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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0701000 |
| Transcript ID | LotjaGi1g1v0701000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein 48; TAIR: AT2G27790.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|A4FVJ7|RBM48_DANRE RNA-binding protein 48; TrEMBL-Plants: tr|I3SBA0|I3SBA0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0701000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:126910624..126912671) extracted from Lotus japonicus Gifu genome v1.2.
CAGATATTTGATTGTACGGAATGTTCCAGCATTAGGTTGCGGAGATGATTTGAGGAAATTGTTTTCATCCTATGGAGAGA TTGAGGAGTAAGTCTATTTAATGACTTTGCAGAGTGCGCCTTTATTCTCCTTGTTTTTCTCAAATAGCTTCATTCTTTAG GTGTAACCCAATGGATGCAGAGGATTGTGAGCCCTTCACCGATGTCTATTGGATTAAATTCCGCCTTTTCAACAATGCCA GGTCTTCCCTTGCTTCTACATGAAGTAGTTATATTATGAATTTGGGTGTAGGGTTTATTATGTTTGAACAGCCTAAGGAT GCTTAACAAAATGATTTATTTCTTATAGATTTTATATAAAACAGAAGTTATTCTTTATTTTGTTACAATTATAAAGTACC TGTAATTATTTTTTATTCAAAAGTTACATAAAGTAGCTTCTAAAAATAATGAGAAATCTAGTTTTTCTTTAGATTCTGGT TTCCTTTTTAAGAAAGTCAAAACAAACACACTCAATTTTTAAGTGAATTTTTCATGAAGAAGCCTATAACAAAAGTTATC AGGATTGTTAAATCAGTTAGCAGTTGGTTATTATTATTACAATTAGTATGGTTTTCTGTTAGTTTTAGACGTGAACTATA TATATGTATCGCAAGTAATAGAATGAAAATATTTTTCTTCCTTTTCACTCTCCATCTTAACATGGTATCAGAAGTGAGTT GATATTCTTCTCTGCATGCTCTTTCCACCTATAATTTTCAGGTTTGCAAAAAGAAAACTGGATGATTTTGTTTTCCTTGG GAACCGACTGCAGGTTTCATATGCTCCCCATTTTGAGAGTCTCTCAGACACAAAGGATAAATTAGAGGGAAGAAGAAGGG AGGTTTTAGCACGTTTGAACCGTAAGTTAAAGCTTATTTTTAAACATTGGCAGTTAGGCATGCTATATAAGACTAACTAT TAATGCTTGATAAGTGAATTATTGTAATGGCATTTTATCAACTTATTTAATGTATTCCCTAAACCCCATGCTATTAGCTA GAAGACCTCAAGTGACTGCAGCCTCAGGATCTAGGCCTTCGATTACCTCAAAGACCACTTCCCTATCAGAAAATTTAGAT CATACTGAAAGGTAATTTTATTTTTCCAAATGCACAACAGTTCCTTGCTTCCACCTGAAGCTAAGGCATTGCGGATAAAT GATTCTTTTCTTGACCATAGGGATCTAGCATTTGAAGGAAGGTCGCACAACGGTAATCTTCAAAAAAGAACAGTTTCTTC TAATGAGGTTAGTCACTTCCTCAAATTGGTGGAGATATTTTGGGTGGGAATGAACAAAATTCTTCCTTGCAATAAATGTT GCTAGAATATGTCTTAAGACGTCCTGAATTTAATTTAAACGAGAACCAATTGGAAGAAACATGTATTCACTAGTATTATC TAAATGTTCAACTATTTTCATATCTATGATGGTAATTCTTGTTTCACAGTTGTAATGTTTGTTACAATATGTTAGGACAT GGATTGGTGGATTTGATATAGAAGTTTCCCATGTTATTAGACATATTTATTTTTGGCTCATACTAACATGTCCTATAAAC AGGATTATTTTGCTTCCCATTCCATGAATCAAACAGTAAAGGTTGTCCGCGATAAGCTCGATAAGGTGATTATTCTATTT CAGAATATCTTTTGAAATATTTTATGAGTGTGTTGAACTTTGAAACAATTTCTTCTTCCCATCTAGATTCAATCCAGTGG AGAGCATCTACAAGATGGACCTGTATCAAAGAAATCAAGAGTTGATAATAGGAGGAGGATTTAATATATGTGAAGTTAGA GTTGTATACAACTATGATCTTTTTTTCAGTCTCAATTTGTTGTAAATTGATAAGATGTGTTTTTATAGGACTCAAATCAA GTACGTGGAATAGCTGATTCACCATATCTTCAATGAAAATTCTGATTTTTATTATTTTCAGGGCTTAGGGAAATATCATA ACTGATGATCATATTATGATGGTTGTGTTAAATATTTTAGTAGTTTAC
CDS sequence (LotjaGi1g1v0701000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGCAGAGGATTGTGAGCCCTTCACCGATGTCTATTGGATTAAATTCCGCCTTTTCAACAATGCCAGGTTTGCAAA AAGAAAACTGGATGATTTTGTTTTCCTTGGGAACCGACTGCAGGTTTCATATGCTCCCCATTTTGAGAGTCTCTCAGACA CAAAGGATAAATTAGAGGGAAGAAGAAGGGAGGTTTTAGCACGTTTGAACCCTAGAAGACCTCAAGTGACTGCAGCCTCA GGATCTAGGCCTTCGATTACCTCAAAGACCACTTCCCTATCAGAAAATTTAGATCATACTGAAAGGGATCTAGCATTTGA AGGAAGGTCGCACAACGGTAATCTTCAAAAAAGAACAGTTTCTTCTAATGAGGATTATTTTGCTTCCCATTCCATGAATC AAACAGTAAAGGTTGTCCGCGATAAGCTCGATAAGATTCAATCCAGTGGAGAGCATCTACAAGATGGACCTGTATCAAAG AAATCAAGAGTTGATAATAGGAGGAGGATTTAA
Protein sequence (LotjaGi1g1v0701000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDAEDCEPFTDVYWIKFRLFNNARFAKRKLDDFVFLGNRLQVSYAPHFESLSDTKDKLEGRRREVLARLNPRRPQVTAAS GSRPSITSKTTSLSENLDHTERDLAFEGRSHNGNLQKRTVSSNEDYFASHSMNQTVKVVRDKLDKIQSSGEHLQDGPVSK KSRVDNRRRI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 170 | 170 | 1.2E-55 | – | |
| PANTHER | 1 | 170 | 170 | 1.2E-55 | ||
| MobiDBLite | 73 | 98 | 26 | - | – | |
| MobiDBLite | 75 | 94 | 20 | - | – | |
| MobiDBLite | 147 | 170 | 24 | - | – | |
| MobiDBLite | 156 | 170 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0701000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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