Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0652100 |
| Transcript ID | LotjaGi1g1v0652100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Far1-related sequence 3; TAIR: AT2G27110.1 FAR1-related sequence 3; Swiss-Prot: sp|Q9ZVC9|FRS3_ARATH Protein FAR1-RELATED SEQUENCE 3; TrEMBL-Plants: tr|G7L2P8|G7L2P8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0652100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121150614..121154844) extracted from Lotus japonicus Gifu genome v1.2.
GGCCAGCAAGTATTCAACAAACCCTTTAAACCCTTTCTCATAAAGAGAGACGCTTTGCTACACATACAGAAACCTGAAAC CGAGGGAAGGAGGAAAACAGAGTTCAGCAGTTCCTTCATATCATCACAAATCACAATCACCATCACCATCACATTGATTG ATAATGGAGGAAAGTGAAGGATTGCAGCTACACCTGCAACTACACAAACTCTCATGCATTGAATCTGAACAAACACTGGA CCACATCCTCAACACCCTCTGGACCACCAGAAAAACCGGTCTCCGCCCACCGGAGAAGTCACGTTTCCAATCCCTCCTCC ACCTTGCTTCTCTCTCCGAACTCGACCCAGTACAGCAATGCAATTGCAATGCAACCCATTTTCTTTTCTTTCTTCTAAAT TTCGTATTTTTTGAATGAATCAAACCATGTTGCAGGTGCTGGTGTGCCTTCGGTGGCTTATCAGAAAATTCGTTTATCAA AACTTGACTGGTGATGAACTTGTGAAGCTGTTTCCTCCTGATCTTCCACTTCACCTGCAAACCATTCTCTTGCTTTGCTT CCAGAAAAATGGACAGTGCTGGAGGGATGATGTCTCTGCACAACAGGTATTCTAAACACACTTTTAGTACTAATTAAACT AAGTACCAACGAGGTGTAGCACAGCTAGTAGATAGTCGAGCTCCTTAAGCGTCTAGTCTAGGGTTTAATTCCTGGGCGGT GCGTATGGAGAAACATTTGTTGGGAGAGGCCTACCCACTTAACATGACCCCAGAGCCTCGAGAGAGATTAGTCTCATAGC TGCCTGTGGGGATCCTTGGGAACAAAAGAAAAAGTACTAAGTTGAATTTCTCAGCTTTATTCAATGCCTTATAGGGTGTT TTTGGATGATTGTTTCTAAACACAAGAATTGATTTTCCAGTGTCAACATCAATTTTTGGGTGTTTGTTGCATGTTCAATT TAACAGTTGATTCTATTCTAGCTTTCAATTTTGGGATAAAACAACTTCTGCTGTGGACATAATCAATGGAAGGATATCAC AACTCGATTTCGCAACATTATCTTAAAAAATGACTTTTTTCATTGATCTATTTAAATATAGATCACATCACATCACTTTC AACTCAATTTTTTGTAACCAATAATCAAATCTGACAACACTTGTCCAAACATGCATTTAGCTTACCTCGGTTAGGTTCAG TTTGGTTATTGATTCCCATATAGTCAGCAAACTTACGTTTGAGTTGCTCCTAATGTAAGTTTAGAGACAAACCAAACAGG TCCTCAATATTGTCTTAGCAATTGGAGGTAGGTAGAGTTGGTTTGGATAAACTTCTCAACAAGCAATTACAGGCGAGGAA CGGTAGAATCATAGAATGAATCAAACTCTTCACATTACCTGAAATTAGTTTATCATTATGCACTTCAACTTTCTTACAAG TTCCATGATGTAACTTCTTCATGAAGGCTTTTTTCATGAGTTAGGAATGGAATGCTTAACTCTCTATTGAAAAGATCTTA TAAACTAGGAGCAAATACAAATTAGAAGTCACTCATCTTATCATTTGCTTTTATATGTGCAGGATTTGTTACCAGCGACA GGGGTTTCCAGTGAGGTCAGAACAGATATTGCGCCATCTTTACCTTCACTGCCATCTCCAGTGATGTCAACACCTCTCTG GCCACGCCAAGACCCTGATTCTCTTGCCCAGATGAATCAAAGTGATTTTGGAATATCAACACCGCTTGTTGCTGATTGTA ATGTGTCAGGGCTGCCTGCATGCTTCCAGTGTGATGTTGCTCCTTTTGAGAACTCGGTACTTGAGGAGCATTGGTTTTGT GGTGTCTTCTTATTTCTTTTGTCAACTATCGGATCTAATTTTTCATTAGATGCATATCTTCTCTTTCAACTATTAATTTT TGCTAGAACAACAATTCCAAACTGCACAGTCCATTCTTTTCTCAAAGAGAAGTGACTTGAGTTTCACTGAGGTATGCTTA GTGGACTATATGAAAATGGTTTAATGTTCTGCATCATGAGTTTCATTCCACAGCATAAATTGTTGTGGTTCCTGGCACTA TGATGTTTTAAAAGCTCTGGTGCTTGGCAGGTGGTAAGAAATAAGTAGAAATGACATGACAGCAATGTGCGCATGAATAA AGGGAAATTGAAAAAATAGTTTAATAAGGAACCTTAGAATGGAATATGTAGTTGAAAATGGGCTTTGGTTGGCTAGATTT GGGGATTGGTTATAAGATCTTATGATATATGCCTGGTACTTTTTCCAGTGCAGAATTAAGGTGTAATGTGGACAACATGT GCGCCTGTGACATATTTGATATTTCAAAAGTATTTTATCTTCTGGCTATTTATATTTTTTTCTTTGTTGTAAAATGAAAT CATAGGAAAACCTTCCTTTTCTCAAATCAATGACTTGGACCATGGAGAATCGCGGCTCATCCCCTGCAGATAGAGTGGCT ATTATCACTCTTAAGGTAATGAGGAAAAGTCTTTTTTTTTCTTCCTTAAAATATTAATTAAGTTACAACTATAATGAGCA AATTATTTTTTCTATCTCCACATTTTGACAATAAATAGATGTATCAGTTTCTCATGTATAAAATTTATAACCTTCAATAC CTCGTAAATGTTTCATGCTGGGTGCTAGAGGTGTCTTGTGTAGCGCTGGTGCAGTTTCTAAAACCATGGCATGGTTGCTA TTATAAGCTGCTATGGCAATTATAGACGGTATATGGCTATTACGAATAAAAAGCTGCCTTCTGAACTGTGAAGCATATAA TAAAATTTTGTTAGCAGTGTCAGATGTGATATAAATATTGGTTGTGATGTGATATAAATATTGTTATACTATGAAGAATA TCCTTGTAATATCGGTTTCCTTTCATAGCTGCATGATCGTAGCAAGTCTTCATTAGGCGAAACAGAGGTTAAGTTTCAGA TTACAAGGGATACTCTTGAGGCCATGCTGACATCCATGACATACATCAGTGAACAACTAAGTGCTGTAAGAAATTATTTT ATGCTTAATGGTGATGATCTATTGGAGAATTAACCCTGAATTATCAGAGTTTACCAAGATTCTAGAGTATATTCTTGAAA ATAATTGTTATATGAAACTTGTTTGTTTTGAATTGAAAAGCTTATGATGATATCGGATAAGAGAAAGGAAAAGCAGAGGA CTCCATTAAATTATGCATGGCAATTTGCTATTAACAAATGAAGATGCTGGGTAATCTTTTGCTGCTATATATGTTTGCCT CCCAAATGTAAAGTAACATTGTGAAATCGGTTTGTTAAATATGTATGAAGTGAGTAATGCTATCCAGTGCAATGGATGGA TTTTACTTGATGGTAGGTTAAAAACTTGGTAACACCACACTGGCCATAACTTCAAAGTTTGCAGAAATTTAGGTCCTCTC AGAACTTTTAATATGTTTACTCATGGTTTTCTTTTTCAGCATATTATATGACAGGAGAGAAAACAATCGGGGAATTAGAT GGAGTTATTTAAAAGTTAATTACTTCTTATGCTTTCCAGACAAAAGTCTCAATTACTGAATTTATTGTGTTATTCACGAA TGTGTTTGCAGGTTGGGACTTCTTCTGGGCCAGCCAACAAGAAACAAAAGCAGTAGTTTGTTTTCCTGTAATTAATGCTG TAGTTCATAAGTTTTGATACTTGGTCATATGAAGATAATATTTCATCCTTTTGTACAATGAAACTGAGAATTAGAGCTAG TAACAACTAACAAGAAAGAGAACTCAGGTGTACGCTGTAATGACATTTGCTTTAGGAATATACATTACATGTTAGAACTG ATTTTACTCAAAGTATTTGTGATTCTTTGATGAGTGCCATTAAGTCAACTTCCTGGTTGCTGTAATCAGTTTCTTAAGAA GATTCTTACAAGTGAAAGTTGTGTTTTATGATATGTTTTCTCTTTAAACTTTTGTTTTCTGACACTGCAATAAAGTGAAA AATAGATTGCAGATAACATGTTTAGATTCATGTTTGAACCTTAAAGAATCACTTCTCCCCCTCCAAGAACCTCTTAAGTT ACTTCTACCATGTTACCAAGATTTTTCCGGTTTTTTCTCACATTGAAGGATAAACTGTCCTCATAAAATTCGAGAGGGAA GGAAATTCATCATTGGCCAAGTGTTTAGTGTAACAAATAATATGGGAAACATTATTTATTCTTATCCAGAC
CDS sequence (LotjaGi1g1v0652100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAAAGTGAAGGATTGCAGCTACACCTGCAACTACACAAACTCTCATGCATTGAATCTGAACAAACACTGGACCA CATCCTCAACACCCTCTGGACCACCAGAAAAACCGGTCTCCGCCCACCGGAGAAGTCACGTTTCCAATCCCTCCTCCACC TTGCTTCTCTCTCCGAACTCGACCCAGTGCTGGTGTGCCTTCGGTGGCTTATCAGAAAATTCGTTTATCAAAACTTGACT GGTGATGAACTTGTGAAGCTGTTTCCTCCTGATCTTCCACTTCACCTGCAAACCATTCTCTTGCTTTGCTTCCAGAAAAA TGGACAGTGCTGGAGGGATGATGTCTCTGCACAACAGGATTTGTTACCAGCGACAGGGGTTTCCAGTGAGGTCAGAACAG ATATTGCGCCATCTTTACCTTCACTGCCATCTCCAGTGATGTCAACACCTCTCTGGCCACGCCAAGACCCTGATTCTCTT GCCCAGATGAATCAAAGTGATTTTGGAATATCAACACCGCTTGTTGCTGATTGTAATGTGTCAGGGCTGCCTGCATGCTT CCAGTGTGATGTTGCTCCTTTTGAGAACTCGGAAAACCTTCCTTTTCTCAAATCAATGACTTGGACCATGGAGAATCGCG GCTCATCCCCTGCAGATAGAGTGGCTATTATCACTCTTAAGCTGCATGATCGTAGCAAGTCTTCATTAGGCGAAACAGAG GTTAAGTTTCAGATTACAAGGGATACTCTTGAGGCCATGCTGACATCCATGACATACATCAGTGAACAACTAAGTGCTGT TGGGACTTCTTCTGGGCCAGCCAACAAGAAACAAAAGCAGTAG
Protein sequence (LotjaGi1g1v0652100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEESEGLQLHLQLHKLSCIESEQTLDHILNTLWTTRKTGLRPPEKSRFQSLLHLASLSELDPVLVCLRWLIRKFVYQNLT GDELVKLFPPDLPLHLQTILLLCFQKNGQCWRDDVSAQQDLLPATGVSSEVRTDIAPSLPSLPSPVMSTPLWPRQDPDSL AQMNQSDFGISTPLVADCNVSGLPACFQCDVAPFENSENLPFLKSMTWTMENRGSSPADRVAIITLKLHDRSKSSLGETE VKFQITRDTLEAMLTSMTYISEQLSAVGTSSGPANKKQKQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 7 | 280 | 274 | 6.8E-103 | – | |
| PANTHER | 7 | 280 | 274 | 6.8E-103 | ||
| Pfam | 203 | 267 | 65 | 6.8E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0652100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…