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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0679600 |
| Transcript ID | LotjaGi1g1v0679600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF868 family protein; TAIR: AT2G27770.1 DUF868 family protein (DUF868); TrEMBL-Plants: tr|A0A0B2P3X1|A0A0B2P3X1_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0679600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124674314..124677749) extracted from Lotus japonicus Gifu genome v1.2.
GTAGAAATGGTCAAATTATGGGGGTTAATTATGATTTAATTACCTTAAGTGAAGGCAAGAGAAGAGTATAAGGCTATAAG CAGTTGAAGTCACATCCATCTCTTGAACTTTCATCCACAAGTAACTTCATTTTTTTAATAAAAAGTTTAGAGTAATCTCA TTGAATACACAGAAACAAGTATCATGGGTTTCGTTTTCATTCATCATAATTTGTCTTTACAATGTTTCTTCTCTCCTCCA CAGGTACGCCACAGAACAACAGAATAGACACTTCCACATGGATTAAACTCCCTGAAAGAGCAAGAACCCTCACCTTTTGT AACCTTCAATCCATTGTTCCCTTTTCACGCTGTCAGGTAATTCTTTCTTCCACCATATGCAAACCAAAACCAAAACTGAG CATTGATATATAAATCAATCCTCTGTTTTTCCTTCTTGGTACCACAGAAAAAACTGTCTTGATCCTTTTCATGTCGGTTG ATTTCTGAAAAACCCTTTTAACATGAGAAGCATAGCATCTTGTTACAGTGAACATGCCATTAAAGTTTCAGATTCTTATT GTTCTTCAAGGCCTTCAAACCAGGCTTATCTCTGTCCCAAACTGAACAACCCCTGTTCCATGAACCAAGACTCTGTTTCT TGCATCTACAAAGTGAACATGATCTCATCACAGAAACAATTCCTAATCACAATAACTTGGACCAAGAAACTCATTGGCCA AGGATTCACCATAAACATCACCACCAACATTGAATTTCCACCCTCTAAATTCAATACAAACCCAACTCCCCCTCTGCAAT TGAGAAAAAACAGAGGCGATGAAAGTTTCAAGGTTCGAAACTTTGATGTCAGAATTTTGTGGGATCTCTCTGCAGCCAAG TATAATGAAGGGCCAGAGCCGAAGGGTGAGTTCTATGTCGTTGTTTTGGTGGATTCTGAACTGGGTCTTCGCCTCGGTGA CAAGGATGATGAAATTGATGAAACACTGGACCTGAGTATCATGAAGGGGAATTTTTCAATGGTTTCTAGGAGCGAGCGAT TCTCTGGGACTACGGTTTATGCAACGAGGGCGAAGTTTTCTGAGTCAGGGGATTTTCATGACATATTGATAAGGTGTGTT GCAGAGGAAGAAGGGTTGAAGATGAATCATGTGTTGTCTGTGTGTTTGGATAAGAAGACAGTGTTCCAGGTGAAGCGTTT GAGGTGGAACTTTCGTGGGAATCAAACGATTTTTGTTGATGGTTTGGTGGTGGATATGATGTGGGATGTTCATGATTGGC TTTTCAATCCAAACTCTGATTCCTCTGCTGTGTTCTTGTTCAGGACAAGGAGTGGATTGGATAGTAGGCTCTGGTTTGAG GAGAAGAATTTGCAGACATGCAAGGAGCATGAAAGAATTGGGTTCTCTTTGTTGATATGTGCTTGTAAGAACCCTGATTG ATTCAATCTTTTGATTTCTCTTTTTGTTTCTTAGATTATATTTTTTGTTTGTCTTGTTGTTCATCTGGTTTTTCTAAGAT TTGGAAAGCTGACAGCAGCCACTGAGATATGGTTTTTTGTCCTCTCTTTGGATCATGCCTGTTCTTATTGGAAGAAAATA TCAAAGTTTTAAAGATAATATTGATTATTTGTATTTGACTGTTAAAAAATTTTTAAAGAAGAAAAAGAATACCTGAATAT ATGGAATGGTTTTGTAATTTTTTGTTAATTGGTGGGACAATGGGACATGGAGTGGGGATGCTACTTGAGGTAGGGAAAGT GGAGTTTTAGGGTGTGCTTGTATTTTTAGATAGTTTAAAATTGAATGTGTTTTTATCTATCCATATCTCTTGTGTCATTT GAGTGAATGTATTTTTGCTAACTTGAACTTAAATACAAAATTTGAAATTATAATATGCACTTCAATCTCATCTCAATGAC TCTCTGTTTATCATTAAGTCTGGTTTTGGCCTAGGACTCCTTGTTCCTTAATTAGTTGAATATGATTCTTTGTTGTATAG ATTGGTGAGAAATATTATACTTCACTGACAAATCACACATTTGGAATTCAGTTCTTTTATTGGTCCATGAATTTAGAACT TATTTAGAACTTATGTAAAAGCAAGATTGTACCTGACTAATGGCTATTGCCTAGTTTAAATTAAAACATGCCAATGTGAA ACGTCAATTCCCATAATTATTTTGATTTATACGTTTTGTATCAAATAGTAAAGTGGAAATACAATTATGTTAGGATTCAT TTAATTGATCTTATGATCTTATCTACAGGATATACATGTCTTTGTGAAAGCTTAAGTGCGTTTAGTTTACAAAACGGTAT TTGAATGAATGTGAGTTTTTAAAACAGAGTTTGAGCTAAATTGTTTATAATAATTATATGGTATAAAAAGTTTCGAATTT ATTTTCACTAGCCGTTCATATTAGCTTATGAACAACCACTGAAATCATAGTCTATTTTGATTTTTTTTTGTTACAAATTT TGAATTTATTTCAATAGATGTATCAAATTAATTTATAAATAAATGCTTAATTACGTTGTTACGCAAACACACCTCATGGT CTTACTTTAGTGCTTACTTAGCTTTAATAAAATGGTGAACCAAACCATAAAAAAATGGTACTTAATACTAACCAGTAACT ACCATGAGACATGATCAATAACACAAGGTGTCAAATTTTTTAATGACACGAAATCCTAACCATTAATTATATTTTAATGC TATGATTATGATTATTTCAATGAATAGTCAAATAACATTTATGTACTTTTCTTAATAAGTTTATGATTTTCTCTCTACAA AGGCAAAGTTTTCATCAGGTGATGGATGTCATGATATTCGTTTCGAAGGATGAAAGGAGCTACTAGACAAGGGCTCTCTT GGTAAAAACGTGAGGGGGTGGTCTTTTTCGTGTCGAAACTTGAGGGTGGATGTCGTTTACTCCCAAAGTGCTACTTCGAG GACAAGGTTTTTAAAAATCTTTGTGCACCATGGAAGGATATCATTGTGGTCAAACTTCTTGGGAATAACCAAGGATTGTT GATAATGACGATAGATTTCGCTCACTTTGGAACCCAAAGGTGATATGGATGTCATAGATGTTGGTCATGGTTTCTTTATG ATGAACTTTAATATGGAGGAACTAGGAAGACATGTTGAAAATTGTTGAGGGTGTTGTGTGACTTATTTTTCATTGACAAT CATTAAGGTGGATTGTGTAATGTCGACCGTAGAAAACCAACCTTAACCAAAAAAATTACCATCTACACGTGTGGTTCAAC CTGGCTTGACTGTATATTGCCCTAAAAACTCGATTTTCTTGGTTTCGGATCGGTTTCAGGTTTTTGGGTATCCCTAGCTA GCACCCTGCATACATACTTTCCAACCTTCTATTAAAGATATTAAGAATATTCTATTTTTTGTTTTCTTGAACCATT
CDS sequence (LotjaGi1g1v0679600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAAGCATAGCATCTTGTTACAGTGAACATGCCATTAAAGTTTCAGATTCTTATTGTTCTTCAAGGCCTTCAAACCA GGCTTATCTCTGTCCCAAACTGAACAACCCCTGTTCCATGAACCAAGACTCTGTTTCTTGCATCTACAAAGTGAACATGA TCTCATCACAGAAACAATTCCTAATCACAATAACTTGGACCAAGAAACTCATTGGCCAAGGATTCACCATAAACATCACC ACCAACATTGAATTTCCACCCTCTAAATTCAATACAAACCCAACTCCCCCTCTGCAATTGAGAAAAAACAGAGGCGATGA AAGTTTCAAGGTTCGAAACTTTGATGTCAGAATTTTGTGGGATCTCTCTGCAGCCAAGTATAATGAAGGGCCAGAGCCGA AGGGTGAGTTCTATGTCGTTGTTTTGGTGGATTCTGAACTGGGTCTTCGCCTCGGTGACAAGGATGATGAAATTGATGAA ACACTGGACCTGAGTATCATGAAGGGGAATTTTTCAATGGTTTCTAGGAGCGAGCGATTCTCTGGGACTACGGTTTATGC AACGAGGGCGAAGTTTTCTGAGTCAGGGGATTTTCATGACATATTGATAAGGTGTGTTGCAGAGGAAGAAGGGTTGAAGA TGAATCATGTGTTGTCTGTGTGTTTGGATAAGAAGACAGTGTTCCAGGTGAAGCGTTTGAGGTGGAACTTTCGTGGGAAT CAAACGATTTTTGTTGATGGTTTGGTGGTGGATATGATGTGGGATGTTCATGATTGGCTTTTCAATCCAAACTCTGATTC CTCTGCTGTGTTCTTGTTCAGGACAAGGAGTGGATTGGATAGTAGGCTCTGGTTTGAGGAGAAGAATTTGCAGACATGCA AGGAGCATGAAAGAATTGGGTTCTCTTTGTTGATATGTGCTTGCAAAGTTTTCATCAGGTGA
Protein sequence (LotjaGi1g1v0679600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSIASCYSEHAIKVSDSYCSSRPSNQAYLCPKLNNPCSMNQDSVSCIYKVNMISSQKQFLITITWTKKLIGQGFTINIT TNIEFPPSKFNTNPTPPLQLRKNRGDESFKVRNFDVRILWDLSAAKYNEGPEPKGEFYVVVLVDSELGLRLGDKDDEIDE TLDLSIMKGNFSMVSRSERFSGTTVYATRAKFSESGDFHDILIRCVAEEEGLKMNHVLSVCLDKKTVFQVKRLRWNFRGN QTIFVDGLVVDMMWDVHDWLFNPNSDSSAVFLFRTRSGLDSRLWFEEKNLQTCKEHERIGFSLLICACKVFIR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 310 | 310 | 1.2E-125 | – | |
| PANTHER | 1 | 310 | 310 | 1.2E-125 | ||
| Pfam | 41 | 309 | 269 | 2.1E-79 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0679600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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