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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0665600 |
Transcript ID | LotjaGi1g1v0665600.3 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | S-adenosylmethionine-dependent methyltransferase; TAIR: AT2G41380.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|Q55EX9|Y8948_DICDI Putative methyltransferase DDB_G0268948; TrEMBL-Plants: tr|I3SZS3|I3SZS3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0665600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:122772159..122773266) extracted from Lotus japonicus Gifu genome v1.2.
ATATATCTCAATCACATCATCATGTAATGATGTATGTACCTGGATATAGACTCAATGACCACTAGATAACTGAATTTGAA ACTAGAACTTTAGGTACAGCTAATTCAGCTCAATCTGAGTCAAGTGATGAATTGGAACATTGAATTTACATGTGTATGCT GTCTTCTATATTGGTATAAGGAGTTCTTCTTAATTTGTCAATTTTCAGGATTGCTTATTCTCTGACCAAAACTAATTGGT ATTTTCAGTTAGCTGAACTATACCAGAATGTCATAGCCACGGATGCTAGTGAGAAACAGCTTGAATTTGCAACAAAGCTC CCCAATGTGCGATACCAGCATACCCCTTCAACCATGTCCATTGCAGAGGTTGAACAAAAGGTGGCACCTCAAGGAACCAT AGACCTTGTGACCATTGCCCAAGGTCTCCACTGGTTTGACCTCCCAAACTTCTATGCACAAGTCAATTGGGTTCTCAAGA AACCACATGGAGTCATTGCAGCGTGGTCTTACAATTTGCCTAGACTTAGTGATGCAGTAGACTCTGTCCTTGATCAATTT TATGGCTCTGATACTAAACCTTATTGGGACCAAGCACGCAGATTGGTTGAAAACAATTACAGAACCATTGATTTTCCATT TGAGCCTGTGGATGGAGCTGATCACACAGGACCGTTTGAGTTTGTGACAGAGACTGTGATGGATTTCGATGATTTCTTAA CTTATATAAAATCATGGTCAGCATATCAGACAGCAAAGGAGAAGGGAGTGGAGCTTCTAGGCGAGGATGTGGTTGAAAAG TTCAAACTTGCTTGGGGTGAAGATGGCCAGAAGGTTGCCAAGTATCCAATTTATCTTAGAATTGGAAAAGTAAGTGATGC CTGAAAATATGTTCTTACTTGATAGTTAGCTCAAGAAACATTTTCTGTTTGTTGATTAAATAGTTTAGCTCTATTGATAC TATTTGAATCATTTATTGAGCTGATTGTTAAGGAAGAGGTGAAGTAGAAAGCTTAAATTCCAAGGGTAAAACAGTCCTCG TGTATCCAATTTTGTTTTATGCTTCCATGGCCAACCAAATTTCAAATTGCTAGAAATCCATTTTCTGC
CDS sequence (LotjaGi1g1v0665600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATTGCAGAGGTTGAACAAAAGGTGGCACCTCAAGGAACCATAGACCTTGTGACCATTGCCCAAGGTCTCCACTG GTTTGACCTCCCAAACTTCTATGCACAAGTCAATTGGGTTCTCAAGAAACCACATGGAGTCATTGCAGCGTGGTCTTACA ATTTGCCTAGACTTAGTGATGCAGTAGACTCTGTCCTTGATCAATTTTATGGCTCTGATACTAAACCTTATTGGGACCAA GCACGCAGATTGGTTGAAAACAATTACAGAACCATTGATTTTCCATTTGAGCCTGTGGATGGAGCTGATCACACAGGACC GTTTGAGTTTGTGACAGAGACTGTGATGGATTTCGATGATTTCTTAACTTATATAAAATCATGGTCAGCATATCAGACAG CAAAGGAGAAGGGAGTGGAGCTTCTAGGCGAGGATGTGGTTGAAAAGTTCAAACTTGCTTGGGGTGAAGATGGCCAGAAG GTTGCCAAGTATCCAATTTATCTTAGAATTGGAAAAGTAAGTGATGCCTGA
Protein sequence (LotjaGi1g1v0665600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIAEVEQKVAPQGTIDLVTIAQGLHWFDLPNFYAQVNWVLKKPHGVIAAWSYNLPRLSDAVDSVLDQFYGSDTKPYWDQ ARRLVENNYRTIDFPFEPVDGADHTGPFEFVTETVMDFDDFLTYIKSWSAYQTAKEKGVELLGEDVVEKFKLAWGEDGQK VAKYPIYLRIGKVSDA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 175 | 175 | 2.4E-88 | – | |
Gene3D | 3 | 169 | 167 | 8.4E-49 | – | |
SUPERFAMILY | 9 | 153 | 145 | 1.54E-5 | ||
Gene3D | 55 | 159 | 105 | 8.4E-49 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0665600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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