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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0644700 |
| Transcript ID | LotjaGi1g1v0644700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding family protein isoform 1; TAIR: AT5G32450.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9LFD5|BPA1_ARATH Binding partner of ACD11 1; TrEMBL-Plants: tr|I3SA27|I3SA27_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0644700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:120204222..120208643) extracted from Lotus japonicus Gifu genome v1.2.
CAGTGAAATTGGTTAAGAAGCAAAGGGACAAACCTGGAAATACAAGATTCATTGCATTCTTGTTTTCTTTCTTTCGGACT TTGACGAGGTACATCATCATTACATTCCTTGTCTCTCTTTCTTTCTTTCTTTCTCTCCTCTTGTGTCTGTCTCTCTGCTT CAATTTCAATGCAACTCTTTCCTCTTCGCTGACACAAAATCACTCTCAACTCAACTCACACCCTTCTCGAATAGTACCAT CACTTTCCGCTACGCAAAACCCCTCCTACTTCAATTGCAATGCAGGTTACTTCAACTACCTCAAGCTGCTACTTCTTCTT CTTCTTTTTCCCATTCAAAATCCCATGTTTTTTCACTTTTATGCTTGTTACTTGAGTCTTATTGGGTTTTCTCTTTCTGG GTCTCTCCAATTTTCCTTCATTATTGCAGACTAGGACTGTTCAGGTGAAGCAGGTTTCAGATCTAGCTGGTGAAAGAGAG ATTCATGAGTTTTTCTCTTTTTCTGGTGAAATCGAGCACGTTGAGATCCTCAGGTTGGTAATTTTTTGTGCTAATTTTTT TTTTTGCTACCCCTTGAATTCAATTTTTGTTAGTTTCAATCTTCACATCATTGAGGATGCTCAGAAAGTAAGAGTGGAGG GTTGGGGGTTAGAAAAGACAAACAAGAAATCACGGGTTGCTCTGAATTTTTGATTTTAATGATATATAAAAATGCATTAA TTACATCAAAATTAAGCAAAGCAGAATAGGACAGGTTAATAGGGGCTAACTAGAATCTAGATAAACTTAGAATTCTGTTT TCTGGAATTTGAATTATTCTTTGGGTAGTTAAATGATCTATGCCTTAAATTTAGCTCATAGAGAAGTGAATTTCATGTTA TTATGGTTACATGTTTTGTGTCTGCTTGTTGCAGTGAATATGGGAAATCAAAGACTGCATTTGTGACATTTAAAGATGCC AAAGCGCTTGAAATTGCATTGTTGTTATCGGTAAGGTCTCTTTTCTTTTGATAATTTTGTTAGTGGAGCTGTGGTAAATT ACCAGTTGTCAAGTTCGATTAATAGTAAAGAGAGGGATTATGTTTCATTTTCATTTTATGCTAGCATTTTAATTTGGAAC AACAGATCTCTTGCTTGCAATTAGAATTACAAATTACAGAGCCCCAACTTTTTCATAGAATAGCTCTATTTCTTTATGAG TATCTATTTGGATTTCTCATTAATATTGAGTCAATTCCTTACTCTTTCTCACCTGTAGTCTTACGTCATGATCATATTTT GATCTTGATATCGAGCTGGAATCCTATATATGCCTTTTCACTTTGTGGTTTGTGAAAGTGAATCTTCTGTTGTCTTTTTA TCAGGGAGCAACCATAGTAGACCAGATTGTGAGTATAACTCCAGTTGAGAACTATGTACCAAATCGTGAGATGCTGGTAA CTATACCAATAACTTCTCTATTGATGTGCACATATTGATATGAAATCTGAAACTTATCAAAATCAATTTATGCAGGAAGT AACGGTGGTGGAAAATGCTATAAATGTTGCTCCTGAACATGTCTCGTTGAATATTGAGGTAAAGACCAAAGTCCAAATTT AAGATTTTTGCATCATTGTTTTTTCCTAATGAGTTGTTCTCCATGGGCATATGGAGTTAGCTTGAAAGGTATTGAAATTA TTTTGTTATACCCAGGGCTTTATTGGTACATTTGAGTGCGTTTTAAATATACCGGATTACTTTGACATTGCAATTCTGTC AAGTTTTTAAGTAAATAGTTCAATGATTATTTTTTTAAGCAAGTTATGTCGGTAACAATCTAACTATTTTTAGGGCTTTT CACATTGGATTTGGCCTGCATTACTTGCTTGTAATCTTCAGCAGTCATTCTATTTTATTTCATAGCTTGATAATAATTAC TAGAACTGTTCCTGCTTTATTGTTCTGAGCCATACTGCAACTCTTTCAGGAGGAGAAACCCAGCTCACCCAGCTCTGTCA ATGGAAGAGTGTATCTTAGTAGAGCACAAGTTGCAGTTAGTAGTATGCTGGCAAAAGGTTCTGCAATAAAGCAAGATGCC GTAAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTTCTAATGCATCTGCAAAGGTGATTTCTTTTGACAAGAG AGTTGGATTGACAGAGAAATTGACAGTTGGCCTTTCTGCAATGAATGAGAAAGTGAAGTCTGTGGATCAGAGGCTTCATG TTTCTGATAAAACAATGGCAGCTATATTTGCTGCTGAAAGGAAGTTGAATGATACTGGATCAGCTGTCAAAACAAGCAGG TTTGGTTGAATATGATACTTATGTCCATTGCAGCCTCTGCACTTTGTGTTCTTTATGAAATTGTTATGATTTGTTGGAGA ACTAGGATCCCTAGGGAAATATGAAGTGTTAAAGAAAAAAGAAATTTAGATGTTTGTAGAGAAATGACCAAAAATACATA AAACTATTTGGATAAAGAGAAATGTCACTTCAACGTGATTGGCTTAATTTTTAAAATGTCAACACATTTTTTAATTAGAG AAATATGTTGACTATTTTTAAATAGACCAATTATAGGGAGTGTGTTGCTAGCACTCCTCTTGGATAAAAGAGCAAACCTA GTGCTGTAAAGCTGCCCTGTGCATGAGTCCAAGGGGGCGGATCCATTTGTGGATCTAATGTAGGCAGTCTCACCTTGTAT TTTGGAAGAGGCTGATTCCACGACTCGAACTTGTGACTGCAAAGTCACATGGCAGTAATCTTACTGTTGCACTGAGGCTC GCCCTCACATCTCCTATTTGGATGTTGATGATAAAATGTATGCTTCTAATTCTAAATGGCTTACTCTCTTCTGCAGATAT GTGACTGCTGGAACATCATGGTTAAATGGAGCTTTTAGCAAGGTGGCAAAGGTTGGACATGTTGCTAGTACTAGGACTAG AGAGAAGTTTAATATGGCTGTTTCAAACTTGACAGCAAAGGTATAGGATATGCTCTTGCCATGTTTGTATAAAGAAGAAA AGAAATTTTAAAAAATGTTCAACTAAATTTTCAAGTTTGATTGATTGAGTCCTGAATGATAACTTGGTTTCATTCATTGA TGCAGGATTCTCCAGTGGCTGCTGTATAGACCAGAGTTTTGATGATCAAACTTTCTTCATCAGTCTTAAGTGATGATCTC TTTAAGAGCATGCAAACAAATTGGTCTGTCAGATTTCTTTCTGTCCTTCAACAGTTGAAATGCATTTGGAAGTATGGTAA TTGGTTATTCAATTTAATCCTATTTTTTGTATTCTTTTGTCCCTCTTCTGTGTTAGTTGTTGCTTCTATGTAATCTAGCA TTGGTAATATTATTTTTTGGGTGAAGAGGAAAGTATAGGTGTGATGCAATGTATTTGTTTTTTCAAAGTTCAAAAAATTA GATGTGCGTGTAAGATTTGCAATTTGTTCTGTCATCAACATTTGGAAGATTTATTGGGGAGATTATTATCTTACTGGTTT ACAGAATTTTATTTCTTTGCTGATACAATTGATGAAAATTGTAAATAACTATGATGTATTGGACTATTGGCTGAGTTCTT GTGTGCAAATGTGTGGACATTTTAAAAAAAAATGAATCATGGAGATAAGATTTAGCACTTTTGACTATGGTCAAGACTCA AGAGTGGACACTATCATTTGGATCCTATCAGGCGAAATAATGGAAATTAGCGCACTTTTGACCATTGTGATGATGGCTGT CGGGTAATTAAGAATATTCTGAATACAGTTTCAAACACTATCATCTGACATGAGAATCCCAAGTCCTCTCAATCTGGTAT CTGTCCCGCCATTTTTTTTATAACTAATTCCAAGTGTTCTCCTTCTTCATCTGACATTCTGACTTAGAAATAGTTAAATA AAAGGATTAAATATATTTTTCGTCCCTGAACTAATAATTAAAGTGAGGATTTGGTTTAATTTTCCTCTTGTAACAAAAAA AAAAAAAAAAGTGAGCATTTGGTTTTTATCCTTTTTGTTTTTCCTCCCTTGGTTTTGTTTTAGCCACTTTGACTAATGAT TTGGAGCTCCAGTGTGTAAGTTACATAAGTGGTGCAATTTTATACCACTTACTTTGACCCTTATAACATGTCAACACATT AATTTTTAAAAAAAAAAATATCATTAAAAATTTGTTATGTATTAAATTTCTTTAAAAAAAGATGTGTTGACCTGTTATAG CAGGTTAAAAAAAAGTGGTGTAAAATTGCACCACTCTAAAAGTGGTGCATATTAGAGTTCGCCTATTTTTATTACACGTG TGAAATATTAGAGGGACAAAAAAAATCATCTCTCATCATCTTTATCCGTCTTCATCTGAATCTGGCATGTAGCTTCATGA TTTGAAGTGAACCGAGGTCACA
CDS sequence (LotjaGi1g1v0644700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGACTAGGACTGTTCAGGTGAAGCAGGTTTCAGATCTAGCTGGTGAAAGAGAGATTCATGAGTTTTTCTCTTTTTC TGGTGAAATCGAGCACGTTGAGATCCTCAGTGAATATGGGAAATCAAAGACTGCATTTGTGACATTTAAAGATGCCAAAG CGCTTGAAATTGCATTGTTGTTATCGGGAGCAACCATAGTAGACCAGATTGTGAGTATAACTCCAGTTGAGAACTATGTA CCAAATCGTGAGATGCTGGAAGTAACGGTGGTGGAAAATGCTATAAATGTTGCTCCTGAACATGTCTCGTTGAATATTGA GGAGGAGAAACCCAGCTCACCCAGCTCTGTCAATGGAAGAGTGTATCTTAGTAGAGCACAAGTTGCAGTTAGTAGTATGC TGGCAAAAGGTTCTGCAATAAAGCAAGATGCCGTAAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTTCTAAT GCATCTGCAAAGGTGATTTCTTTTGACAAGAGAGTTGGATTGACAGAGAAATTGACAGTTGGCCTTTCTGCAATGAATGA GAAAGTGAAGTCTGTGGATCAGAGGCTTCATGTTTCTGATAAAACAATGGCAGCTATATTTGCTGCTGAAAGGAAGTTGA ATGATACTGGATCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACATCATGGTTAAATGGAGCTTTTAGCAAGGTG GCAAAGGTTGGACATGTTGCTAGTACTAGGACTAGAGAGAAGTTTAATATGGCTGTTTCAAACTTGACAGCAAAGGATTC TCCAGTGGCTGCTGTATAG
Protein sequence (LotjaGi1g1v0644700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTRTVQVKQVSDLAGEREIHEFFSFSGEIEHVEILSEYGKSKTAFVTFKDAKALEIALLLSGATIVDQIVSITPVENYV PNREMLEVTVVENAINVAPEHVSLNIEEEKPSSPSSVNGRVYLSRAQVAVSSMLAKGSAIKQDAVNKAKAFDEKHQLTSN ASAKVISFDKRVGLTEKLTVGLSAMNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLNGAFSKV AKVGHVASTRTREKFNMAVSNLTAKDSPVAAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 271 | 271 | 2.5E-130 | – | |
| PANTHER | 1 | 271 | 271 | 2.5E-130 | – | |
| SUPERFAMILY | 3 | 81 | 79 | 4.75E-10 | ||
| ProSiteProfiles | 4 | 78 | 75 | 9.524 | ||
| Gene3D | 4 | 74 | 71 | 9.3E-8 | ||
| SMART | 5 | 74 | 70 | 4.3E-6 | ||
| Pfam | 9 | 66 | 58 | 1.7E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0644700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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