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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0718600 |
| Transcript ID | LotjaGi1g1v0718600.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Patatin; TAIR: AT3G63200.1 PATATIN-like protein 9; Swiss-Prot: sp|Q93ZQ3|PLP9_ARATH Probable inactive patatin-like protein 9; TrEMBL-Plants: tr|A0A0R0ENK9|A0A0R0ENK9_SOYBN Patatin; Found in the gene: LotjaGi1g1v0718600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:128715386..128717930) extracted from Lotus japonicus Gifu genome v1.2.
TACTTCAGTTTAATTCCTGACTTTATAACTAACTTAAACTTTGAGTCAATCTTATTGTGCCGATAATATCAATTCAAACA TTGTGTCTATCTATTTGTTCATAAATATTCATATGATCTCAAATATTTAACATTCTGTCTTTCACTTCAAAACAAATGAC ATGAGATCGAGTTTGTACCCAAACAAAGGACGTGAGAGTAATATAAAATTTTGGAGAGGCATGAAATGGTAATTAACTTT AAATTCTCTTAACAATGCTAGTTTTCTGGGGTTGAATTGAACTCTACTCGAACTGGTATATAATATACTCTGCACTTCCT TTCCAGGTTGATTCCTTGTCAACGTGAGTAGTGAAGATTGAGATTTCCAGTCATCTTCCTCATCTAGATCACTGAGCTAG CTGCTGCAGCAGGCAATACAAAATTAAGCTGGCAACAAAAATTAAATTCAAGGAAAGACACCAGAAACCACCCCAAATCT AACTAAAAACAAAACATATATCATCATAAAATAAAACAAATACAGTCTAAACACAACAGATAGTCAGTGACAACAGTAGA GACTAGAGACTGTATAGTAGTGTAGTGTAGGCAGTGATAAGCGCAAGCCGAGCCGGCTGACCCATAATAACACGCGCAAT TGCACGTGCCAAACCCCACTCCTCACACGTACGAGTGGAGGAAACGACAAAAGCGTCGTGTCTGTATATAACTACCCCAC TCCCAAACTCAACTATTCACTTTCTCTGTTCCATCTTTCTCTCACTCACTTCACTCACTCACACTCTGAATTGCAACACA ATGGAGTTAAGCAATGTGACCCTCGAGATCTTCACCAAACTAGAAACCAAATGGCTTTCCCACTGCGAATCCACCGTCAA AACCCGCATACTCACCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGAGCCGCTTTAATCCACCTTGAGGACCAGA TCCGATCCCAAACCTCCGACCCCCACGCACAAATCGCTGACTACTTCGACATCATCGCCGGCACCGGCATTGGCGCAATC CTGGCCGCCATGATCACCGCTGACGACGGTTTCGGCAGGCCACTCCACACCGCTAAAGACGCTGTTGACATCATCACTAA CAAAAACAAAGAACTCTATAAGGCGAAGTTCGCCGGGGTTTTCCGCCGGCAACGGAGATTCTCCTCGAGAAGCATGGAGA ACACGTTGAAGCAAGTCTTCTGCCGAAAAGAAGATCAACGACGTTTGTTGACACTGAAGGACACGTGTAAGCCATTGTTG ATCCCTTGCTTTGATCTGAAGAGCTCTGCGCCGTTCGTATTCTCCAGAGCCGACGCGTCGGAATCGCCGAGTTTCAACTT CGAGCTCTGGAAGGTTTGCCGAGCCACGTCAGCGACGCCGGGGGTGTTCAAGCCATTCCAGTTTAACTCCATCGACGGAA GAACCTCATGCTCCGCCGTCGACGGCGGATTGGTTATGAACAACCCGGCGGCAGCGGCGGTCACGCACGTCCTCCACAAC AAGCGTGACTTCCCGTCAGTGAACGGCGTCGAGGATCTCCTTGTTCTCTCCATCGGGAACGGATCGCCGGTGAGGAAAAT GAGCGACCACCACCGCGAGTGCTCGACGTCGTTGGTGGTTGACATCGCGCTCGACGGCGTTTCCGAGATCGTTGACCAGA TGGTGGGAAACGCATTCTGTTGGAACCGTACGGACTACGTGAGGATTCAGGTACGCTGCGCTAACACCAAAGCCAATGTC TCTTTCTCTTTCTGTTTCTGTTTCTGTTTGTTTCCCGAGAAAATGAGGAACGAGAAAAGAATTGACGGCGTGTTTTGTTG TGCAGGCGTTTGGTTTGGGAGGAGAAGAAAACGATGTGTTGAAAGAGAGAGCGTTGGAATCGTTACCGTTTGGCGGGAAG CGGTTACTAGAAGAAAGTAACGGTGAGAGGATCAAGAGCTTCGTGCAACGCCTTGTTGCTACCGGAAAATCTAGTTTACC ACCAAGTCCTTGTAAGGTTCCGCCGTAAGCTTTGTCGCTGACGGCAGTTTTTTGTTGTTGTTGACGGTGGTGTAAGTTGT AGTAGGAACTTGTATGATGGAGTGAATAGCAGTTAATAAGAGTTTGACTTTGACTTCATGTTAGGGAAGGAAGGTGTGAG GTGAAGTGGTTTTCTAAAGTGGGACATGACGATTTGAGTTTTGTAGAACACACCTAATTAAATGGTAGTAACTGCGGTTA ATGTGATTGGTAATTTCCCAAAATGGCTGCGTGATTCGTGGAGATGGAGCTCCACGACTATACTCGTGAGTCGTGACAAA CCTATTTCTATAACTCTCTTTTTTTAAGAATAATCACGTTTTTGTGCTCCATTTGTGGTTTTTGTCTTTTTTAATTCAAT TTGATAAATGATGTATAAATGTAAGGGTATTGTTCAGGTAGTATTGAAATGAGAAGATATAGTATCATTTAGTTCATTAT TTAGATTATAATGGAGTGAAGAGTTGTAAATTTAAAAATTACATAAAAAAATAGAGTAAAAAGAG
CDS sequence (LotjaGi1g1v0718600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGTTAAGCAATGTGACCCTCGAGATCTTCACCAAACTAGAAACCAAATGGCTTTCCCACTGCGAATCCACCGTCAA AACCCGCATACTCACCATTGACGGCGGAGGAACCACCGCCATTGTCGCCGGAGCCGCTTTAATCCACCTTGAGGACCAGA TCCGATCCCAAACCTCCGACCCCCACGCACAAATCGCTGACTACTTCGACATCATCGCCGGCACCGGCATTGGCGCAATC CTGGCCGCCATGATCACCGCTGACGACGGTTTCGGCAGGCCACTCCACACCGCTAAAGACGCTGTTGACATCATCACTAA CAAAAACAAAGAACTCTATAAGGCGAAGTTCGCCGGGGTTTTCCGCCGGCAACGGAGATTCTCCTCGAGAAGCATGGAGA ACACGTTGAAGCAAGTCTTCTGCCGAAAAGAAGATCAACGACGTTTGTTGACACTGAAGGACACGTGTAAGCCATTGTTG ATCCCTTGCTTTGATCTGAAGAGCTCTGCGCCGTTCGTATTCTCCAGAGCCGACGCGTCGGAATCGCCGAGTTTCAACTT CGAGCTCTGGAAGGTTTGCCGAGCCACGTCAGCGACGCCGGGGGTGTTCAAGCCATTCCAGTTTAACTCCATCGACGGAA GAACCTCATGCTCCGCCGTCGACGGCGGATTGGTTATGAACAACCCGGCGGCAGCGGCGGTCACGCACGTCCTCCACAAC AAGCGTGACTTCCCGTCAGTGAACGGCGTCGAGGATCTCCTTGTTCTCTCCATCGGGAACGGATCGCCGGTGAGGAAAAT GAGCGACCACCACCGCGAGTGCTCGACGTCGTTGGTGGTTGACATCGCGCTCGACGGCGTTTCCGAGATCGTTGACCAGA TGGTGGGAAACGCATTCTGTTGGAACCGTACGGACTACGTGAGGATTCAGGCGTTTGGTTTGGGAGGAGAAGAAAACGAT GTGTTGAAAGAGAGAGCGTTGGAATCGTTACCGTTTGGCGGGAAGCGGTTACTAGAAGAAAGTAACGGTGAGAGGATCAA GAGCTTCGTGCAACGCCTTGTTGCTACCGGAAAATCTAGTTTACCACCAAGTCCTTGTAAGGTTCCGCCGTAA
Protein sequence (LotjaGi1g1v0718600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELSNVTLEIFTKLETKWLSHCESTVKTRILTIDGGGTTAIVAGAALIHLEDQIRSQTSDPHAQIADYFDIIAGTGIGAI LAAMITADDGFGRPLHTAKDAVDIITNKNKELYKAKFAGVFRRQRRFSSRSMENTLKQVFCRKEDQRRLLTLKDTCKPLL IPCFDLKSSAPFVFSRADASESPSFNFELWKVCRATSATPGVFKPFQFNSIDGRTSCSAVDGGLVMNNPAAAAVTHVLHN KRDFPSVNGVEDLLVLSIGNGSPVRKMSDHHRECSTSLVVDIALDGVSEIVDQMVGNAFCWNRTDYVRIQAFGLGGEEND VLKERALESLPFGGKRLLEESNGERIKSFVQRLVATGKSSLPPSPCKVPP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 369 | 368 | 4.7E-213 | – | |
| PANTHER | 2 | 369 | 368 | 4.7E-213 | – | |
| Gene3D | 17 | 361 | 345 | 1.9E-72 | – | |
| SUPERFAMILY | 28 | 314 | 287 | 2.56E-46 | ||
| CDD | 30 | 311 | 282 | 6.62272E-60 | – | |
| Pfam | 31 | 233 | 203 | 6.0E-23 | ||
| ProSiteProfiles | 31 | 234 | 204 | 40.838 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. |
Expression pattern of LotjaGi1g1v0718600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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