | 188 | 177 | 3.3E-22 | – | |
| Pfam | 120 | 159 | 40 | 4.1E-7 | ||
| SMART | 120 | 191 | 72 | 0.0013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0625700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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