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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0730800 |
| Transcript ID | LotjaGi1g1v0730800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Mitochondrial-processing peptidase subunit alpha; TAIR: AT1G77550.1 tubulin-tyrosine ligase; Swiss-Prot: sp|Q49Y59|MNMA_STAS1 tRNA-specific 2-thiouridylase MnmA; TrEMBL-Plants: tr|A0A072UCX8|A0A072UCX8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0730800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130264058..130264807) extracted from Lotus japonicus Gifu genome v1.2.
ACTTAACCCTTAATCTCGTGAGCTTAAACCCATTTGAGAATTGTGTCATACCCTGCATCAAACACTATCCCCCAATAACC TACACCTTCCTTCACCAATTCAAATTCTCCATCTTGCAAAAAAAAAAAGATAACTTTACTTTCCAAGCCATTTCCATGGG AAACAAACACTCATCATCAAGTTCAAAGGTACATGGCATGGCATCAAAGGTTGCTTCATCTGAACCACATCATATTCTCC AAAAGCAGGGGAAACACTCTGCCTCAGGGATTGTGGGTTTCGAAACAGAACAAGGCCATGGGACCAAAGTTTCTGCATTC AATGATGAATACATAGTTATAGCCAAATCCAACCAACATGGTCTTGGAATGCCAAAATGGAATGCTCCACTTGACAATGA TGACACTTTCAACGATTTCATTCAACGTTCCAAGTATAAAATCAGAAGCACAACCATGTCCAACAATGTTTGGGAGCAGA GCAACTCTGCACCTGCACCAGCTGCATCAGATGATGAGGTTAGTGAAGAAGAAAATGAAAGAGAGAAGTTTTCAAGATTT ATTCAGATTACTAAGAAAAAGTTGAGAACCACATCAAGCATTCGAAAGGACTAGGTGTTCTAATAAGGCCTTACCACCAG GGCCGGCATTTAAGCAAATACTTTCTTCTTTATTCCCCCTGTGTTTGAAGCATGATTTGGAATTTTCAGTTTAAGGAATA TATATGGATTCCATGGTTGTTAAAAGATTG
CDS sequence (LotjaGi1g1v0730800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAACAAACACTCATCATCAAGTTCAAAGGTACATGGCATGGCATCAAAGGTTGCTTCATCTGAACCACATCATAT TCTCCAAAAGCAGGGGAAACACTCTGCCTCAGGGATTGTGGGTTTCGAAACAGAACAAGGCCATGGGACCAAAGTTTCTG CATTCAATGATGAATACATAGTTATAGCCAAATCCAACCAACATGGTCTTGGAATGCCAAAATGGAATGCTCCACTTGAC AATGATGACACTTTCAACGATTTCATTCAACGTTCCAAGTATAAAATCAGAAGCACAACCATGTCCAACAATGTTTGGGA GCAGAGCAACTCTGCACCTGCACCAGCTGCATCAGATGATGAGGTTAGTGAAGAAGAAAATGAAAGAGAGAAGTTTTCAA GATTTATTCAGATTACTAAGAAAAAGTTGAGAACCACATCAAGCATTCGAAAGGACTAG
Protein sequence (LotjaGi1g1v0730800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNKHSSSSSKVHGMASKVASSEPHHILQKQGKHSASGIVGFETEQGHGTKVSAFNDEYIVIAKSNQHGLGMPKWNAPLD NDDTFNDFIQRSKYKIRSTTMSNNVWEQSNSAPAPAASDDEVSEEENEREKFSRFIQITKKKLRTTSSIRKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 151 | 151 | 4.4E-31 | – | |
| MobiDBLite | 1 | 16 | 16 | - | – | |
| PANTHER | 1 | 151 | 151 | 4.4E-31 | – | |
| MobiDBLite | 103 | 134 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0730800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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