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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0698700 |
| Transcript ID | LotjaGi1g1v0698700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT2G37510.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial; TrEMBL-Plants: tr|I3T592|I3T592_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0698700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126654905..126657634) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGGTTGAACTTCGACAGAGACCCTAACAATAGAACCTCATAATGGAAACTTTATGCATTGATGGTATGTGGAGGAT CCGACCTCACGTAACTGAGATGACTCGTTCCACCCAGTGCTAGACATTCATACTCTTGGGTCCTCCCCTTTATGGTGATA TTGTTATCATGCGAACCACGCCACCAACAACCATTCATAGTGTTGGTTTTTTTTTTGTACATCGGAAATATAAATTGCAC CCACCAGGGATTGAACCTGGACCTCCTCCACCCAACCTACATGTCTGCTAACTCTTACAACTTGAGCTATTATTCGGGGA CATCCATAGTATTGGTTTAATGGTAAGCAAATTAATTTTTTATAAAAGTGAGAACATATAGCTATAGTTTTCCAAAGGAG TACATTTGTAAAAATAAAAAAAAAATGTACGCAGGCAGGATGATAGTTTAGGACTCTAGGTCTAGAATTTTCGTCCTGTT TGGTTTGGTGTATTGGGTTTTATAACTTGCGGGTTCTGCGAGGGTTTAAAGGTTTCTGTTCTGAATTCATCTCTGTTCAT GGCTTTCTTCTCTGGAGTTCAACGCTTTCTTCGTCAGTCCTCACATAACCTCACTTCGGTTCGTCTCTGTTCAACAACTC TCACTACCCCCAAACTTTTCATCAGCGGTGAGCTACCTGCCCTTAATTTATCTCTGCTGGTTACCTGATTCCTTCTGTGT TCAAATGAAATTATCTTTTTTCTAATCGTTTTGATGCGCTATGTTGTGCATTCAAATAAGATGCTTTATCAATAATGGGG TTGTGTCTTGAAACTTCCACTGCCTCAAAATTTGTCTTATGAGCTTTATCTGCCCTGTATCTCAGTGTTGGGTCTCTGGT TTGAGGCAGTGATTTGGAGGCAGGATTTTGGCTTTCCGCCATGACCCGACATCCGCAATTAACAACACTGAGTTCAAGTC ATTGATTTAGACAGTGTTACTAAATAATCAATAAGATAAATACTGAAATGTCACAATATGCAGGCCTAGAAAGCTTTTGA TATGTGTGATATGTATTTATTCAAATCAGAAACCCCCTGCACATTTTATTTTTTGCATTGCCATAGAACTAGTTACATTT AAAATGGGTTTTTCCTTGTTGGTGGGCTATGGCTTTAGGATGATTTTTTATTTCATGGCTTCTCTTTGATTTTCAGCACA TGTATCTATTGTTAGGTGTCTTCTGGGTATAAACGCAGGGGGAATATAGATCTCTCTTGCATTCTGCTTCTATTTGTTAT TTTGTCTGAGTAGTAATATCTCCTCTCCCCTTCTTTGTGTTTGTTCTTCGCTTTGAATGAAGCTCCATTTGCTAGTTAAA CAAAGCAGTTGTTAAACCTAGTCCTGAATTTGGATCAGAAGAATTTTAAAACTGGACGAAGACATCAGTCAAAACATTGT AAAGATGGAAATATTGGTCAAAATGAAAAGAAAAGGTAATGTATATGAAGGGAAGAGAGAACATCTGAAGCTCTTTAGTT CATATCTAACCTGGATATCAAATTTGATTTAATTATACCTTAGACTTGGTTGTACATAAAAATTATTTTCCTTAGCAATA CTAATTGAAAGAAAACCAAGTTATCACAGTTATGGGACAGAGTTTCTGTGAATGCCTTAATTGATTTTACCGGTCAAGAA TTTGTTATTTATTTCACTCATATGTTTCGCTAGTTTGCGTAGTTTCGCTAGTTTACTATAGTTATATGCTGCTTGTTTTG GCACCATTTGCTGCCTGGATTTGCTTGGTATTTAATGCATGTTTCACAATCTATGGTGCAAGCATATAATTTATGTTTTA AATCCTATTCTTGAGTTTGGAATTTTGAACAGGTCTTTCAAGACAGACGACCGATCGAAAACTTAATGAAGCATTTGCTC CTTTTGGACAGCTGATCGAAGGTGATAATTATCACTCTTTCTTGCAGTAGTTAGTTCTAGTGTCCTTTTCTTTTCTTCAT GTAGGTTATGCCTGACCTTCTGTCATTTGATTACACAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCCAAAGGTT TCGGTTTTGTATCTTACGCGAGCATAGAAGAAGCTGAAAAGGCAAGAAAAGGAATGAATGCTAAGTTTTTGGATGGATGG GTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCTAGACCTCCTATGCAGTCAGAGTCGCAGCAGCCCTCTGAAACTGG TTTCACAGTTAACAAGACGGTTGGTTGGTGTGGTTGATGATTGAAGAGACTTTGGTAATTTTCACGTCGCTGGGATGATT TTTAAGGACTATTTATAACTCAACTCAGATAAGTATACTGCAATTTGTTGTGAAATTTTTGTATCAGTCAGCTCACTCAT GATTGATTATTGGACTTCAGCCATAAGGCATTATTATTTTTTGAAAATTTTGATGTCCATTGGAAGTTAATTATCCTTTG CCGCCGTGATATGAATTCCACCCAACTTTGTTCCCTAGTATTGGTTATTACTGAGAGATCTCTGCTTGTGAAATTTTCAT TCTTGTTAGTAGCAAGAGGTATCTTTATCTCCTTAACTTTTTCTTTCCTCTATAACAATAACATTATTATGAGATATGGT TGCGTTGGTTCAAGTATTGAAAACATACTAAAGGAAATGGAAGAATTTAACTCAAGGCCAAAAGAATGGTTAGTGCTGAA GGAGGAGTGT
CDS sequence (LotjaGi1g1v0698700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCTTCTCTGGAGTTCAACGCTTTCTTCGTCAGTCCTCACATAACCTCACTTCGGTTCGTCTCTGTTCAACAAC TCTCACTACCCCCAAACTTTTCATCAGCGGTCTTTCAAGACAGACGACCGATCGAAAACTTAATGAAGCATTTGCTCCTT TTGGACAGCTGATCGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCCAAAGGTTTCGGTTTTGTATCTTACGCG AGCATAGAAGAAGCTGAAAAGGCAAGAAAAGGAATGAATGCTAAGTTTTTGGATGGATGGGTTATATTTGTTGATCCTGC CAAACCAAGAGAGCCTAGACCTCCTATGCAGTCAGAGTCGCAGCAGCCCTCTGAAACTGGTTTCACAGTTAACAAGACGG TTGGTTGGTGTGGTTGA
Protein sequence (LotjaGi1g1v0698700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFFSGVQRFLRQSSHNLTSVRLCSTTLTTPKLFISGLSRQTTDRKLNEAFAPFGQLIEAKVITDRASGRSKGFGFVSYA SIEEAEKARKGMNAKFLDGWVIFVDPAKPREPRPPMQSESQQPSETGFTVNKTVGWCG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 12 | 122 | 111 | 1.1E-25 | ||
| PANTHER | 13 | 137 | 125 | 8.1E-58 | – | |
| PANTHER | 13 | 137 | 125 | 8.1E-58 | – | |
| ProSiteProfiles | 31 | 109 | 79 | 17.984 | ||
| SUPERFAMILY | 31 | 121 | 91 | 2.28E-28 | ||
| SMART | 32 | 105 | 74 | 4.6E-24 | ||
| Pfam | 33 | 99 | 67 | 1.2E-18 | ||
| MobiDBLite | 108 | 130 | 23 | - | – | |
| MobiDBLite | 115 | 130 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0698700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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