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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0681500 |
| Transcript ID | LotjaGi1g1v0681500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein PP2-A13; TAIR: AT3G53000.1 phloem protein 2-A15; Swiss-Prot: sp|Q9LF92|P2A15_ARATH F-box protein PP2-A15; TrEMBL-Plants: tr|A0A072U2Z8|A0A072U2Z8_MEDTR F-box protein PP2-A13; Found in the gene: LotjaGi1g1v0681500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:124878057..124881348) extracted from Lotus japonicus Gifu genome v1.2.
TCGCTGTCGAACCTTGGAACCAAAGGTTCGACCATCGGTCCCGGCCTCGGGGACATCCCGGAGAATTGCGTCGCTCGCGT TTTTCTTCACCTCACTCCGCCCGAGATTTGCAACTTGGCCCGCCTCAACCGCGCCTTCCGCGGCGCTGCCTCCGCCGATT CGGTTTGGGAAACCAAGCTTCCCAGCAACTACAAGGATCTGCTCCACGCGCTGCCGCCTGAACGGTTCCAGAATCTCTCT AAGAAGGACATTTTCGCCCTCCTCTCTCGTCCGCAACCCTTCGATGATGGTAACAAGGTAGGGTTTTCAGTTTTTTCCCT ATTCTCTGCTAGAGATGTTGGTTGATGGTGGAAATTTTGCAGGAAGTGTGGTTGGATAGGGTTACGGGAAGGGTTTGCAT GTCCATTTCGGCAAAAGCCTTGTCAATTACTGGAATTGATGACCGGAGATACTGGACTTGGGTTCCTACTGAAGAATCTA GGTTACTATTTTCCTTAATCTTATCCTTTTACCCTGAATTTACTTTAGATGATTGCGTTTCGATCTTTAGTTTGTTGATT TGATGTAAGAACTTGAACATGCTTTTGATGGTGTTTAAAATTGAAGTTGAAACTTGAAACCCTAATGTAATTCTTGTTCA AGAACTACCTGACATCAGTGTCTGTGGTATGAAATTTGGTGGTGTCGACGTATTAACTTGGAATTACTGAGTTGGAATTT GAATATGTGATTCTTGCTTGTGTTGGCTTACTGAATTTCCAGTTCACTTCACATGGGGAAGTTGCTTTTTATAGACTCTA GAGCCTCCATGAGAATTGCTTGTGCGCATACTGTATTATTTGGATAAAACCTTGTCTCATATGTATGAACATCCTTCGAC TGCATTTATGTTGGAGTGATATTATTATACTTACTATATTTGTTCTGTTTGAGCTTTCCTGGCTGAAATCATGAAAAGCT TTTGTGTATATTAAGTACTCACTGCTATTTATGCTGTACTGTAACTTCCAAACTACCTATTCGTTAAATATGTCTTAAAT TCTAAAACTAGAATCCAACTATAAGTTTCCTGTTAGTCTAACTTCAGGTTTTCAATTTTGGGCACATGATTTGTCTGTCA ACAGTTTCACTTTTGTCTTGTTGGCTAGTTTGGTTCGTTTTGGTTTCTTTATGCTTGTCCTTTTAAGAAAGAGAAACTGT AAAGATCTCCTTCCTAAGTTTGTGTGTCCTGGTTGACCAATTTCTAGTTGATATATGATTATTCAGTTTAAGAAGTAGGA GAGTAATTCTATGGTGTCCGATGCATTAGGATCAAATATAATATTATTTACTGTGTATGGATTATGACTTTGTTATCATT TATTGTTCTTAGCTTCCCTTTTTCTTTTTCTTGGGCTGTTAAATATCTCCTTTAAAAGTTGCAAACTTTATTTGTAATGG GAGTGTTAACTTGTTGGGTGCTTCGTGGTTCGGCTATGAATTTAAATATGTACAACATGATTTAAAGAATTTCATGGAAC TTTCAACTGGATCACTCTAAGAGTACTCCCCCTCCCAAAGGAATAAAATAAAGAAAAGAAAGCTAACTACTTGCAGGGGC CCAACCAAATGCCCTAGTGAGCTCAGAATAGTTCCTTGGTTTAGACTTTTATTTGGCCCAAATCTAATGTAAAGGTCATT GTTTAATAGACTACTTGGCAGTTCTGTTACTATATTTTATTCCGCAGGCAAAGACTTCATCAACTAAATTCTAAGATTGT CCCTTGGAAAAGCAAGCTATCATGGTCCAACATTTATGATTTTTCTGGGGGCCTTTGCCTGTGAAAACTTTGATATTTGC ACATTAAACTCTCTTTGTACGTGTACTTCCTTAGTCTGCATAAGAGTCATGAATTTGCTGTTTCATCATTGGATAAACTA CACTTCTTGTCTCCTTCCCCTGAGTAATGCTTAAATCGTACTATGTTCACCTCTTATTTTAAAAATCACACTTCTTTCCC ACAAGAGATGAAATTTGCTACCTCTTAGAAGGGGTGGAGCAAGTATGAACACCTTATTGTCAATCTTAAGACTTTCCGGA GGGGGTACTTTTTCTCCCTCTGTAACTGTTAATGTTACCAGAAATAATTTTGAACACCTTATTGTCAATCTTAAGACTTT AGAAGTTAGATGAAGTTCAACACCCCTACTATAATGGTGAAAGTGAAACCACACCCGAAATCTTCAATTCATCTCCTAAG GTCTCAAAGTCCATCATGTTAAGGGTCTCAAAAGTAGTTACAAATGATGCTAGTTGCTAAGAATGGCAAAGAGAGAAAAC TATCATAAGAGACTCGTTCACATTAAAGTATAGACTGAAATGTAGCACATATTATTCTTTCAGAATGGGTGGGTGTGTAA TTTCTTGAAATAGAGGCAAGGGGGAGGAGAGTATAAGTTAAGCATCGTTTAGTAGGTAGTATACCCTAAATTATTTGTAA AGTGGAATGATGTTTCAACTTTCAAGTATATATGCAATTTGGTTCTGTTTAGATGGGTTGATCTCATTTTGGTTCTTGAG AAATACTCAACCTGATTCAACCTACAACTGTTCTTTCTATGAATAAAACATTAATAGGTGGTTTTTGTACTTAGTTTATG GACAGTGGGACGGCTGTAGTTATCAATTGCTTTTCATACTCCGATTAGTTAAATCATCCCGACTTTCATCTTATGTGTTA TTTGTGGTTTCTGTAGCATTCTTAAGCTTGACACTGAAGCTGCTTTGTTCAATCTGTTGGCATTATGTTCTGAGCATCGC TTTATATCTCCATTACTCATCTATTTCAGGTTCAACTGTGTGGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGG TGAGATCAACTTTCCACTCCCTGCTGATATTTATACTCTCTCCTTTAGGCTTCATCTTGGACGGTTTTCCAAGAGGCTTG GTCGGCGTGTATGCCATTATGAACAGACCCATGGTTGGGAGATAAAACCGGTTAGGTTTGAGTTGTCGACTTCGGATGGT CAGCGAGCATCATGCGAATGCTGCTTGGATGATACTGAGCATGATGAGATATATGGCTGTCATAAGCGTGGATGTTGGGT AGATTACAAGGTGGGTGAGTTTCTCGTCACTGAATCAGAACCTACAACTAAAGTTAGATTCTCCATGAAACAAATCGATT GTACACACTCTAAAGGTGGGCTTTGTGTAGATTCTGTATTTATTATACCTAGTTGTTTGAGAGATCGTAAGAAAAGCGGC TTTTTGAAGTAA
CDS sequence (LotjaGi1g1v0681500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCCATTTCGGCAAAAGCCTTGTCAATTACTGGAATTGATGACCGGAGATACTGGACTTGGGTTCCTACTGAAGAATC TAGGTTCAACTGTGTGGCATATTTGCAGCAAATATGGTGGTTTGAAGTGGATGGTGAGATCAACTTTCCACTCCCTGCTG ATATTTATACTCTCTCCTTTAGGCTTCATCTTGGACGGTTTTCCAAGAGGCTTGGTCGGCGTGTATGCCATTATGAACAG ACCCATGGTTGGGAGATAAAACCGGTTAGGTTTGAGTTGTCGACTTCGGATGGTCAGCGAGCATCATGCGAATGCTGCTT GGATGATACTGAGCATGATGAGATATATGGCTGTCATAAGCGTGGATGTTGGGTAGATTACAAGGTGGGTGAGTTTCTCG TCACTGAATCAGAACCTACAACTAAAGTTAGATTCTCCATGAAACAAATCGATTGTACACACTCTAAAGGTGGGCTTTGT GTAGATTCTGTATTTATTATACCTAGTTGTTTGAGAGATCGTAAGAAAAGCGGCTTTTTGAAGTAA
Protein sequence (LotjaGi1g1v0681500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSISAKALSITGIDDRRYWTWVPTEESRFNCVAYLQQIWWFEVDGEINFPLPADIYTLSFRLHLGRFSKRLGRRVCHYEQ THGWEIKPVRFELSTSDGQRASCECCLDDTEHDEIYGCHKRGCWVDYKVGEFLVTESEPTTKVRFSMKQIDCTHSKGGLC VDSVFIIPSCLRDRKKSGFLK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 179 | 179 | 2.3E-94 | – | |
| PANTHER | 1 | 179 | 179 | 2.3E-94 | – | |
| Pfam | 2 | 168 | 167 | 2.0E-39 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0681500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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