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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0636700 |
| Transcript ID | LotjaGi1g1v0636700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Avr9/Cf-9 rapidly elicited protein; TAIR: AT1G52140.1 Avr9/Cf-9 rapidly elicited protein; Swiss-Prot: sp|Q6R7L6|PRIM_OSHVF Putative primase; TrEMBL-Plants: tr|I3SFP6|I3SFP6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0636700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119161435..119162861) extracted from Lotus japonicus Gifu genome v1.2.
GAAAATAAAAGAAAAAGGGTCGCTATATAATCCTTGCTCTTCACCTTCCACTTTCACACATTGGGTTTGCAACACGAAGC AGAAACAAGAAACCCACCCAAATTTGGCAAAACTCTCCACCATCAATTCTCTTTCTCTTTCTCTTTCTTTTCCAACGGGG ACTTGAACACTTCATAAATTCTTATCTTGCTACTTTTTTTTACAGTTATTAACGACCCAGTTTTGAGAAATGGAAGTACA TTCTCAAGTTGCAGCCAAGAGACTGTGGAACGTGTTGAGGATCACCTTCTTCATGATCAGGAAGGGATTAATATCAAAGA GAAAGATGAATATGCACATGAATTTGATGATGAAGAAAGGGAAACTCCTCAGAAAATCTCTAAGCAATCTCATGCCATCA CATCATCAACAACAACAACAACACCATTCATCTTATTATGAATTCTCTTGCAGCAACAGTCCAAACCCTGTTTTCTTCCA CATGCCAAAGCGAAAGCACCACCGTTTCAACTTCCCCTGCATCCAAGCCCCTGAGGAATTTGAAGAGGGATCTCAATTGT ATTTGTCACCGCTTAAAGTTGAAAATGATGATGTGCCTAAGGATGTGGCCGTGGTTCCTCCCAAGACCCCAGAATACACG TTCAACTTCCGGTTCGACGCGACCGAGTTTGCTCCTGGGGAGAGAAAGAGTATAACTCTCTCACCGTTCTCAGTGAGGGT TTCCAATTACTCTGCATTGGAAGAGAATGAAGAGGTTGGAAGTGGTCTAGTTGATGATCAGGCTGAGGATTTCATCAGAA GGTTCTATGAACAGCTAAAGACGCAGAGCCGCGGGCAATTAGCAGGGTTTTAAATTGTGGTTACGGTTGCCCTTCCGTTA TGGAATTGCAGACAAGTGCGGATAGATGAGAATTGCACTTCCATACCGTTGCGGGAACTCCAAAATCTTTACTCTACAAT TGCTGTTGTTGACCGCAATTTAAAAGTCTGGCAATTACTGCACCACCTAATAGATGTAAAGACAAAGCATTTAATGCTGA TGAACTAGTTCTTGCAGGGCGTTTATTAGAACTTTTGCACTCTAAAATTTTCCCATTTTTGTTGTCTGTATAAATTGGAT TTTGCTGGCTATGATCCATCCATTATCGTTTTTTAATATCATTGAGTGTTTATCCACCTTTAATTTTGTTGTTAGTTTTT TGGTCTTAACCGGTGTAATTCTTAATTGATAGTCATGAAATTAATTTCTTGTGTCACACGATTAATGTACTAAGCGTTAT GAGACAAATTAATAAGTGTTTTTTTCCATTCACAATCTATATAATAAAGGATAAATAGAACTTTGATTATGCTGTGGAGT TACATTTACATCATGTGGGGCTTGTTAGGTGGACAACTTTTCACATGCTTTTAGCCTTTTCACAAAA
CDS sequence (LotjaGi1g1v0636700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGTACATTCTCAAGTTGCAGCCAAGAGACTGTGGAACGTGTTGAGGATCACCTTCTTCATGATCAGGAAGGGATT AATATCAAAGAGAAAGATGAATATGCACATGAATTTGATGATGAAGAAAGGGAAACTCCTCAGAAAATCTCTAAGCAATC TCATGCCATCACATCATCAACAACAACAACAACACCATTCATCTTATTATGAATTCTCTTGCAGCAACAGTCCAAACCCT GTTTTCTTCCACATGCCAAAGCGAAAGCACCACCGTTTCAACTTCCCCTGCATCCAAGCCCCTGAGGAATTTGAAGAGGG ATCTCAATTGTATTTGTCACCGCTTAAAGTTGAAAATGATGATGTGCCTAAGGATGTGGCCGTGGTTCCTCCCAAGACCC CAGAATACACGTTCAACTTCCGGTTCGACGCGACCGAGTTTGCTCCTGGGGAGAGAAAGAGTATAACTCTCTCACCGTTC TCAGTGAGGGTTTCCAATTACTCTGCATTGGAAGAGAATGAAGAGGTTGGAAGTGGTCTAGTTGATGATCAGGCTGAGGA TTTCATCAGAAGGTTCTATGAACAGCTAAAGACGCAGAGCCGCGGGCAATTAGCAGGGTTTTAA
Protein sequence (LotjaGi1g1v0636700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVHSQVAAKRLWNVLRITFFMIRKGLISKRKMNMHMNLMMKKGKLLRKSLSNLMPSHHQQQQQHHSSYYEFSCSNSPNP VFFHMPKRKHHRFNFPCIQAPEEFEEGSQLYLSPLKVENDDVPKDVAVVPPKTPEYTFNFRFDATEFAPGERKSITLSPF SVRVSNYSALEENEEVGSGLVDDQAEDFIRRFYEQLKTQSRGQLAGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 4 | 205 | 202 | 5.3E-72 | – | |
| PANTHER | 4 | 205 | 202 | 5.3E-72 | – | |
| Pfam | 181 | 200 | 20 | 1.8E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0636700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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