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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0676100 |
| Transcript ID | LotjaGi1g1v0676100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Plant/F3C22-140 protein, putative; TAIR: AT3G52740.1 hypothetical protein; Swiss-Prot: sp|Q9LXJ1|BIC1_ARATH Protein BIC1; TrEMBL-Plants: tr|I3SWU1|I3SWU1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0676100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124297698..124301282) extracted from Lotus japonicus Gifu genome v1.2.
CAACCTCATTGGTTGCAAGCCAAGAATCAAATAGACATGGAGATCAACATCAACCTCACAATCCTCCAAATCAAAAAATC AATCTGAGGAATACCATTGGCTTCTTCACTCACCCCCTCTCTCTTTTCCCACAAAGTAAGTCTTTTTCTTTTGGTTTCAT TTTGGCATTTTTCAGTGCTCAGTAAGTGGCAACTAGAACTAGGCCACACATATCAAAATCCCACCCCAAACAAGACACGT ACGTTTGTCACATACCATACAGAAACAACTCTTGTGGACTACGTGTAACCAAATTTCCCACCCATTGTTTCCCATTTCCT TTATTCATTGCCCACACAACAGAAAATCTGCTCCTCTCACACACATCAAGGAGGTACACACAGCACACAGAAAAACAAAT ATCACTTTGCTCTGTTTCTGCATGACAGAACAACACAACCACCCTTTCATCATGGCTCACCAATCCTCTTCTACTGAATC TGATAACCAGGTTCCTCCTTACCCATTTGAATTTGACTTGAAAAGTAGCCCCCAATCATCTAAAGATTCCATGTTGCAGC AAGAACAAGAAACCCCATTCAACCTGAAAGGTGTTACACAAAGCCCCTCTGCTTCAAAGACCCTTGTCTGCAACAAGGAG GAAACAGAGTTACAGGAGCTTCTAGCAGAGGATAGTGGACGTGAGAAGCTGAAGAGGCATAGAGTTGAAGTGGCTGGAAG GGTTTGGATTCCAGACATGTGGGGTCAGGAGGATCTGTTGAAGGATTGGATAGATTGTTCTGCATTTGATGCTCCTTTGG TTCCAAGCAAGATCACCATGGCACGTGAGGCTTTGGTTGGAGAGGGTAGAAGAGCCAATGCTGCTGGTCTAAGGATAGAG AACAGGTGTTAGAATTTTTTTCTTTTTTTTTTGTTTTTGTTTCTGTAATTCAGTTTAACCACAACCATCTATTGATGATG GAGGGTTTTATTAATCCTGATCTTCATAGATATTATATACATATATATAATCCTTTCGTTTCTTCTTTTCGAATTTGATT TTGATGATTGTTGATGGTGTGATGCATTTGAAAACTTAAAACCATTTTGTTTGGGAACTAGATATATGCAAATTACGTTA TTTTATATATGTGTATTCATTCATTGACTACTTTCAGCTCATGAAACTTTCAGCCTCTTGAAAAAACAGTTCTCATATGT TGTTTCAAGCAAAACAGAATAATATAGTCCAAATAAACTTTGACGATAGGCAAGAGGATAGCAAATTAGTCTCTAATGGT ACATGTATTTTTATTCTTGAATTTTATGTAATTATCTATTCTGACCGGCAGCATGGTACATTTCAAAAAACAACAATATA AAAATAGAAAACCTAATCTGAGTGCATTTGTTTAACAAGATTCGCCAGAATTCCAACTAAAAGTTGATCAAATTAAATTA AAAGTCAAGTGCCCAGAAGTCATTCCCATTTTAACCATAATCTATCGTAACTTAAAAATGCTCAATATTATCAATTATGA TGCTCATTTTTTATATTTTAGTCCTCAATGTGCAGTGAAGTATATATTGCCATTTACAAAAGGCTTACCAGGGTATACCA ATGATGTGTACTGGTAGCAATATATGGAAAAAGGGCTATAAGCCTTTGCCATTGCATGCTTTATTTGAGGAATACTTGCT CAAACCAACCATCTCCTGGCCTTGCAAACCCATCAGAAAATTATGGGCACAGGATTTCTCAATTCAATCCCCTGTTGCTT TAGTTAGGAAACCCTGTTCTGACAGTAGGCTGAAACACACTCATTAACGAGTATCCTTCCTTTTCATTGCATTGATCTAT CAACATTTATAGTACGTATCAACTTCGTTTTTATTAGAATGAATTCTAAAACCCAAAAGCACTCACAAGCTTTTCTCTTT GAATTAATTCTAACTTCAGAATTAATTGTATAAGGATTTCCAAAATGCATAGGGCTCATTGAAATAAGCACACTTACTAT ACTAATTCACTATAGGGTAAGTGATTATTTAGCAATTCCGAGCAAAAATGCAAGTTAAGTTTACAGTAACTATAATTTAC AGCCTTACTCAAAAAAAAATATCCAATATCTGCTTTAAATTATTAATACATATATTAAAGAGAAAACAAAAGGCACTATG AGGATGCTGCACATCTATTTGTTTCCACTCTTTAGCTCTACCAGTATAAATTTCTACTACTGATACAGCAAATAAGCAAA ATTAGCATCATCATTGGGATACCAGCTCCCACACCTTGATTGTCCCATCATCGCTGGCAGAGGCTAGTAGTGGTTTCTCC TATTTAGAATGCAACAGTAGGCCAAAACTGTTGATTAATACAGAGAAAGCAAAAAACAATTGCAGAGAAAGACAAAGCAA AAAGAGTACTGGCTTCTCTAAATGTACAAAGTCCTTATAAGCTATTAAACAGTATGTAATTCGCAGATGTCTAACATAAT CGTAACTACTAATCTTATGTTTACTATACCATTGTGATAACTTATTCTGTTCTTTGAGGAGCAAACTCTTTGTAAAAGTA AGGTTAACACTTCATTAGTAATAGAAAGCGTACTAATTACAACTAGTTTAATACATCAAGTACAAGTTATTAAAGTAAAA TTTTAAGAGGCCACTCTTCAGAATCAGACACAATCAACTAAGATTATCTGATATTAGCAGTGAAATCCACCATCCCACCC ATTTCATCTTTGCGCAAAGAGATATTCACTTCATCATCATATGCTTAATGAAAGTAGTGTCTGAGAATCTTACCCCAGGG CTCCACTGCACAGAATTTATATCCATGTCATGGGCCTTCTCCTTTTTCAGCAGCAACGTGTACAGAGGACCTCCGACCTA TGTTACAAGCACATAGTAAACTTTGGTCAAACTAAACTAGGGTTATTGATAAAGTGAGATGCACATCTATAGTCTACAAA GATACAAACTCAATTACTTCAAGCAGACTTTTATACATTTTCGTCACTATTTTCCTACACAATTGCACATTCTTATCTAT GTTTGAATTTTTCAGGGACTTGGATTTCAATGTACATATGGATTTATCCCTTAATAACAACTGCACCAATGTTGAGGTTC AAAACATCCACATGTTTTCAGACGCCAAGAAGAGCACCTAAGTAAAAAAGATCCAATGCAAATGAAATTGAGAATGGGGA TTATTATGTTAAGAAAAACATTGGAAACCAGCTAATGCAGCTCACCAGTTACCTTCAAGGCAACTATGCAAGAACACCAT GCTAATCTCTTCAAGACAAAACATAGTTCAAATAAAAAATCTTGATGCAGATAAATGTAGTTGCAAATACAGTTAACACA GTACAACTGTTTGGCTGAATCATTCTCTGCACTTAAGTTGTAAATAAACATTTATCATTGATTTGTCAAGTCCTCGCCTC CTCGGCTACTCTTGTCCTTGTAATTGCAAGTACAAAGAAATTCCAAGTTTATTCATATGCACAAATAGTCAATAGAACCA TGCAGTGTCCATGATTAAAGTGATTGATTTTGCACCAGGGCAACAATACTTGTAATGGACATACG
CDS sequence (LotjaGi1g1v0676100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGAACAACACAACCACCCTTTCATCATGGCTCACCAATCCTCTTCTACTGAATCTGATAACCAGGTTCCTCCTTA CCCATTTGAATTTGACTTGAAAAGTAGCCCCCAATCATCTAAAGATTCCATGTTGCAGCAAGAACAAGAAACCCCATTCA ACCTGAAAGGTGTTACACAAAGCCCCTCTGCTTCAAAGACCCTTGTCTGCAACAAGGAGGAAACAGAGTTACAGGAGCTT CTAGCAGAGGATAGTGGACGTGAGAAGCTGAAGAGGCATAGAGTTGAAGTGGCTGGAAGGGTTTGGATTCCAGACATGTG GGGTCAGGAGGATCTGTTGAAGGATTGGATAGATTGTTCTGCATTTGATGCTCCTTTGGTTCCAAGCAAGATCACCATGG CACGTGAGGCTTTGGTTGGAGAGGGTAGAAGAGCCAATGCTGCTGGTCTAAGGATAGAGAACAGGGACTTGGATTTCAAT GTACATATGGATTTATCCCTTAATAACAACTGCACCAATGTTGAGGTTCAAAACATCCACATGTTTTCAGACGCCAAGAA GAGCACCTAA
Protein sequence (LotjaGi1g1v0676100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTEQHNHPFIMAHQSSSTESDNQVPPYPFEFDLKSSPQSSKDSMLQQEQETPFNLKGVTQSPSASKTLVCNKEETELQEL LAEDSGREKLKRHRVEVAGRVWIPDMWGQEDLLKDWIDCSAFDAPLVPSKITMAREALVGEGRRANAAGLRIENRDLDFN VHMDLSLNNNCTNVEVQNIHMFSDAKKST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 24 | 24 | - | – | |
| MobiDBLite | 1 | 62 | 62 | - | – | |
| PANTHER | 12 | 155 | 144 | 3.7E-46 | – | |
| PANTHER | 12 | 155 | 144 | 3.7E-46 | ||
| MobiDBLite | 33 | 62 | 30 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Blue light signaling pathway | The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. |
Expression pattern of LotjaGi1g1v0676100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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