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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0683500 |
| Transcript ID | LotjaGi1g1v0683500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PLATZ transcription factor family protein; TAIR: AT1G32700.1 PLATZ transcription factor family protein; Swiss-Prot: sp|P0CB19|Y3081_ARATH Uncharacterized protein At3g50808; TrEMBL-Plants: tr|I1NAF2|I1NAF2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0683500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:125057241..125060497) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCACTCTCCTTCATAGTATATAGTCTCTCATTAGCGTTGTTGTGTCGTTGAATTCTAAGTTGAAGGCCGTTTACTCT CCTCTCTCTGCAGCAGCAACTTCCTCCAAAATCCGCCATTACCACCACCACCACCTCCGCCACCGCATTCTCCACTCTCG CCACCGCATTGTCCACCCCCAAATCCAATGGTATATTATATATTATATTTATTAATTAATTAATTTCATGAATTTTTTTT CATAGAATTACAATGTGGAATTTGAACAGGACTCACTGAGGTTGCTGGTGCCTCCATGGCTTGAACCTCTCCTCCACACA CAGTTCTTCACCGTGTGCCGGACTCACGCCGATGCAGCCAGAAGTGAATGCAACATGTTTTGCCTCGATTGCAATGGTGC TTGTGGTGCCTTTTGCTTCTATTGCCGTTCTTCAAAGCACAAAGATCATCAAGTCATTCAGGTCAGTCAGTAGACTAGGC TAATTAATTTTTTTTTTGAATTTTTGGGGCTGATTTTGATAATGTAGTGGTTGAATTTCACAATGTTTGAGATTTGAGAT TGGGATATTGAAGAATAATAATTCTATGTTGAATTTGGGTTTTCTTTGTTTAAATTGGTTAGATAAGAAGATCTTCATAT CATGATGTGGTGAGGGTAACAGAGATTCAGAATGTGTTGGATATAACTGGAGTTCAGACTTATGTGATCAACAGTGCTAG AGTTTTGTTCCTGAATGAGAGGCCTCAACCAAAATCTGGAAAAGGGGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCC TCTTGGACCCGTTTCGGTTCTGTTCTTTAGGGTGTAAGGTGAGATGTTAATTAAATTGTTAATTAGTTTCATTAGTATTG GCATTGTTTGTTTTTTCTTTTGATCTATCATCTCCCACAATGTTGTTGTTGTTCTTGTTGTTGTTTATATCATTATCAAC ATGCACATCATCCACAACTCAATAATCCTCATCATATGGGTATAACACCCACCACCCATACATCATCACCAACATTTGAA AGCCCATCACCATCATTCACCATCATAATTATATTCCCACCGCTTTTAATTATTCATCATGTCTTCATAATTAGCTAGTA TAATACATAGTTACATACCCATTGACATTTCAATTTAATTCTAAGCATGAGTTTTGTAGATGATGGTAGTGATTAATTAT TGATTAGGAGTACTAATGAGAACATGGCATGAGATATCATTTAATTATTGGTTTAGTTTGATGGCATTATTGTCAATACT TTAATTCGGAATATTGAATGATTGTAGCTTGAAGGAATCAAGAAAAATGGGGATGCAAGCTTTGTTTTGGGGGTAAAGAA TGAAGAGTTGATGATGACAATGGACACTAGAACCACCTCCTCTAGATCACAGCAAGAAGAATTGCGTGAAGGCTCAACTC AAGACATGTATCCGGCCACGCCTTCTCCACCTCCTTCAAGTGCAAGAAGAAGAAAAGGCATTCCCCATAGGGCTCCTTTT GGTTCCTAATGAATAATCCCAATTGGCCACTCCTTCAAACTTGGTACATATACAATATTCATCCTCAAAAGCATTTTTTT TATTCCTTGGAATACAAACCTCTTTTGGGGGTAAAGTGCAAACCTTGTTATTAAAATTTATTTATTTTCAATAAAAAAGA AAAAAGAATAGGAGCCTTTGGAGGGGGGTTTGTACTTTGTTTAAGGTCCATGTTGTGGAAAAGAAAGGGAAAGGGTTATA AGAAAAAGCTCCCTCTTTTCCGGTTTGGGTTCAAATAAAAACAAAACCCCTCTTGTGAACAAACCAATAATGCATAATTG TTTAATATTTAATTTAATAGTAGCTGGTGTATATGTCATTAAGAAAACAATAAAGCAAGGCTTTGTGGAGTCCGTTTTAT AGTTTTCAATGGCCCACCATGCACATGGGCCGTTTACATAAAGATAATCCCACCTTTTTATATCATTTATTTAATATTAT TTACTTTGATAATACGTGTGCATGTAAAGTAATGGTGATTAACAAACTAAGTTACGTAGTGATTCAGCACATCGCCTTTT AAGTAGGATTAGGGGTCTAAATCCTAACTTTTATAAATGAAAAAATATTTTCTCAATCAAAATTTCTGCTTAATGCACTA ACTGTAGAGCAATGAATTAGTTTTTTGACCGTCGAATGTGAAGATACCTTTGCCAACCCAAAAAAAGTAATGTGGACAAA TCAACTTTCTATTTATCATTACTCATTTTGGAGAGCTCAATGAAATTGCCACACTTTCTCTCTTTTTGCCATTTATGCTT CTTATTATTTCCGTCCTCTCTCTTTCTCTTATCCGCTTCCTAATTTCTTTGATTCTTCCGTTGAATTATATGAACATATA ATTGATTAGTTGAATTTTATATCCTTGGGAATAATTTCTGAGCATTGCAAGGGTAACCAAATCTGTGATTGATTGGTTGT TCATATATTTCATATAATTGCGTAGCGTCGTTTTCTATACCTATAAAACTATTGAGTTGAGCCAAGGCAATTAGGCGGGA GTGCTGGAAGTTGAGTCACAAAGAACAAAACCGATGCACCCACCTTAACCGTTTATGAAATTTATCTATACAAATAAACC ATTATTTGAATTTAAGGCGTAGAATTACCTTGCACCAAAAATTATACTACACACTTGGTAGAGATTTGTGTATACACTAT ACAGGACATATTACTTGTATTTTTCATTTCACGGTTAATTTTAAGAAAATGTTGGGTAATAAGAGACACGAATGACTTTA GACATCAAAAGTGAAAAAAGAAAAAGAAAGTGATTGTAATTTATGATGTTATGTGTTATGATAATTAATTATTACCTCAT GTTTCGGGTTTAACTCTCACATTCTCATAGATAAAGAGTTTGAATCCTCTACTTCCAGTAAAATCTCAGGTGGTGTAACT CTCAATGAGGAGATTCTATGACACTCCTACACAGGAGTAGGTATGCCTCTGCAACATGTTATTGACGTCCTGCCTAGTAG GTTGAAGATTTTTTTCTCCGTTCTACCATTCTTTTATTAAAAAAAGATAAAGAGAAAAAAATTAAGTGCATGTAAGGTGT ATTCTATACTATTTAAATGTCCAACTATCATAATAAGCATTTCATTGTTTATTTGCATAAGGAAAACTAATAACAAAAGT TCGGTACTCTTACAAAAGAGGGTTGGATACCTTTTAATTTCTTGTTTAAAAAAATTA
CDS sequence (LotjaGi1g1v0683500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACTCACTGAGGTTGCTGGTGCCTCCATGGCTTGAACCTCTCCTCCACACACAGTTCTTCACCGTGTGCCGGACTCA CGCCGATGCAGCCAGAAGTGAATGCAACATGTTTTGCCTCGATTGCAATGGTGCTTGTGGTGCCTTTTGCTTCTATTGCC GTTCTTCAAAGCACAAAGATCATCAAGTCATTCAGATAAGAAGATCTTCATATCATGATGTGGTGAGGGTAACAGAGATT CAGAATGTGTTGGATATAACTGGAGTTCAGACTTATGTGATCAACAGTGCTAGAGTTTTGTTCCTGAATGAGAGGCCTCA ACCAAAATCTGGAAAAGGGGTAGCTCACATTTGTGAGATTTGTGGAAGAAGCCTCTTGGACCCGTTTCGGTTCTGTTCTT TAGGGTGTAAGCTTGAAGGAATCAAGAAAAATGGGGATGCAAGCTTTGTTTTGGGGGTAAAGAATGAAGAGTTGATGATG ACAATGGACACTAGAACCACCTCCTCTAGATCACAGCAAGAAGAATTGCGTGAAGGCTCAACTCAAGACATGTATCCGGC CACGCCTTCTCCACCTCCTTCAAGTGCAAGAAGAAGAAAAGGCATTCCCCATAGGGCTCCTTTTGGTTCCTAA
Protein sequence (LotjaGi1g1v0683500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSLRLLVPPWLEPLLHTQFFTVCRTHADAARSECNMFCLDCNGACGAFCFYCRSSKHKDHQVIQIRRSSYHDVVRVTEI QNVLDITGVQTYVINSARVLFLNERPQPKSGKGVAHICEICGRSLLDPFRFCSLGCKLEGIKKNGDASFVLGVKNEELMM TMDTRTTSSRSQQEELREGSTQDMYPATPSPPPSSARRRKGIPHRAPFGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 209 | 204 | 5.4E-123 | – | |
| PANTHER | 6 | 209 | 204 | 5.4E-123 | – | |
| Pfam | 67 | 138 | 72 | 1.4E-27 | ||
| MobiDBLite | 161 | 210 | 50 | - | – | |
| MobiDBLite | 161 | 185 | 25 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0683500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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