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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0727700 |
Transcript ID | LotjaGi1g1v0727700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | heat-inducible transcription repressor; TAIR: AT4G02800.1 GRIP/coiled-coil protein; Swiss-Prot: sp|B9L1M7|CINAL_THERP CinA-like protein; TrEMBL-Plants: tr|A0A151RKW7|A0A151RKW7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0727700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:129937784..129939852) extracted from Lotus japonicus Gifu genome v1.2.
AAACTCACTTTTCATTTTCAAAACTAGCCGTTATCCTTAACTCACTCACACTTCTCTCTCTAACACTCTCTCTCTCTCTC TTCCAATGGCAACCTCGTTGGAGACACCTTCATCTCCTCCTCTCCTCCTCAACCAGGTTTTTGACATTTTCCTTAAAGCA GCTCAGGTTTTGCTATTTGTTTTGTTTCTGAATTGTTTGTTGTTGGATTGTGATAAACATTAACAGGATCATAGTACAAC AAGTGTTATGGGTTGTTCTTCTCCTTTGCTATCTCCATCCTCTGATAAACGTTTCTGGAGCACTCTCCGGACCAGGGTTG AAACTATTCTTGATGATCGTGAACACAAAATCTCAGATCCTCAACATCCCTCTACCTATAAGGTTAGTTTCAGCTTCTGT CTGCTTGCACAATTTTTTGATTGGATTTGATTCTATAAGATTCATGTAAAATAATATCAAATTGATTGATGGGGTTTATG AAATTTGTCGTTTGTTGTTGTAGAGTGAACAGAGCAACCGGTTGAAGGAAGATTCAATGTTACTGATGAGAGGGTTTGAC TCTGTTGCTCACACACTGTCTCTGATGTCTAGTAATTTAGACAATGCCCTTCAGGTATTCTTCTAACTCCTAATGTTCAC AGAGTTTATGTTTCTAACTCCTAATGTTCATAGAGTTAATGTTGAATGATAGAAAGAGTGCTAAAATTCAGGGTTACTCT GTTTATTAATAACACTAATTTATCATTCCTCTATATTTTCAAGTAGTACAATTAAATGCTGAAGATTCCTTGATATTAAA GCTTGTAGATGTTCAATTTTTTTCACAGGGTGCTAGAGAATTGGCCAATCCACCCACCTTAACTGATATATTCCACAGCA AATTTGATAAGGCAGAAACCAAAGAAGAGAAACAGAGAGAAGGGAAGTCAAAGCAAGGAGTGAAAAGGAAAATTGATCAC AATGATGTTGTTTCTGAAGAGAATGTTGTTGACCCACAAGTGGGGAATGGGCAAAAACTGCAAGATGGGAACTTCAAGAA AGCGAAAAATGTAGGTGTTCTTTTGTTCTTAATTTATTGATTAGTGAGAGATTGGCTTACCAAAGTTCTAAGCAAATTGG CATTACTTGTTATTCAATATTCAGCTTGCAGTTTCAATGGCAACCAAAGCAGCTTCACTTGCTAGAGAATTGAAGTCTAT TAAATCAGATCTATGTTTTATGCAAGAAAGATGTGGTTTGCTTGAAGAAGAGAACAGGAGACTCCGTGATGGATTTGAAA AAGGAGTTAGGCCAGAGGAAGATGATTTGGTATGACAAAATCCACAATAATCTTGCATTTGTTATCTTAAATTAAAAATG TGTTCAAACTGCTACGATGGAGTGGTGGTTGGTTCAAGTGCTACACCATTCGTAGTAGTTAGGTTACTATGAAGTGAATA TTGTCGGCTCGAAAAGTATCATGACAAAAACTATGCATAACTCCAATTATTATTGTGGTGTCTGCAGGTGAGGCTTCAAC TTGAGGCACTTCTAGCTGAGAAATCAAGGCTTGCCAATGAGAATGCAAATCTTATAAGAGAAAACCAGTGTCTTCACCAG CTTGTTGAGTACCACCAACTTGCATCTCAAGATGATCTCTCTGAATCTTACGAGGATGTCATCCAGGGAATGCACTTAGA CTTCTCATCTCCGCCGCCAACAATTGCCGCAGAAGAGACAAGGGATGAAGATGGTGATGATGAGACAAATAGAGAAGAAC CACAAACACCAAGTAAAAATATCTGCAAATCCTCTAATTCACTTGATGATGGAGAAGAAGAGTAAACCAAATTTTCAAGC ACCATCATGACATCCACTGTCACTGTGTAATATATGATGCTGCAAAATATTCCTCGTATTTCACCACTATTAATATTTTC TTATCCTCAAAATAATAATGTGATGGCAATTCCAATTTTTAAACACAATCTCCACCTTATTTCGGATTTCTGTTCCTAAG GATAATTACAATTCACGCATTCATGTAATCTTATTCGTTCAATAAGAAATTGGATAACCGTCAGTGGCA
CDS sequence (LotjaGi1g1v0727700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAACCTCGTTGGAGACACCTTCATCTCCTCCTCTCCTCCTCAACCAGGATCATAGTACAACAAGTGTTATGGGTTG TTCTTCTCCTTTGCTATCTCCATCCTCTGATAAACGTTTCTGGAGCACTCTCCGGACCAGGGTTGAAACTATTCTTGATG ATCGTGAACACAAAATCTCAGATCCTCAACATCCCTCTACCTATAAGAGTGAACAGAGCAACCGGTTGAAGGAAGATTCA ATGTTACTGATGAGAGGGTTTGACTCTGTTGCTCACACACTGTCTCTGATGTCTAGTAATTTAGACAATGCCCTTCAGGG TGCTAGAGAATTGGCCAATCCACCCACCTTAACTGATATATTCCACAGCAAATTTGATAAGGCAGAAACCAAAGAAGAGA AACAGAGAGAAGGGAAGTCAAAGCAAGGAGTGAAAAGGAAAATTGATCACAATGATGTTGTTTCTGAAGAGAATGTTGTT GACCCACAAGTGGGGAATGGGCAAAAACTGCAAGATGGGAACTTCAAGAAAGCGAAAAATCTTGCAGTTTCAATGGCAAC CAAAGCAGCTTCACTTGCTAGAGAATTGAAGTCTATTAAATCAGATCTATGTTTTATGCAAGAAAGATGTGGTTTGCTTG AAGAAGAGAACAGGAGACTCCGTGATGGATTTGAAAAAGGAGTTAGGCCAGAGGAAGATGATTTGGTGAGGCTTCAACTT GAGGCACTTCTAGCTGAGAAATCAAGGCTTGCCAATGAGAATGCAAATCTTATAAGAGAAAACCAGTGTCTTCACCAGCT TGTTGAGTACCACCAACTTGCATCTCAAGATGATCTCTCTGAATCTTACGAGGATGTCATCCAGGGAATGCACTTAGACT TCTCATCTCCGCCGCCAACAATTGCCGCAGAAGAGACAAGGGATGAAGATGGTGATGATGAGACAAATAGAGAAGAACCA CAAACACCAAGTAAAAATATCTGCAAATCCTCTAATTCACTTGATGATGGAGAAGAAGAGTAA
Protein sequence (LotjaGi1g1v0727700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSLETPSSPPLLLNQDHSTTSVMGCSSPLLSPSSDKRFWSTLRTRVETILDDREHKISDPQHPSTYKSEQSNRLKEDS MLLMRGFDSVAHTLSLMSSNLDNALQGARELANPPTLTDIFHSKFDKAETKEEKQREGKSKQGVKRKIDHNDVVSEENVV DPQVGNGQKLQDGNFKKAKNLAVSMATKAASLARELKSIKSDLCFMQERCGLLEEENRRLRDGFEKGVRPEEDDLVRLQL EALLAEKSRLANENANLIRENQCLHQLVEYHQLASQDDLSESYEDVIQGMHLDFSSPPPTIAAEETRDEDGDDETNREEP QTPSKNICKSSNSLDDGEEE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 21 | 21 | - | – | |
PANTHER | 1 | 336 | 336 | 2.3E-137 | – | |
PANTHER | 1 | 336 | 336 | 2.3E-137 | – | |
MobiDBLite | 54 | 75 | 22 | - | – | |
MobiDBLite | 126 | 146 | 21 | - | – | |
Coils | 240 | 260 | 21 | - | – | |
MobiDBLite | 291 | 340 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0727700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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