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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0659100 |
| Transcript ID | LotjaGi1g1v0659100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin; TAIR: AT5G06150.1 Cyclin family protein; Swiss-Prot: sp|P25011|CCNB1_SOYBN G2/mitotic-specific cyclin S13-6; TrEMBL-Plants: tr|I3S1U1|I3S1U1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0659100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:121977734..121980776) extracted from Lotus japonicus Gifu genome v1.2.
GAGAATCGTCGCTTCCTTCAGCTTCAAAAGACAAGTGCTTTTCACTCTCCCTTCCCATCTCATTCGCATTCATTCTGTCA GAGAGAAAGAGAGAGAGAGCACTGGTTCTCTTCCACCCAGAACGAGAAGAACGATTTTCCAACCAAGAAGAGTTCGTAGT AATGGCTTCAAGACCCGTCGTTCCTCAACAACCCAGAGGTATTGTTACTCTCTTCCTGAATGATTGATGCGTTTTCGTTT TTCTCTGCGTTGAATCTTTCTGCAATGATCCTTTCTTGCTTTCAAATTCTGTTCTAAGATTGGGATTTGGGGTGCGTTAC TTGAATCTATCTTGTTGATGAATGAATTGTTAGATAACAAGATGTCCAGAATGAAAAATCTTTTGGGGTTTTGAGAATCT GTTCAAATCACATGAAACTTTCAATGTTTCTGGGTTTTGTCACCAATCTTTGAAGGATCCAATGACCCATCTGAATGTTT CAATTTTCTTCGATTTATGATACTATGTGTGCTTGTGAACCAGTGTTTAGATTGAAAGCTATGGTGGATTCTTCTAACTG TTGTAATGTTATGTATAGGTGATGCAGTCGTTGGGGGAGGGAAGCAACAGCCGAAGAAGAACGGTGCAGCAGCGGGGAGG AACCGTAGAGCACTTGGTGATATTGGAAATTTGGATCCTGTTAGAGGAATTGAGGTCAAGCCTAATCGCCCAATCACAAG GTAGTCTCTCTTCCTCTGTTTCTGTTCTGTTTCTTTATCTTTGTCATTCTCCCTATTGATGTATGAATGATTCTTGTAGG AGTTTCTGTGCTCAACTACTTGCCAATGCACAAGCTGCAGTAGCTGCTGAAAACAACAAGGTAAACAAACCACTCTCTAT GTTGCTTGTTTTATTTTCCTTTACTTGTATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTGGCAAGT TGTTGTAGTTTTCTGATCTTTTTTCATTCTTTGAAATTTCAGAAACAGGCTTGTCCTAATGTGGCTGGACCTCCTGCTCC TGTTGCTGCTCCTGGAGTTGCAGTGGCTAAAAGAGAGGCCCCAAAACCAGTTACTAAGAGGGTCACTGGAAAACCAAAGC CTGTTGTGGAAGTCATTGAAATAAGCCCAGATGAACAGATCAAGAAAGAGAAATCTGTGCAGAAGAAGAAGGAAGATTCC AAGAAGAAAACTCTCACTTCTGTGCTCACTGCTCGAAGCAAGGTAGATTATTAAGACCAGAACCTCTATGTGTCTGAATC ATGTTTATGATCTTTTATGTATTTACAAGTTCTTTTGATTTTCTATCCTCAGGCTGCATGTGGTTTAACTAACAAACCGA AGGAGGAGATTGTTGACATTGATGCTAGTGATGTTGACAATGAACTTGCTGCTGTGGAGTACATTGAAGATATCTACAAG TTCTATAAGATGGTTGAGGTAACCTTCATGATTCCATTGATGTTACTTTTTTTTTTCATTCTTTTATGTTTGTGAGTTGT TTGATGTATTCCAATTCTAACTCTTAATATGTTGTTGATGTGCATGATGAACCTTGAAGAATGAGAGCCGTCCCCATTGC TACATGGCCTCACAACCTGAGATTAATGAGAAGATGAGAGCAATACTTGTTGATTGGCTGATAGATGTTCACACCAAGTT TGAGCTTTCACTTGAGACCCTTTACCTGACAATCAACATAGTTGATCGGTTCCTAGCTGTGAAGACTGTTCCAAGGAGGG AACTGCAATTGGTTGGCATCAGTTCTATGCTGATGGCCGCCAAGTATGAAGAAATCTGGCCCCCTGAGGTAAATTTTTGC AACCTTGATGTTCACTACAAATTGGACTATTGAGTACTGAGAAATGATGACTAACACTTGTTTTTGTAATAGGTGAATGA CTTTGTGTGCCTCTCAGACCTTGATGTTCACTACAAATTGGACTATTGAGTACTGAGAAATGATGACTAACACTTGTTTT TGTAATAGGTGAATGACTTTGTGTGCCTCTCAGACAGAGCTTATTCTCATGAGCAGATACTTGTGATGGAGAAAATCATT CTGGGGAGGTTGGAATGGACCTTGACTGTGCCTACACCCTTTGTTTTCCTAACTCGCTTCATCAAGGCTTCAGTTCCAGA TGAGGGAGTGACAAACATGGCTCACTTTCTTTCTGAGTTGGGAATGATGCACTATGACACCTTGATGTATTGTCCATCAA TGATTGCTGCCTCAGCAGTCTATGCAGCTAGGTGCACTCTGAACAAGAGTCCTGCTTGGAATGAAACACTGAAGCTGCAC ACTGATTACTCAGAAGAACAACTCATGTAAGTATAAATTGCCCTGCTATGATTGTTTAGTGTTTACAACTCATTGTTCAA TTGTTGATTAGCCCTGCTAAGATTTGTTTATTGTTGATTAATTATTGATATTTGTTGGGACTGAACAGGGATTGTGCTAG ATTGCTGGTGAGTTTCCATTGCACTGTTGGGAATGGAAAGCTGAAGGTTGTGTTTAGAAAGTACTCTGATCCTGAGAGAG GAGCTGTTGCAGTGCTTCCACCAGCTAAGAATCTTATGCCCCAAGAGGCTAGTAGCTAGAGTATGATGACAAGTTTGAAG ATAAAGAAAGGAAGCTGCTGCCAAATGCTGCAATAACCATTTGTTATTGTAATTTTTTCCTTTTTGATTTTTCAAGTCTT GTAGCAGATTAACAATATTTGATCTATATTTTTTTTTCCCTTCTCAATTCCCAATTGAAATCTTGTGTTCAAATTGATGC TAATGCTAAGCACAAATTTTACAGTGTTTTTTCCATGACACATTATTTTACAGTGTTTCTTCAAGAAAATCTCCTACTTG TCCAGACCCTTAGCAATTTCGCAATTCGTATTCTCATTTTTTTGGGGGCACACATCGGAAAATAATTAGTAGTCCTCTTT TTTTGGTACATTTAGTAGTCCTCTTTGACTCTTGAAGCATGATATTGAAAATACAGTACTTGTTTCGTATTTGGAACTTA ATG
CDS sequence (LotjaGi1g1v0659100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCAAGACCCGTCGTTCCTCAACAACCCAGAGGTGATGCAGTCGTTGGGGGAGGGAAGCAACAGCCGAAGAAGAA CGGTGCAGCAGCGGGGAGGAACCGTAGAGCACTTGGTGATATTGGAAATTTGGATCCTGTTAGAGGAATTGAGGTCAAGC CTAATCGCCCAATCACAAGGAGTTTCTGTGCTCAACTACTTGCCAATGCACAAGCTGCAGTAGCTGCTGAAAACAACAAG AAACAGGCTTGTCCTAATGTGGCTGGACCTCCTGCTCCTGTTGCTGCTCCTGGAGTTGCAGTGGCTAAAAGAGAGGCCCC AAAACCAGTTACTAAGAGGGTCACTGGAAAACCAAAGCCTGTTGTGGAAGTCATTGAAATAAGCCCAGATGAACAGATCA AGAAAGAGAAATCTGTGCAGAAGAAGAAGGAAGATTCCAAGAAGAAAACTCTCACTTCTGTGCTCACTGCTCGAAGCAAG GCTGCATGTGGTTTAACTAACAAACCGAAGGAGGAGATTGTTGACATTGATGCTAGTGATGTTGACAATGAACTTGCTGC TGTGGAGTACATTGAAGATATCTACAAGTTCTATAAGATGGTTGAGAATGAGAGCCGTCCCCATTGCTACATGGCCTCAC AACCTGAGATTAATGAGAAGATGAGAGCAATACTTGTTGATTGGCTGATAGATGTTCACACCAAGTTTGAGCTTTCACTT GAGACCCTTTACCTGACAATCAACATAGTTGATCGGTTCCTAGCTGTGAAGACTGTTCCAAGGAGGGAACTGCAATTGGT TGGCATCAGTTCTATGCTGATGGCCGCCAAGTATGAAGAAATCTGGCCCCCTGAGGTGAATGACTTTGTGTGCCTCTCAG ACAGAGCTTATTCTCATGAGCAGATACTTGTGATGGAGAAAATCATTCTGGGGAGGTTGGAATGGACCTTGACTGTGCCT ACACCCTTTGTTTTCCTAACTCGCTTCATCAAGGCTTCAGTTCCAGATGAGGGAGTGACAAACATGGCTCACTTTCTTTC TGAGTTGGGAATGATGCACTATGACACCTTGATGTATTGTCCATCAATGATTGCTGCCTCAGCAGTCTATGCAGCTAGGT GCACTCTGAACAAGAGTCCTGCTTGGAATGAAACACTGAAGCTGCACACTGATTACTCAGAAGAACAACTCATGGATTGT GCTAGATTGCTGGTGAGTTTCCATTGCACTGTTGGGAATGGAAAGCTGAAGGTTGTGTTTAGAAAGTACTCTGATCCTGA GAGAGGAGCTGTTGCAGTGCTTCCACCAGCTAAGAATCTTATGCCCCAAGAGGCTAGTAGCTAG
Protein sequence (LotjaGi1g1v0659100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASRPVVPQQPRGDAVVGGGKQQPKKNGAAAGRNRRALGDIGNLDPVRGIEVKPNRPITRSFCAQLLANAQAAVAAENNK KQACPNVAGPPAPVAAPGVAVAKREAPKPVTKRVTGKPKPVVEVIEISPDEQIKKEKSVQKKKEDSKKKTLTSVLTARSK AACGLTNKPKEEIVDIDASDVDNELAAVEYIEDIYKFYKMVENESRPHCYMASQPEINEKMRAILVDWLIDVHTKFELSL ETLYLTINIVDRFLAVKTVPRRELQLVGISSMLMAAKYEEIWPPEVNDFVCLSDRAYSHEQILVMEKIILGRLEWTLTVP TPFVFLTRFIKASVPDEGVTNMAHFLSELGMMHYDTLMYCPSMIAASAVYAARCTLNKSPAWNETLKLHTDYSEEQLMDC ARLLVSFHCTVGNGKLKVVFRKYSDPERGAVAVLPPAKNLMPQEASS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PIRSF | 1 | 447 | 447 | 4.4E-174 | – | |
| PANTHER | 21 | 443 | 423 | 2.2E-182 | ||
| PANTHER | 21 | 443 | 423 | 2.2E-182 | – | |
| SUPERFAMILY | 182 | 317 | 136 | 7.94E-47 | ||
| Pfam | 193 | 317 | 125 | 1.7E-42 | ||
| Gene3D | 195 | 431 | 237 | 1.4E-89 | – | |
| Gene3D | 207 | 318 | 112 | 1.4E-89 | – | |
| CDD | 221 | 310 | 90 | 8.79842E-24 | ||
| ProSitePatterns | 222 | 253 | 32 | - | ||
| SMART | 227 | 311 | 85 | 1.3E-25 | ||
| CDD | 318 | 405 | 88 | 9.64834E-19 | ||
| SUPERFAMILY | 319 | 438 | 120 | 3.4E-39 | ||
| SMART | 320 | 437 | 118 | 1.2E-37 | ||
| Pfam | 320 | 436 | 117 | 4.0E-35 | ||
| SMART | 324 | 406 | 83 | 3.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi1g1v0659100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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