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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0669800 |
| Transcript ID | LotjaGi1g1v0669800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Activating signal cointegrator 1 complex subunit 1; TAIR: AT5G04000.1 hypothetical protein; Swiss-Prot: sp|B2TL32|Y1718_CLOBB UPF0210 protein CLL_A1718; TrEMBL-Plants: tr|G7KSL9|G7KSL9_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0669800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:123340886..123344295) extracted from Lotus japonicus Gifu genome v1.2.
AAACAATAACAATTACCTACTTTTTCTATATTTTATTATTTTTACCACTTGATTTCTTTCCTTTTATTTCCAGACATACG TCCAAACAACTAGAAAAGAGTCGTAAGAGGAAAGAAAAAATGCAGACACGTGGCACGCAGAGCTCAACACACGCAACACA AGCCTCAATAAAACCCCAGAATATGTCGGTTCGGTTCTTCTCTTCTCCGATCTTCAATACTTCCCTTCATTAACAGTTTC AGGTATTGCTCTATTCTTCTTTCACAAAGAAATTAAATTAGGTTTTTCTTGATGATTTGCGTTTTTCTCTAAGTGTTGAT TTGGATTTTGGAATTTCGCAAATACTGGATTGAATAGTGACTGGGTATGCTGAATTCGTGTACTAGTTACTTATGATTGT TGAATTGTACCTTTGAGTGAGCAACTATAATGGGAAATATTTTACACCCAAATTCTGGTAGCAAATGAGTGTTACTTGAT ACCCTTGTGTTATTTATCCCTTTCAAAGATGCTATGCACAGATTATAGTACATGAAAACAACTAGTATAATTATATACAA TACAATAAGGGATATAAAGTACTAATTACTGGGGCATCTATTATTTCAACTAGAGGAATTCCACATTCCCCCTCCTAGTA GGGTTTTACTCTTTAATTTTGCATGTTAGAGTTGCAATTGCAGTTTAATCTTTCTCTTCTAAGTTCTAATTTGTGATAAA AGCAGAAAACCTCTGAATGTTATTTATCCAACAAAAAAGGGAGATCAGCTACTTACAACAAAGTAAAATACTCTGGGACA CATAGAATCAATTGCCAAATGTGAAAGAAACATAGATATCCAGAGACTTCAATAAGCAATCTCTTTTCCAAGGAAGCACG AACACTTCAAAATAATAGCTGTGTCGGACACATTTATTTTGGATACTTAATGGTCATTTTGGATACTTCTAGTTATATTT TGCAATTGTTTACTTTTATTTTTTTAACTTTTTTACAAATGTATAGATGGGAATATCACAATAATTAGATAAGTGCTTAC ACATTGGTTTTCTCTTTTGATTCATAATTTGTGCTTTTACATTAATTTATATGTATTGTTGCTGTCTATAAATGCTTAGA TTTTGCTCTATCCTCCTGTGTGTACTGTGTCATATTGTATCCTTGTCTCACTCTCATGTCATATGACTCATATCTATGCT TTCTATATCTGCACCCAAGCCAATGGCTGCCGATTTTACCTCAAAATTCTGCTCACCTACCTCGACCCCCCTACACCTTC GCTATTTTTTTCTGTCAGGAGGTTGACAGGGGCGCATTCGCACTGCCAGCTGTCTATTCTGTTATGCTCATGATCCACTA GTCAATTTGGGCCAACTAGTGAATATTCATTGCTTCCTCCCTCTCATCCCTACTCCGCCCATACTTTCTTAGCATGGACT TTGGTTTTAGTTTCAGTGCCTAACACTTGAGTGATTATTGGTTTCCATAGTCCTTCTCTATTTTGGAGTAATTATTCCAG ATAATCTTGTGTCATACACATTGGATAGGATCAAAATGCTACTGTTTTAATCGAAATCATTGTGTAGGTTAAGGATTTCA GAAGATCTTGTGGAATGTGGAGAATTCAGCATTACCAAGACAGCGAATGAACCATAACAGGAATCAACTGCAGGTCTATT AATGCAAGTTTAATCTTTCCTGGAGTGAAAATTGATAAAATGATGAGCGGTGAGTGCTATCTTTAATTGCTTTATTTTAT CTGAAGCTCAGTTTGAACACTTCTTCGTCAGGATTAAATGTTTGATATTACTCTGTTAATAGTGCCGTCCGGAATGTAAA TTCTGTCAATCAATTCACTTGGGTGAAGCCATAAACAAATGTGCTTTGTAGTAAAGTGCAAGGCCATCAAATTGCGGGTG GGGGTGGGGGGGGGGAGCACTGAGCACATCATTACTATTGAATTAATGGGAATGGAATTTATTTGTTTATTAGAAGGAAA GAATGGAATCAATAAGTGAAGCATGCCAAAGCAATGCCATGCTAGCATTTTTAAGACTTATTCATTCAAAGACTATATAG ACTTTTCGTGGAAATCTTTCAGACATGATCCAAACTTTTCTTCAGTATTTGGCCTGCTGAAGTCTTAATAGTATACGAGT TTCTTGACTTGTATTTTTCCATCTAAACAGTTTTATAGTTATAGAGCTGTGCAATAAGGCATGTTAGAACACCGTCATGG AAAGAGGCTAGGCTGAACTAGACTGTATAGTTAATAGGGATCCTCTTCTTCGTAATTCTGTATTGTAGACTTTTATTTTA CTTTGTTTTCTTTCTTTGATGTAATGGTCATGTTACAAGATGCCCTTGTTAAAGACTCTGTCTTCATGAGTTCAACAGAT AAAAATCAGAGCAAGCTTGTCCAGGATGTTGTAGCTGACACCACTCCTTCTGAGATGGATGACAAAGATGTTGCAGAGAC AAAGATAGTTGATAGGAAAGGTGGAGAAAATTGTCCAAAGGGTGCACCTCTTGAGGAAATTGGTGCATCAGGGGATGTTA ACATGGAAGTACCCATAACACCTGATGATGTTATTCGGGCCGGGGGATTTGGTGCGAGAGATGATATCGGTAGCTTTCTT CCTGTTGCAAGTGATTCTACTGACTTTGAAGCATCCATCCGAGATGCACGAGATTATGAGGAACCACAGGGTGAAGTTAG CAGGCCTGGCCTTGGCTGGACTGGTACTACCAAAGAGGAATGAGTTACTAATACATGCACTGGTATTCGTAGCTTTTGTT TTTTAATTGTGGGGATCATCCCTGTGTTTCTGGCTGATATTAACTGGTTCTGGTGCTTGTTAGATATTCAAATAGTCAAG TGATACTGAAAAATATCTTGTTAAGAATGCTAATCGAAGATTTTCTTGTAAAACTAGTTGGTTTGTTAGCTAGATTAGTA GATTTTGGTTTGTCCTTTTGAAGTGGCGTATTACATTATACACTACAAGTCACTTAGAACTTCTTTGTATTCACTCTCTC TGTTCAAAAGCTGAAATGTAACACATAGCTTGCCTACTCTAAACTGAAGAAGTTATAGTGTTTTTAGGAATAAGATGGGA TGTAACCTCAGCAGTGTGTAAATATTGGAGATTATATTAACTTTTACAGTATCTTGTTATATTTATAAGGTGGTAGAAAG ATCAACCGAAAATGTTATACACAAATTCAAGTTAGGTAGATGAAACCAAAAAGTGATGAATGAGGCGTTTAAGCGGATGT GCCAATGATTGAGAAGAGACAGATTAGATTAGTAAAAATTATATTTTATGGAAAATAGAAACTTGTTTATGATGGTTAGG TTAAATAACATGATATGATAGGTGTTCTGAATAAAAACAGTATATGAAAC
CDS sequence (LotjaGi1g1v0669800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGAGCGATAAAAATCAGAGCAAGCTTGTCCAGGATGTTGTAGCTGACACCACTCCTTCTGAGATGGATGACAAAGA TGTTGCAGAGACAAAGATAGTTGATAGGAAAGGTGGAGAAAATTGTCCAAAGGGTGCACCTCTTGAGGAAATTGGTGCAT CAGGGGATGTTAACATGGAAGTACCCATAACACCTGATGATGTTATTCGGGCCGGGGGATTTGGTGCGAGAGATGATATC GGTAGCTTTCTTCCTGTTGCAAGTGATTCTACTGACTTTGAAGCATCCATCCGAGATGCACGAGATTATGAGGAACCACA GGGTGAAGTTAGCAGGCCTGGCCTTGGCTGGACTGGTACTACCAAAGAGGAATGA
Protein sequence (LotjaGi1g1v0669800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMSDKNQSKLVQDVVADTTPSEMDDKDVAETKIVDRKGGENCPKGAPLEEIGASGDVNMEVPITPDDVIRAGGFGARDDI GSFLPVASDSTDFEASIRDARDYEEPQGEVSRPGLGWTGTTKEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 59 | 59 | - | – | |
| MobiDBLite | 1 | 15 | 15 | - | – | |
| PANTHER | 16 | 123 | 108 | 2.3E-48 | – | |
| MobiDBLite | 19 | 43 | 25 | - | – | |
| MobiDBLite | 100 | 124 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0669800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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