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LotjaGi1g1v0666700.1

Overview

Field Value
Gene ID LotjaGi1g1v0666700
Transcript ID LotjaGi1g1v0666700.1
Lotus japonicus genome version Gifu v1.2
Description Strictosidine synthase family protein; TAIR: AT2G41290.1 strictosidine synthase-like 2; Swiss-Prot: sp|Q9SLG8|SSL2_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 2; TrEMBL-Plants: tr|A0A151RUW8|A0A151RUW8_CAJCA Adipocyte plasma membrane-associated protein; Found in the gene: LotjaGi1g1v0666700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:122901267..122902070) extracted from Lotus japonicus Gifu genome v1.2.

TGATGCATTTATTTCCGATATACAATAATGTCTGTCACCTGAAAATGCAGGAACTACGTGTCTCTGATCCTAAGCGGAGA GAAAACAGGGAAGTTAATGAAATATGAACCACAAAGCCAACAAGTTAGTGTTCTTCTAAGCAATCTCACATTTGCAAATG GGGTAGCACTCAGCAAAGATGGTGACTACATTCTAATAGTAGAAACCACCAACTGCAGAGTACTTAAGTATTGGCTTGAA ACACCAAAAGCAGGAACATTAGAAGTCTTTGCTGATCTACCAGGTTTCCCAGACAACATAAAAAGAAGTCTAAGAGGGGG ATTTTGGGTGGGAATTTACTCAAGAAGGGAAAAACTTATACAATGGATTCTATCTTATCCATGGGTTGGGAAAGCTCTGC TATGGCTTCCTTTGGACATCACAAAAGCTTATTCTTATTTGGCTAAGGTGAAAGGGAGTACTGGATTGGCAATTAGGCTC AGTGAGCAGGGTGATGTTTTGGAAATTTTTGAAGATAGAAGTAGGAATAGAGGGAGGTCTATTAGTGAAGTGGAGGAAAG AGATGGAGTGTTGTGGGTGGGATCCATAAATGGGCCCTTTGCTGCTAAGTATAAAACTGTTGCAAGTGTTGTGGATCACG ATCCTCTTGGGTGAAAATTTTCTCATGTTTGCTCATGTTGAAATTTGTGTTTATCTCTCTCTTCATATATATTGAATATG TGTGAGACTAAAACGCATTAAATATTTATAAAAAGAGAAATAAACATAGTGTATATTATCACATGACATAAGATATCATA GTTC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0666700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAATATGAACCACAAAGCCAACAAGTTAGTGTTCTTCTAAGCAATCTCACATTTGCAAATGGGGTAGCACTCAGCAA AGATGGTGACTACATTCTAATAGTAGAAACCACCAACTGCAGAGTACTTAAGTATTGGCTTGAAACACCAAAAGCAGGAA CATTAGAAGTCTTTGCTGATCTACCAGGTTTCCCAGACAACATAAAAAGAAGTCTAAGAGGGGGATTTTGGGTGGGAATT TACTCAAGAAGGGAAAAACTTATACAATGGATTCTATCTTATCCATGGGTTGGGAAAGCTCTGCTATGGCTTCCTTTGGA CATCACAAAAGCTTATTCTTATTTGGCTAAGGTGAAAGGGAGTACTGGATTGGCAATTAGGCTCAGTGAGCAGGGTGATG TTTTGGAAATTTTTGAAGATAGAAGTAGGAATAGAGGGAGGTCTATTAGTGAAGTGGAGGAAAGAGATGGAGTGTTGTGG GTGGGATCCATAAATGGGCCCTTTGCTGCTAAGTATAAAACTGTTGCAAGTGTTGTGGATCACGATCCTCTTGGGTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0666700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKYEPQSQQVSVLLSNLTFANGVALSKDGDYILIVETTNCRVLKYWLETPKAGTLEVFADLPGFPDNIKRSLRGGFWVGI YSRREKLIQWILSYPWVGKALLWLPLDITKAYSYLAKVKGSTGLAIRLSEQGDVLEIFEDRSRNRGRSISEVEERDGVLW VGSINGPFAAKYKTVASVVDHDPLG
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10426:SF79
1 173 173 6.0E-68 –
PANTHER
PTHR10426
1 173 173 6.0E-68 –
Gene3D
G3DSA:2.120.10.30
1 181 181 4.2E-47
IPR011042
Pfam
PF03088
1 49 49 4.5E-15
IPR018119
SUPERFAMILY
SSF63829
2 167 166 2.83E-22 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0016844
Molecular function Strictosidine synthase activity Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0666700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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