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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0639800 |
| Transcript ID | LotjaGi1g1v0639800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT1G09230.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8RWV8|U1165_ARATH U11/U12 small nuclear ribonucleoprotein 65 kDa protein; TrEMBL-Plants: tr|I1ML41|I1ML41_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0639800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:119654299..119661847) extracted from Lotus japonicus Gifu genome v1.2.
CTAACATTCAGATCAGAAACTGAAAGACGAACGTGAAACGGAAACCCCAATCGTGAGCGACCACCACCGTGACTGCGTCT CCGACGACACCACCGTCGCGCCGTCAAATTCCGGTGAAAATTCGATCTCAAAATCCATGGCTGAGAGCCAATTTGGATTT CAAAGCACAGGCACAACAATGGCAGAGTCAAATCCTTCCGCTACCCTTATAATCAAGCACCTTCCTGAAGCCATTCCACA CGACACACTCTCTCGACTCTTGTCCCATTACAACGCTTCCTCCGTTCGCCCGTGCTCTGCTGCAAGGTATTGATATTTCT ATTTTCTGTGTTTTGATCCCTTTGTTTCATAGTATATGTGTTTGTGTTCATATATGGAGTTTGTGACAGAATTGTGGTAT GTTTTTGGGGTGGCAGAATGATCAATGAATGAATTAAATTAAGCTCTGATATCATATCGAGAATCGAAGAATTAGTGAAA GATTGAGAAGTAGAAGCTACGTTGGAGCTTAGAATTTCATTATTCTACTTAGGTCCCGTTTGGGAAAACAGCTTAATTAA GCGACATAAGCGCTTTAAGTTATTTAAAAAAATTATTAAAATAAATTGAAAATAAACTATATATAAGCATAAGCTCTTTT TCATAAGCTATCATGAGTAGCTTATGAAAATAAGCTCAAAACAGCTTATGATAGGCTATAAGCTGTTTGCATAAGCTCTC ACAAACACTGGCATAAGCACTTATGCTATCAGATAAGCTCAAATAAGCTCTCCCAAACGGGGCCTTAGCTTGATTAATAC AACAGTAGCTACTTATAACATAATATACTACACGGTTAGAACTCTAAGGATCTAAAGGAAATGATAGCTATAACTGTAGT TTATAACAGAAAACTGTTTAGATGAAAAACTACAAACAGAAATGTAACTAGCTTGTAACAGAAAGCAGTAAGAATTAACT GCTTAGTGCCTGTTTGGGTGGGTGCTTCCACTGCCAAACGCGCGGCTCCACCGCTTGGATCCGGACGCTCCCAGTTGTAG CTTCTTCCAGTACGCGCGTCCCCACCACTGCTAAAGCAAACAGACCCGTCTAAGTCTAATTACTAAACAGCTATCTTTAC ACATTTTAACACATAAACAAGCTTTTTGAGTTTTTTATTAACTCAATTACTAACAGGCTAATAGCCCACTGTTAAACTGT GCTGCTTGAACCTTGCTTTTATGTCTTTTGGTGGTGGGTGCCTCCAACTACAACTACAAGTTACTCTTAAATGTTCTTTA TTTAATGTCATGGAAGATTTGATTGACACTTGACCATTTTATAATGTTTGATCCAATGTATTTGTGTTTGTGAATACTGT CAAATGATGTATGAATGATAGTTGATTGATTGAATGCAGGTTGAGGAATTGTGCTTTTGTGGATTTTAAAAATGATATGC TGGCGTCTCAAGCACAGCGTCAACTAAATGGGTATTATTTCTTGAATCATTTGCTTACTTTATAAAGTTTCAATTTATTG GAATAAATTGATTGTATATTTGAAGAGATGCCCTTGGTTTTTAGTGATCTATTTTGATTTAGTGATATCCTTTCTAAATG CTCCCTGATTTTGCAACAGTATTATAAAGAATACATACCAATAAATTCTTTTTGAGTTGAAGATGAATTCATTAGAAACT AAATGCTTTACTTGATTTGCTTCTCCAGGTTGAGATTTCTTGGCAAAGTCTTGTCAGCAGAGAGAGCTAACCCAATTGAC AATGGTGAAAAAAGTAGTGGTGCTCAGCAAGGAAAGGACTCTAAAACATCAGTGGTAAATGTAACCAAATCTGTTGATGA AGATACAAAATCAGCAGGCCTCCCTACTCCTCAGCCAATTGCTGATAGACTTGGTGTTGATTATCCATTTCCTCCTCATC TTGAGTATGCTTCTATTTCTTACTTTGCAACTATTAGTGCTTGTTACTTTGTTGCAATAGGAATATAGGATCTAAAGGGC TGCTTGCTGGTGTGTGAATATGGTAGATGATTTAACAAAATGAAATGAAATGAATACAGAAGGAGTTACTGTAAATGATT CTATGGTCATATGTTGTTGAGGTTGATGGGATTGACTCTTGAATCAATTTAAAAGAGTTATTCCGAGAATTTCGTGCCAC AGATCTATTGGTGTAAAATTTGGCTTGACAATATATATGTCTTGAACAGAGAATGACTTTCATGGATAAGCAGTTTATAT TCTATATGTTCTCCCTAATCTCTCTTCATCTTCTTTTGAATTTTTGTACTCACTTAATCTTGTTCTGTACTTCTGTTTGA GTGTTTTTTATTACATGTGAGATGTGAGTCTAGAATAATCTTTAGGCAGTGCAGAATGTCATTGTAACATCACAACATGC AGTACTTTTCAATGGGTATATTTGTTTTCTTTCATTTATGATATCAATGATCTAGATTTTTGGTAATTATTTTTGCCCAT TGAGTGCCGTAGCTATTAGAGCCTTTTCGGATTGAAAGTTAAGATGATAACTATGGATAGCTTAAGCGCATGTTACTTCA TTAGGTAACTATTATTGAGTGAAGTTACTTTTTTTAGTGTCAAGCTGCTAAATACATCAAATAAATTTGAGATCGTTAAA TATAGTAAGTAGAGTTATTCTAGCAACACACTCTTAGATGCACTCTTTTTAACACACTTATTTTATTCGGTGAATTTTGA ACTCTCTTTCTACAAAAAAAAAACTCTACCCACTCTCATTTTTAGTTAAATCCACATAAAATTCATGCAATAAGAAAATG TGTGTGTATTTGTGTGTGCCAAGGAATGCGTAGTATTTCACAATTCACATGTTTTCTAATTCTATCGTGTATGCTGTTAT TGATCATGGAAATTGCTATGCATGATGATTAAGTTTGTATAAGCCTCTTTTCAGCGTAGAATCATTTTGTTTGGTTTGCA TATAGTCCAATTAAACTTGTTTTTCAGGTATGCATACCCTCCACCTGATGGAAATATACTGACCAACATTGTGAATGCTC TTATTGCCGTTCCCCGCTTTTACACTCAGGTTATTCCAGTATAAAATGAGGCTGCAAGAACTTACTAGTTTCTTTTTCAC CACCTGTAGCATTTTGTGAGTGTTCATTTTATACAGAACCAATCATATTGATTGTAGCTCTCTAATATAGGTTCTGCACT TGATGAACAAAATGAACATTCCGGCTCCATTCCGTATGGCACTGCCCACACCACCATTACCGCCAGAGGTGCCAGCCCCA CCACCACCTGTGCCTCCTCCTCATCCTTCTGTAACTGCAAAACCTCAGTCTGCAGAGCTGTCTAGTGATGAATCGGAGAT GGAATCTTCAGATGAGGTAACATGCTCACTGCTTCCTTGGGATCAAACTTTTGGAGCCCATGTTTCTTGCTTAATTCTTT GTGTAATTGCATATAAGGCACAGATTTCTTGTCGTATGCTTTTCCTTAATGTAGTATTTCTTGTAAAATATCTTTCTGAC CTCACAATGTGCTTAGACTGTACCTTCCTGTTGCCGCAGTTTGAGAAAATTCTTATTGAAGCATAATAATATTGTGTAAA TGAATATAAAACTGTAAACTATGTTGTCAATAGGTGATACTTTTTCCTATCATTTGGTAAAATTTGATTGTTAAAGGAAA TTAATGAAAGCCTTTTAGGAAGATGGAGCAAGACGAAAGCGTGCTCGGCGTGAGACTATCGTTGGCCCTGCCATTGATAA AGATGTGGCTCATGAGTCTGTTGGAGTAAAGCCTGCCACCTTGGTCCCAAAAGAAATTCCAATGATAAAAAAGAACCCCG TCTTAAAGGTATTTTCTTTCCTAGAGATTGGTTTCAGCCTTCTAGGAGCATGTTAAAATTGTTTTTAGCTTATTTTTTGT CTTCATGATTTACAGATAAAAATTGCTCCCAAAGCAACCCTGAATGAACATAAAGATGATGATACGAAGCAAGACTTACA AGAGCCAGAAAACGATATTCCAGATACTAACAAATTTTTGACTCCTGATGAATTAGAGAGAGGAAAGTTGCCTCCTGAGG AAATCTTATCTCTTCCAATGTTTAAGGTATGGATGTCCAATATCTACACTTTCGGAAGTATTGCATTCACATTTCTTTGT AATTGGGAGAGTTCGCTCTTGATCTTTCTAATAAAATTTACCATTATTTATTACTACTGCTATTTCCTTCTTTTTTTCTT CTGGACTACTGAGTTCTGTAAAGTGAATAATCTTTAAATGTATCTGATGCATTGTATTGTTGGGATTTTACATGTCTTAA TAGTGTGCGAATAATTCGATTTATGAGAGCTTCTGCAGTGCACAATCATATGTTTATGTGACTTATGTTTTTGAACTGAT GGATTGTGCAGAACTATACACCAGGAAATCCTGCTCCCGTGTTGTATATAAAAAATCTGGCAAAGGATGTGATTGCTGAT GATTTCTATTTTATATTTGGTGAGCTCTCAAGACTTCCACTGGATTCTGGTTTTGTTTAACTCTTATCTTGCAATTTGAA TGCTCTACTACCCAAAAATGGAATATAATGAATTCGCCCTCCCCCTGCGCCAAAAACAAATGAAATATTGAAATAGTTTG AGAATTTCATAATACAATTATTGGATGATGAATTGAATGGTAATTCCACTGCTTACCTGATTTTTCTTGAATTGACACAG GGTCCCTGTTTGGAAATATTGAGGATGCAAAGTCTGGTCTTCAAGTCAAACTGATGCAGGTGTAACATCTTGATAATTCT ATTATCAAGTTTTACTCTTTCTGTTTGTAATGAACTGACCATTCCAAAAGTTTGAGTGGTTGAGAAGACACATGGTTACA CTATATTTCTAACGCACTCCCTTACACAAGAGCCATCTAGGATTAAAATGTGGACATTGCACACAATCACCTACCTTCTT TTGAGATTCAACTTTTTAATTAGTAGAATGGCAATGTGATATGGTATCAAAACCTCTATAACCAAGTGGTCTAGAGTATG ATCCTGTCATCCCCCCTTTTTTATGTTAAATTTCATATTAGGTAGGTGAGCATGTGCACTGTCCAAAGGTAGATGGGAAT GTGGAATGTTCCATGTATCAGTGTGGCCTTTACCCAAAAGTTTAAGCTTTTGGGATAATTTGTTGTATGACAATAATATA AAAGCATTCATATGTCTTCAAGGCACATGAGTGGTTTTATATTATATCTCTAACACTGTTGTGCAAAAATAGATCCATAA TAAATATTAACTTGGTATAAGATGATCCAGTTGAATAACACACTGGTGGGGTTTACTTGATCCAGAGTGCTTATTCAATT ATATTACCCCCATGAAAGTCTTGTGCGTAGCAGCTTATCTGTGAACCCTGAAACTAAGAGCTAGTTTTTTATTTCAGGAA GGAAGGATGAGGGGTCAAGCATTTTTAACATTCCCCTCCACTGAGTTGGCTCATCATGCTCTGGTATGTTTCTCACATGA GATTGGTTTTCCTCTTTCAAGTGTCAAACAAATACTATGATTTATTCAAGATGATTATTCAGTTTTTTCTTGCCTTCGTA TTGCAATCTCTTTTCTTCTCTTATAATTTTGCAAAATATGCAAAGTGCATGTTTGGATACACAGTAGAAAAGTAAGGAGA AACTAAAATCACGGTGGACAGCCACAAAATTCAAGGGAAGTTGTTTTTGTCACCGTGATTTTAGCTTAGCATGATTTTTC ACCATGTATTGAAATGGAAAATCAATGTTGGGGAGTTTGTTACAACTGCATGTGTAGTGTGGAATGCTAATAATATTCTT CTTAATTTTAACGAAATGTGTTGATAAGAATAGGTTGATCAATTGTTTATTATATTGCATATTACCATTGGTTGCAGAAT CTAGTGAATGGGCATGTATTTAAAGGAAAGCCAATGATCATTCAGTTTGGTCGGAATCCTGCTGCTGCCAAATAAACTTA AAATCGATCGACACGGAAGGGATGCATTCCAATGTTTTTGCTTTGAGAGGCACATGATTGTGAGTTTGCTCATCACATGA TACATGTATAGCAACAGATGGCTAATGATGCTTTTTTCATTCGTTGACTGGGAGAGATAACACCAAAGCTTGGACAACAC TCAAGAATGGTTGTGAAATGGATGCTTACACATGCATTCTCCTTGGCCCTGTTAGAGTGAGATGCTGAGATAAACTAGTC TGCATGCTAGATGAATCTAGTTCAGGTTGCTGACAAGAGGCGTTGGAACTTGGAAACCCAGACTCTAAAGGCACCCTGAG AGTATTGCTGTCATCATAGACACAAATTAAAGGACCCTCTTGGTTAAATTAAGCAATAAGCATAGAGAAATTTTGATGGT ACTAGGTTCATTTTCTCTGTAAAAGCAAATTAGGGAACTTGACTTGGCTCCAGAAACAGCAATGTGAGCTTTGGAGCTGC ACTTGGTCCATTTGGTGTTTCTCTCATTCCGCATCTTGTACATTACATTGAATTTAGATCTGTGTATCAATATGTCATTC GACCTATATATCCATTAATTTGGAAACGTTTTTTATTGATTTTTTTTTACAAGGCTATTTGTTTTAACAAATATTTGAAG CTCTTTCAAAATGACAAACACTAATCACTTGAATTAATCCAAACAAGGCCAAGTTATTTACAGCTCCCAAGTATTCCTGC ACTGACTTGTTCCCATATGACCATAGCATATAGGAGAGGGTTTTTTTTGGGGTTAAGAAATGAAAATGACCATATCATAT AGAAGAGGGTTTTTTTTTGGGGGTTAAGAAATGAAAATAAGTCTTCCGAGCCATTAGATAAAAATGACTTAAAATTAAAA CATTCAATTAATGAGCAAGTATTAGGCTTATGATTTATGAACAATATTTGGATTTCCAGATAAATATTGTACATCATGGC CCAAGGCTACCAATTTTTGCAATTTTGGTTGTGTTAATGTATTATGTATGGGCATACAGTGATGGATATACTCACAAGAT TCATTAATCGGGTATTTTAATTTTAATCCATGATTTTGATCTAAGGCTATAAGAGCTTTCCATAACCACACTAATTAAGT CCTCTCATATTTCTAACCCCTTGCAACAAAGTGCATCACGTGAGAGTTGAGACAGAGGAAGAATTAATTTTTGCCTAATT CAATTTCACATGATAATCTATTCATATAGGGGGGAGAATGTAGAAGAGAGATTGAATACACAGTCTAAGTGTGATTTTAT GTTGTTCAATGATAAGTTTGCCACTCGCTTGCAAACCATCCAAGTGTCATCAAATATGTCTTTCAACTGGGTTTGAACAT CAACTTCTTCAATGGGATGATCACAATACTTAGCATGTCAAAACTGTCAGAGAAAGGGCGGAAATGTCTCGCTTTGGTCC CTTTCTGAACTTGTCATTGGAAGAAATGGCTGGAAAGATCAAAGATGGATGGGATGGGATGACCTGCAAAAACATTGATT CACTACATGTAAATAATCCAAAAGCACTG
CDS sequence (LotjaGi1g1v0639800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAGAGCCAATTTGGATTTCAAAGCACAGGCACAACAATGGCAGAGTCAAATCCTTCCGCTACCCTTATAATCAA GCACCTTCCTGAAGCCATTCCACACGACACACTCTCTCGACTCTTGTCCCATTACAACGCTTCCTCCGTTCGCCCGTGCT CTGCTGCAAGGTTGAGGAATTGTGCTTTTGTGGATTTTAAAAATGATATGCTGGCGTCTCAAGCACAGCGTCAACTAAAT GGGTTGAGATTTCTTGGCAAAGTCTTGTCAGCAGAGAGAGCTAACCCAATTGACAATGGTGAAAAAAGTAGTGGTGCTCA GCAAGGAAAGGACTCTAAAACATCAGTGGTAAATGTAACCAAATCTGTTGATGAAGATACAAAATCAGCAGGCCTCCCTA CTCCTCAGCCAATTGCTGATAGACTTGGTGTTGATTATCCATTTCCTCCTCATCTTGAGTATGCATACCCTCCACCTGAT GGAAATATACTGACCAACATTGTGAATGCTCTTATTGCCGTTCCCCGCTTTTACACTCAGGTTCTGCACTTGATGAACAA AATGAACATTCCGGCTCCATTCCGTATGGCACTGCCCACACCACCATTACCGCCAGAGGTGCCAGCCCCACCACCACCTG TGCCTCCTCCTCATCCTTCTGTAACTGCAAAACCTCAGTCTGCAGAGCTGTCTAGTGATGAATCGGAGATGGAATCTTCA GATGAGGAAGATGGAGCAAGACGAAAGCGTGCTCGGCGTGAGACTATCGTTGGCCCTGCCATTGATAAAGATGTGGCTCA TGAGTCTGTTGGAGTAAAGCCTGCCACCTTGGTCCCAAAAGAAATTCCAATGATAAAAAAGAACCCCGTCTTAAAGATAA AAATTGCTCCCAAAGCAACCCTGAATGAACATAAAGATGATGATACGAAGCAAGACTTACAAGAGCCAGAAAACGATATT CCAGATACTAACAAATTTTTGACTCCTGATGAATTAGAGAGAGGAAAGTTGCCTCCTGAGGAAATCTTATCTCTTCCAAT GTTTAAGAACTATACACCAGGAAATCCTGCTCCCGTGTTGTATATAAAAAATCTGGCAAAGGATGTGATTGCTGATGATT TCTATTTTATATTTGGGTCCCTGTTTGGAAATATTGAGGATGCAAAGTCTGGTCTTCAAGTCAAACTGATGCAGGAAGGA AGGATGAGGGGTCAAGCATTTTTAACATTCCCCTCCACTGAGTTGGCTCATCATGCTCTGAATCTAGTGAATGGGCATGT ATTTAAAGGAAAGCCAATGATCATTCAGTTTGGTCGGAATCCTGCTGCTGCCAAATAA
Protein sequence (LotjaGi1g1v0639800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESQFGFQSTGTTMAESNPSATLIIKHLPEAIPHDTLSRLLSHYNASSVRPCSAARLRNCAFVDFKNDMLASQAQRQLN GLRFLGKVLSAERANPIDNGEKSSGAQQGKDSKTSVVNVTKSVDEDTKSAGLPTPQPIADRLGVDYPFPPHLEYAYPPPD GNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPEVPAPPPPVPPPHPSVTAKPQSAELSSDESEMESS DEEDGARRKRARRETIVGPAIDKDVAHESVGVKPATLVPKEIPMIKKNPVLKIKIAPKATLNEHKDDDTKQDLQEPENDI PDTNKFLTPDELERGKLPPEEILSLPMFKNYTPGNPAPVLYIKNLAKDVIADDFYFIFGSLFGNIEDAKSGLQVKLMQEG RMRGQAFLTFPSTELAHHALNLVNGHVFKGKPMIIQFGRNPAAAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 117 | 106 | 2.8E-10 | ||
| PANTHER | 14 | 445 | 432 | 7.3E-191 | – | |
| PANTHER | 14 | 445 | 432 | 7.3E-191 | – | |
| SUPERFAMILY | 20 | 440 | 421 | 4.14E-20 | ||
| ProSiteProfiles | 22 | 96 | 75 | 9.814 | ||
| SMART | 23 | 92 | 70 | 4.8E-5 | ||
| Pfam | 24 | 89 | 66 | 4.8E-7 | ||
| MobiDBLite | 95 | 117 | 23 | - | – | |
| MobiDBLite | 100 | 117 | 18 | - | – | |
| MobiDBLite | 203 | 262 | 60 | - | – | |
| MobiDBLite | 203 | 222 | 20 | - | – | |
| MobiDBLite | 241 | 262 | 22 | - | – | |
| MobiDBLite | 302 | 331 | 30 | - | – | |
| Gene3D | 354 | 445 | 92 | 1.5E-16 | ||
| ProSiteProfiles | 358 | 440 | 83 | 13.839 | ||
| SMART | 359 | 436 | 78 | 9.5E-10 | ||
| CDD | 359 | 438 | 80 | 3.25208E-37 | – | |
| Pfam | 360 | 432 | 73 | 2.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0639800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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