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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0702600 |
| Transcript ID | LotjaGi1g1v0702600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 28 kDa ribonucleoprotein, chloroplastic; TAIR: AT2G20310.1 RPM1 interacting protein 13; Swiss-Prot: sp|Q0ADY0|DAPE_NITEC Succinyl-diaminopimelate desuccinylase; TrEMBL-Plants: tr|K7MYT3|K7MYT3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0702600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127102903..127106809) extracted from Lotus japonicus Gifu genome v1.2.
GGATTTAATTCCCCATTAGAGAGTCTTCTCAACTTCCCCACTCCCCTCTCTGCTCTGTTCTCTTCTGCAATTCAAAATTT CTCATGGCCAACTTTAATGTCAAAGAAGTTATTCATACACAGAAAGTTGATGAATTTGGCTAAAAAATCACAACCCCACT TCGAGTTCACTCCAAAAATTTGATCTTTTTAAGGTTACAAGTCAAGAATTTGAACTGGGTTTTACACCAGTAGTGATGAG TTTGGTTGAAAAATCTCTACCCCACTTCGAGTTTGCTCCAAAAATTTGATCTTTTTGTGGTTTCAAGTCAGGAATTTGAA CGGGGTTTGCAATTTGCACCAGTAGTGTATGGAGTCTGTGCTACCATTTGTGGTGTATATAAGCTCTGACGAAGAAGAAG AAGAAGAAGGAGGAGGAAAACGGCGGCGTTTGGAAGAGAAGGTGGTGGATATGAGCAGCACTGACTATGAATGGATGAAG GGGATAAAGGGGTTTCTGGAAATGGGCCATGAAGAACAAGGCGAGGTTGCTTTGTTGGGAAAAGCAGAACATGAGTCAAA GATTTTGAAAGAAGGTGGTGATGGTGATGATGATGATGATTGTGTGATTCTTGAGGGTGACCCGGAGAAGCTTGCTACCT CGGTGAATGACTCGGCAACTGGGTCAGACTCGGATGAGTTGTTTGTTGTTGGGGAGAAGGGTCAGGTACTTTCTCAAATC TCACTATCTCAGTATGTTTTTTTTTCATTTTTTGATTTAATTATTTGTTAGTGGGAAAGAAAAGAGTTGTTTAATTGATG AAATTTACGTGTGCTGCATGACATTGATGTATCTTGTGTGTTGAAAGTTACTTGCATCAACAGTAATCAAGACATTGATT ATTGTTGTTATTTTTGTGGCATTTCTTGATTTCTGGTCTGGCAAAAAGTTGCTTTAATAATGAATGGATTCATATAATAA GACTGAAATTAGAATCTTTGGTCCTAATTGAAATGCTAGAATAAACTAGTACAAGAATGAGTAATCTTGCATCCTAACTC CCTCGAATACCCTAGAACTCAGGGTGCATTACAGAACAAGGACCTAACCCCTTAGAGAAAGCCACTATGAATCTACCAAG ATGATCCCTTATAACACTTAGAGTTCAGTTTAACCCAATTCTCAGGAGGAGGAAACCAACGAATGACAAGAAACCAATCC GGATCACCCCCAAAACCCACATTGCTGCCTTCAATAAATGCTTTATGACTGCAAAGGGAAAAATAACTCTGAACAGAATT CCCAAATATAGCCTTTTCCCTTTTACTCCAAATAGCATCATTAGCCACCCCAAAAATTGTATTCCAAACTTCTGCATTCT CTGCTAGATTAAGTCCATATTGAAAAAATTAGGACCAAGGCCTTGAGGACACACCTTCCTCGAAGCTAAGGGGTAAATGT TACTAAATCATTTTATTGTCATGAATTTTCGTTAAACGTTATTTTAAGCTTTGCGAATGGAAATTCAAACACAAGTGATT CCATTTGCCAATGAAGTTAACTTTTTGTGCATTACTTATTTATACTGAGATGACAGGCACTTGCTTTTAGAATTTTAGTG TAGCATTATTGATTGTTATTTGCTCATTTTTCTTTCTTTTTTTGTGCTAATTTTTCTTGGTTTTCATGCATGAGGTTGTT TACTTGGAACTCCAATTTCCGTACACTTTTTTCCACTTATTAATGAAGATTTATCTCTAGAATGTTAGATGTGGTGGTTC AATTATGTTTTTGAATTGCAGATTGCCTGCAGAGACTACCCTCATCCCCGGCATCTTTGTGGCAATTTTCCCTATTCTTC CACCCCTCACCAGAGACATTGTAGCCAGGTAAAGATTATGATAATACATTGCTTAAGGATGTCAGAATTTAGATACAATT CATTAGCTGATTTAATTATAACTGACACTAATGATATTTAGACACACAAATAGTACAAACATACAACAAACACCTTTTTT TTTCTCTCTATCTCTCTCTTCTTATCACATCTAGGGAATTGATCTTTGTTATGAAGGATTTCAGCATGAAACATATGAAT TGAGTACTTGTTTTTTATTCCTCCAATGAGAAGCAATCATTTTATGTTTATTCATTTTGAAAATTTACTCTCATGATACT ACGTCTACTGTTCATGTATTTCGTAAGAAAAAGTTCCCGTACTATTTAGCATTGCTTTATATTCCTTGTTTTCCTTTCTC ACTCTGGATGTCTGTTGAATGTCTGCACTATGCGGAAGTCTACAAATCATTTTCTTTGTTTTCATGTTATCTGCTGTTCG ATATTATACTTTCATCACCCTGACTTGTGTTGTTTTTGGATGAAATGCAGTGCCATTGTTATGTTTGTGACGCCCCAGCA CCATGTCCGAAATGGGGCACAGGTCTTTCTAGTGCAGATCATTGTCATGCAACAGATAAATCTGAGATGTGGAAAATTCT GAGGCATAGTTCCAAATTGCGCAAGTCTGCTTCCTTAGCAGATCCAACCACATTGGGCAAGGCTGCTTCCTTAGCAGCTC CAACCAAATTGGGCAAGGCTGCTTCCTTAGCAGCTCCAACCAATTGTGGTAGTCTTGGTGATGTTGTGAATTTCCAACAT AACTACACTATGCCCCTTGATATCATACTGTCTCCAAATTCCATGTTTTTGAATCAGCCATCTAGGCCACCTCCAATACA GACACACTCCTTAGAAAATAGCATACCTCAAGATCGAGCCTCTCAGCAAGTTCTACTGAATCCCAGCTTAATACATCCCA GCTCACTGAATCAGCTTTCCAAACTAAATACTGTACCTTTATGCTCCACAGCCTTCAACTTTACAACATCGAATGGTGCA AACCATGGTAGATATCAAGAGTTAGAATCGACTATGGTGAGAAACATATACCAGTCTCATTCTGATCCAAGGGAGTTGCT AGGTGTAAGTAATCATGCCATCCAAAGAGAGACAGGACTGGAAGCTTGGAGTTTAAGGCCTCCTTCTTCTCATGTGATGT CCAATGGAGTAAGTAACCTTGGTTTTGGGAACAACTTGACAATGAACCAGTCTACTCAAGGTGCATCCGGCTTCACCAAT TATGTCAATCCAGCGCCGCAATATGACAGATATCATGCTGCAACAGGATTTTCAAATAGCAGAACCTGTTTCGAACCAGC TTATGAACCCCGATCATATTACCAATCAAATGATAGCCAGAATTTCGATGGAAATTGTATTCAGGGTAATGCAGCTCCTC CTTCGAGTTATATGGCTCACCTGAATAGAAATCAGCATTTATATGAGCCTCAAGTTGGAACTCAAAGTAAACTTGCAGGA AATATTCTTGAATATGGAGCTACAAGGCAAGATGGTTACCAGTTGAGACCTCATGATGAGATTCAAAGTGAATATTCAAG AATGGCAGGTCTTACAGCCTTCGATTCAAGTTGGATTGAGAATACCAGTAACAACCTTTCTGGTCTTCAAAGCTCAGGAT CTATGAGTATACCAATCTCACCCTTTGTAGAGGAGTCTAGTGCCCAGTTTCAGGGAAGCACTACTAATCTCTCAATGGGT GATATCAAACACTGGCCTTTTGATGGAAACTAAGTACCACTTGAAGTGGATGATGTTGATGCTTGGGCATTACTGACTTT TACTTTTTTTTTTCTCAACAGTTTTAGTGACTTTTTAGCTCAGCACCTGCATTAGACTCATAACTCAGATATAATTAGAG TAAGTGTTCATATTTCTAATCAGCGCACATTCCAAGACAGTTCGAATGTAATTTTGGTCAATTCATGTCTCTTATGTCAT TGGAGTGAATGTATCCGTGACTAACTTGAACGTATATAGTATATACAATCAAACACTAAACTGTCGG
CDS sequence (LotjaGi1g1v0702600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTCTGTGCTACCATTTGTGGTGTATATAAGCTCTGACGAAGAAGAAGAAGAAGAAGGAGGAGGAAAACGGCGGCG TTTGGAAGAGAAGGTGGTGGATATGAGCAGCACTGACTATGAATGGATGAAGGGGATAAAGGGGTTTCTGGAAATGGGCC ATGAAGAACAAGGCGAGGTTGCTTTGTTGGGAAAAGCAGAACATGAGTCAAAGATTTTGAAAGAAGGTGGTGATGGTGAT GATGATGATGATTGTGTGATTCTTGAGGGTGACCCGGAGAAGCTTGCTACCTCGGTGAATGACTCGGCAACTGGGTCAGA CTCGGATGAGTTGTTTGTTGTTGGGGAGAAGGGTCAGATTGCCTGCAGAGACTACCCTCATCCCCGGCATCTTTGTGGCA ATTTTCCCTATTCTTCCACCCCTCACCAGAGACATTGTAGCCAGTGCCATTGTTATGTTTGTGACGCCCCAGCACCATGT CCGAAATGGGGCACAGGTCTTTCTAGTGCAGATCATTGTCATGCAACAGATAAATCTGAGATGTGGAAAATTCTGAGGCA TAGTTCCAAATTGCGCAAGTCTGCTTCCTTAGCAGATCCAACCACATTGGGCAAGGCTGCTTCCTTAGCAGCTCCAACCA AATTGGGCAAGGCTGCTTCCTTAGCAGCTCCAACCAATTGTGGTAGTCTTGGTGATGTTGTGAATTTCCAACATAACTAC ACTATGCCCCTTGATATCATACTGTCTCCAAATTCCATGTTTTTGAATCAGCCATCTAGGCCACCTCCAATACAGACACA CTCCTTAGAAAATAGCATACCTCAAGATCGAGCCTCTCAGCAAGTTCTACTGAATCCCAGCTTAATACATCCCAGCTCAC TGAATCAGCTTTCCAAACTAAATACTGTACCTTTATGCTCCACAGCCTTCAACTTTACAACATCGAATGGTGCAAACCAT GGTAGATATCAAGAGTTAGAATCGACTATGGTGAGAAACATATACCAGTCTCATTCTGATCCAAGGGAGTTGCTAGGTGT AAGTAATCATGCCATCCAAAGAGAGACAGGACTGGAAGCTTGGAGTTTAAGGCCTCCTTCTTCTCATGTGATGTCCAATG GAGTAAGTAACCTTGGTTTTGGGAACAACTTGACAATGAACCAGTCTACTCAAGGTGCATCCGGCTTCACCAATTATGTC AATCCAGCGCCGCAATATGACAGATATCATGCTGCAACAGGATTTTCAAATAGCAGAACCTGTTTCGAACCAGCTTATGA ACCCCGATCATATTACCAATCAAATGATAGCCAGAATTTCGATGGAAATTGTATTCAGGGTAATGCAGCTCCTCCTTCGA GTTATATGGCTCACCTGAATAGAAATCAGCATTTATATGAGCCTCAAGTTGGAACTCAAAGTAAACTTGCAGGAAATATT CTTGAATATGGAGCTACAAGGCAAGATGGTTACCAGTTGAGACCTCATGATGAGATTCAAAGTGAATATTCAAGAATGGC AGGTCTTACAGCCTTCGATTCAAGTTGGATTGAGAATACCAGTAACAACCTTTCTGGTCTTCAAAGCTCAGGATCTATGA GTATACCAATCTCACCCTTTGTAGAGGAGTCTAGTGCCCAGTTTCAGGGAAGCACTACTAATCTCTCAATGGGTGATATC AAACACTGGCCTTTTGATGGAAACTAA
Protein sequence (LotjaGi1g1v0702600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MESVLPFVVYISSDEEEEEEGGGKRRRLEEKVVDMSSTDYEWMKGIKGFLEMGHEEQGEVALLGKAEHESKILKEGGDGD DDDDCVILEGDPEKLATSVNDSATGSDSDELFVVGEKGQIACRDYPHPRHLCGNFPYSSTPHQRHCSQCHCYVCDAPAPC PKWGTGLSSADHCHATDKSEMWKILRHSSKLRKSASLADPTTLGKAASLAAPTKLGKAASLAAPTNCGSLGDVVNFQHNY TMPLDIILSPNSMFLNQPSRPPPIQTHSLENSIPQDRASQQVLLNPSLIHPSSLNQLSKLNTVPLCSTAFNFTTSNGANH GRYQELESTMVRNIYQSHSDPRELLGVSNHAIQRETGLEAWSLRPPSSHVMSNGVSNLGFGNNLTMNQSTQGASGFTNYV NPAPQYDRYHAATGFSNSRTCFEPAYEPRSYYQSNDSQNFDGNCIQGNAAPPSSYMAHLNRNQHLYEPQVGTQSKLAGNI LEYGATRQDGYQLRPHDEIQSEYSRMAGLTAFDSSWIENTSNNLSGLQSSGSMSIPISPFVEESSAQFQGSTTNLSMGDI KHWPFDGN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 8 | 481 | 474 | 4.1E-87 | – | |
| PANTHER | 8 | 481 | 474 | 4.1E-87 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0702600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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