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LotjaGi1g1v0627100.1

Overview

Field Value
Gene ID LotjaGi1g1v0627100
Transcript ID LotjaGi1g1v0627100.1
Lotus japonicus genome version Gifu v1.2
Description WRKY transcription factor-like protein; TAIR: AT5G14090.1 regulator of nonsense transcript protein; Swiss-Prot: sp|Q5XV40|LAZY1_ARATH Protein LAZY 1; TrEMBL-Plants: tr|I1N7U3|I1N7U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0627100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:117606444..117611330) extracted from Lotus japonicus Gifu genome v1.2.

CAAAGAGCACTTGTAGGAGCTTATCTAGTGCTTTTCTTAGGAGATGCCCTCCAATCATAAACGGGTCCATTGAATAGATA TATAATTTCCTGCTCAGCAGTGACAGTGGTTTAACAATTGATATTCATACATCATCTTTCAAAATTGACAGTGCTTGGGC CTCTTAATGCACCGTTGGCATAACTTAGATCAAAGGTTATGGATTTAATACATGTGTTATCTAATTTCATGAAAGTTCAT ACAAAGACAAAAATATAGACAAATAGCAAATAGTTGGTACGCAATCCACGCCCAATTTACCCACATGATTAGATTTTGAA ATGAAAAGCCAACCACATTGTTGTAACTATCTAATTGTTTTTCTCTATGCACACAGCTATCTGAGACCCTTCAAGCACCT ACCAACTTCCAACTCATGAGTCACAAAGAAAAGATCTGTGTTTTTTCACTTTATAGCCTCCCAATCCTGGAGACCCTTTT CCTTGCACATATATATCTACCAGCAAACTCTGTAAACTAAGAAATCCTTGGTTATCAAATCAAGAAAAAAGATCAAAATG AAGGTAAGTCATAACTCAGCCAATTTAGAATGAAAATTTTCTTAGTCCTTCAGCTTCATCGATACCTTTATTTCTTGCAG TTATTTCAGTGGGTGCATCGAAAACTTCAGCAGAATAGTAATGATCCTCTCAAGGAGTTCACACTTGGTATTGAACTGCG TTCTTATTATCCTTATCTCCTATCCTGCAAACTTTTCTTGCTTTCTTTCTTCTTTTTCTAGGAAGGTTGGCAATGTAAAT GGTCTTTACGGCATTCATTGGAGGCTAAACTGTCATGAGGCACATCTTGACAACGTTTAATTGTCTGACTGAGTGGTCAT TGTCCATAAATGCAATAACAAAATATGTATCATTGATTATTCTGAGGTGCACCAGTACCTGTGGCTGTGAAAACTAATCT AACAAAAATGTTACATGACTCTGGCTATTGTAAAAAATAGGTGTTTTGCATATTAGGTTTGTTAATCAGATCAGGACCTA TTAGGACCTCTATAATTCTTGCATCTGCATCTCACATAAATAGGTTGGTTACAACCACAAACTTACAGCCGAAAAAATTT AACTTAATCACTCTCAGCCTCTTATCCACAATTAACTCATCGAATTATTTTCTTTTTTGTTCCCTTCTTTTATTGTGCAA TCCTATTTCAAAGGTTTATTGAGAGCAACACAAGAAATATATGTTTCACTATGTTATGTGGACTGTAGATCTATCTTTAG TTGCTAATATCACCAATTTAGTAATTTCTTTCTGCCATTTCAGGAAACCCTTGTGCTTGTCTCACAGCGCAGCCAACACT AGACAACCAATACTCTGAGACAAAGCCAAGCTTCAGTTCAATCAATCCACCGAGTTTCTTAAAGCCACACCATCAGGAGG GCCAAACATCTTATTATGAGTTTGATGACAACAGAGAAGACAAGTCCCAAGAAGACACACCTGCAGTCATCTCTGAGCTC TTTGAAGGCTTTCTGACAATTGGAACTCTTGGTGCAGAAACAATCACCAATGAGCCAGGAACACCAACATTTGCCACGCC TTCGGAAGAAACAGAGCATGAACTGAAGCTCATAAGCTACGAGCTCGAGAAATTCCTTGAGGATGAAAAAGAAGAAAGCT TCTATGAATCATCAGGAAGAAACAGCCGTCTTAGCAATATCACACTTAGTGGGAAGCAAATAGATGCACCCGAAGCAGAA GATTATGGAAACAGAGATGTATGTCCGTTGCAAGGATATTTATTGGGGTCATCATTTGAATTAGCAGAGACAACAGAAGT GAGGAAAGAAAGGGCATCACTTGCTGAGCTATTTCATAGGACAAAGACAACAAATCAAGAATGTAAGGAGACAGGAGCAA AAGAGACGCATCATGTCAAGGAAACACATAAGTCAGCCATGCATATCATGAAAAAGATGTTCAAAATGGTCCACAGTTCT TCAAAAGGCTGTAAGACTTCAGGGAATGATGTTGATTCTGCTTCAACCAATAAAAAGCTCCCTAAGGTTGGTATATGTTA CTATAGATCTTCTTTTACCGTATTTCTCAACAAATCCCATGGTATATGTTCCTATCACTTTCATCTTTGACTATTGCCTG TGACTTCAGAAAATATAGCCAAAATTCGAATGCATGTTTATTTCTGAGTTACTAGAAATATAATGAGAAATGTGAAACTG GGAATCATTTAATTCTCAGATAGATCAGCCAAGAACTATCAATAAGACAACAACATAAATTTATTGCTTGATTGTGTTCA TTGAGAATTAAGTAAAACACACTACATGTAGGAGAACCAAAAGAAAATCAGCATATCAATATTTAGAACTTGTAAAGAAG GCTTAAGGCGATTATCAGAAGGGATTCCTGTAAGGTTTACAACAAAATGTAACTATGATAAAAATAAGGTAATGTGCCAA TCACCAGGTCTGGCCAGTCAGCAATCAGTATCTTCCAGAATAAGTTTAGCTATCAAAATAAAACCACAATTTCGACATGA ATGATGAATGTCTTTGACTATATATTAAATAAAACCATCACATTGTACTAAATTATTTGGTTCATTCATCTGGATATGCA GGTTCTACGTATGTTTCACAGAAAAGTTCATCCTGTAAACACCATAGATGAAAAAAACCATGTCAAATCCCATAAAGGTA AGATCAAAAATACTCCTCAAGACTGCTTCCAAGAATATGATAATGGAGACCCCGCAAACCCAGAATTTGGCAGAAGATTT GATTCAGATGCCAAATCAGGAAAGTGGTCTCAAGACTGTAAGACCAATTGGAACCCACCGCAACATGGGCTAAGTTGCAG CAGTTCAACTGGAAATAATGAGCACTGGATCAAGACAGATACAGAGTGTAAGTACTACATAGCTCTAGAATGCAATTCAC ACACAAGTTTGATAAACATTTTCCATCAGCATTTAATTATAGTCCATGCATTGTTATTTCTTTGTCTCTACTATTTTATA CAGAAATACTTTTGTATTAATATAAATAATATTAATCGGGTAAATGATTAATAATATATAAAATTTATAAACAAAATGAC ATAAGAGAAGACTAATAAAAAGAATATAATAAATACAATTTGTTTTAATAATTAATATTTGACATACCTGAGGTCTTTTA GAGTTCATTCCCCAATTTTTATCACGAGGAATAAGCTGGAATATTTGTAGGAAAGGTATAACAGATCGTTCATGTCCCAG CAAAATATTGGAGAGGAGAATTGTTCAATGGTGGAAGAGAAAAGGATATGTGAATTAGGATTAAAGAGGTAGTAAGGATT AAAAATTTGAAATTACCTGTTTCCGTTTTCTGTCCAATTTTCTGTCTTTCCAATGAAAGCATAATAATACTGAGTAGTAT TATTGTTACTTAGAAAGTTTTTCTGCATTAATTCCAGTTCCTATAACCCTATAATTATTTACTTAACAGAAATAAATTAT GTTATAACATCTTTTACTTGATACTTGTAGGGAATTAAGGATCAAGAGGTTCAAGCCTATCTCCTCTTTCCCACTTCCTA ACACTGACCTTACAAAAGAAAATACCCAAACACCTATCAGCAAATGTTTTGAGAAATATATTTCCCTTTAAACATAAATC AACTTGACAAACATTGAATGTCATATAATATGTAACCCAAAACAAATCTCAAACTAAAAAAAACCTTAGAAGTCTTCTTG ATGTCAATACAAACTAATATATTATGGAGCACCATTATATATGCAGGATTGCTTTATGATTAAATCATACTGTATTGCTG ACTCACTTATAATTGTTGGTATTGTAGATTTGGTGCTGGAGCTGTAACAATATAAGCTGTATGAAAGTTGCAATAAATTG AGCCTCCATAAGAGACTTGTAAAAAGTAATATTTTATACGATGGTCGTGTTTTGAATGTACTTTTGAGTGGAAACTAATA ATGCATTCAATAAAGCTGTGATTTTTATGAAAGATTCCAAATAAGTAGACATGTTTTGGTCGATTTTACTATTTTTCTTT TGAATTCTTGATAATCATTCTTGCATCACATGAGTTGTGAATATCAGTGCTCTGCAGTCAAACTTGGGACATGAATGTAT CAATACTGCCACTTTTAAATGCATCATAGAAGAGAAGACAGATGAAAATGAACAAAATAGCCTACAACAAAATATATGCA TCAGAATGGATTTCCAGGATTTGTTAGCAAATCCTCTCCTCACTAGGTTTTAAGAAGGCATGCAAGTAACCCTCTGATAG ACCAAATGATTGTATAGATGACTGATCAAAATAGAAAAACGCATAATCTACTATTCAGATGTTAAGCCTTTTAGAGATCA CACGTACACTAAGATTCTTATATGCGTATTACTAGATAATTATATTTCTAAAATTACCTAACTCAAACTCTAGCTTGAAG CACGGGCAAAGCATAATCACACCATAGGCATATTGAGAATTTGTAATTTAATTACGAAATTGGGAGGATTGAACTCCCAA GTCCTGATCACTTGGTCATAGAATTCTTGAGATCATTTGAAGGATCAAATGTCCCAAAAACTTAAGTTGTAGGGTGATAA TATGAGAATACATTATATTTCTAACAATTAGTAAAGCAGAGCTACAATCTTTTTCCTTTTAAAAATTTTCCTGTCAAGTA TCGAAAGTGCAGTCGAAAATACATCAAGCACTGGAAGATAAAGGTTCAGACCTCGTGCGCAATGCTGATTAACAAGGAAA TAATTATAAATTATAAAGGTAGAAACTCCTCTCTAAGGTTGCCACCCATTTCCATCCTCCACGATCGATCGACTAGACTT GCAAACT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0627100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAATTTTCTTAGTCCTTCAGCTTCATCGATACCTTTATTTCTTGCAGTTATTTCAGTGGGTGCATCGAAAACTTCA GCAGAATAGTAATGATCCTCTCAAGGAGTTCACACTTGGAAACCCTTGTGCTTGTCTCACAGCGCAGCCAACACTAGACA ACCAATACTCTGAGACAAAGCCAAGCTTCAGTTCAATCAATCCACCGAGTTTCTTAAAGCCACACCATCAGGAGGGCCAA ACATCTTATTATGAGTTTGATGACAACAGAGAAGACAAGTCCCAAGAAGACACACCTGCAGTCATCTCTGAGCTCTTTGA AGGCTTTCTGACAATTGGAACTCTTGGTGCAGAAACAATCACCAATGAGCCAGGAACACCAACATTTGCCACGCCTTCGG AAGAAACAGAGCATGAACTGAAGCTCATAAGCTACGAGCTCGAGAAATTCCTTGAGGATGAAAAAGAAGAAAGCTTCTAT GAATCATCAGGAAGAAACAGCCGTCTTAGCAATATCACACTTAGTGGGAAGCAAATAGATGCACCCGAAGCAGAAGATTA TGGAAACAGAGATGTATGTCCGTTGCAAGGATATTTATTGGGGTCATCATTTGAATTAGCAGAGACAACAGAAGTGAGGA AAGAAAGGGCATCACTTGCTGAGCTATTTCATAGGACAAAGACAACAAATCAAGAATGTAAGGAGACAGGAGCAAAAGAG ACGCATCATGTCAAGGAAACACATAAGTCAGCCATGCATATCATGAAAAAGATGTTCAAAATGGTCCACAGTTCTTCAAA AGGCTGTAAGACTTCAGGGAATGATGTTGATTCTGCTTCAACCAATAAAAAGCTCCCTAAGGTTCTACGTATGTTTCACA GAAAAGTTCATCCTGTAAACACCATAGATGAAAAAAACCATGTCAAATCCCATAAAGGTAAGATCAAAAATACTCCTCAA GACTGCTTCCAAGAATATGATAATGGAGACCCCGCAAACCCAGAATTTGGCAGAAGATTTGATTCAGATGCCAAATCAGG AAAGTGGTCTCAAGACTGTAAGACCAATTGGAACCCACCGCAACATGGGCTAAGTTGCAGCAGTTCAACTGGAAATAATG AGCACTGGATCAAGACAGATACAGAGTATTTGGTGCTGGAGCTGTAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0627100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKIFLVLQLHRYLYFLQLFQWVHRKLQQNSNDPLKEFTLGNPCACLTAQPTLDNQYSETKPSFSSINPPSFLKPHHQEGQ TSYYEFDDNREDKSQEDTPAVISELFEGFLTIGTLGAETITNEPGTPTFATPSEETEHELKLISYELEKFLEDEKEESFY ESSGRNSRLSNITLSGKQIDAPEAEDYGNRDVCPLQGYLLGSSFELAETTEVRKERASLAELFHRTKTTNQECKETGAKE THHVKETHKSAMHIMKKMFKMVHSSSKGCKTSGNDVDSASTNKKLPKVLRMFHRKVHPVNTIDEKNHVKSHKGKIKNTPQ DCFQEYDNGDPANPEFGRRFDSDAKSGKWSQDCKTNWNPPQHGLSCSSSTGNNEHWIKTDTEYLVLEL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR34959:SF4
16 388 373 2.0E-154 –
PANTHER
PTHR34959
16 388 373 2.0E-154
IPR038928
Coils
Coil
388 388 1 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009630
Biological process Gravitropism The orientation of plant parts under the stimulation of gravity.
Subterm of
GO:2000012
Biological process Regulation of auxin polar transport Any process that modulates the frequency, rate or extent of auxin polar transport.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0627100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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