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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0734900 |
| Transcript ID | LotjaGi1g1v0734900.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TLD domain-containing protein 1; TAIR: AT5G06260.1 TLD-domain containing nucleolar protein; Swiss-Prot: sp|Q8K0P3|TLDC1_MOUSE TLD domain-containing protein 1; TrEMBL-Plants: tr|A0A0B2P3M6|A0A0B2P3M6_GLYSO TLD domain-containing protein KIAA1609-like protein; Found in the gene: LotjaGi1g1v0734900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:130838613..130844109) extracted from Lotus japonicus Gifu genome v1.2.
ACATCACTGTCACAAAATTCGAATTTTCATCGATCAATCTTCAAATTTCTTTGCAGAGCTTTTACTCAAAAGGGACTACA AGACTTGAAGTCTCTGTTCAATTCTCTCGCATCTCAATCCCAAAGCAATGGAGAACACGTTTCTCCCTCTGTTTTTCAGG TAAAGTTTTTTTTTTTTTTTTTTTTTCATCTGCAAACCAATGATTAATTGTGCTACCTTCATAACCCAGTTGTTATTTTT CTCTAAAACCCTTAAAAATTCAATTTTTTTTCTTCTTGTTTTTAATTTTTGGTTATAGTCATATTTTAGACTCAATGGTC CTGTTGGGGAGAGGATGTTTGATTTAGTTACTCAGGAGCGTAAGGATCAAAGGTTAACCTTTGAAGACCTCGTTGTTGCT AAAGTGAGTTTGTTTTTTTCTTTTCATTGTAAATTGCAATCATCATTTTTGTCCCAAAATTAGGACTTGTTTACATATGG GTTTAACTTTTCATGTTGTAGGCTACTTATGAGAAAGGAACGAAAGACGAAATTGACGAATTCATCTTTCGCTTATTAGA TGTATCTGGTGATAATTTTGTGGGGAGGTAGAGTTCTATCCCTTTTGAAAGTTTAATGCAGGTCTGATCATACACACGCC CCCATTTTGCGCAAAATAATTAAGTAATGAAGCTAGTTTACTGATCTTTTATGCATTCATTTTTTGTTATCTGTGAAATG AACTTTAGTCTCTTTATATATCTAGATATCTCTCTGCCTGTGGAATTATTCTATAGCTAGTTTCTCAAGCAGCCTTGGAT TTAAACAATTTTATGGAAGTTTAATTGGCTGAACTGGTTTAGTTCTAAATACTTAAGAGCGGTGCTTCTCTAGAGATAGA GTTGTCAGCCAGATTGATGTTCTTTTTCTAACAAGGGATAAAAAAAATTAAAATATTGGAATTTTTATTTTTTACATATA GGTTTATCCAGTTATATTACTGTGTTTAAAATTATTTTGATTTCCGATCTCCCTTTTGTGTTTATGTTGATGTTGATGCA TGCTACATTGGAGATGCAGGTCTGATTTGGAATCTGTTATGATTGCCATATTCAATGATATATTATGCATAAATAATTCT GAAGAAAGATCAAGTTCAAATCAGGATGTTGTCAACATATTTCTGAATGCTGCAAATTTCTCCGTGCATGAAGGGTGTAC TGAGGAGACTATGTCTTTTGAAGATTTCAGAAATTGGTGTACTCATCTCCCGTCTGTGAGGAAGCTTCTTGGTAGCTTAC TTTTGCCACCTGATTCAGGTATTGGTGCAATTTATTTACCCCTTTTTTGTTATTGACTTTTGTTTATCTGAAATACGACA TAACTAGATTAAGATTAGGATCTTGGAGTTATGAGCAAATGAACCACAGATTTGGTTGAATTTGAACTTTTCCTATTTAA GTTTCATGCTTATCAAATTTCGCCTTTGATTATGCTTTTTTCTCTGCCTAAATTTTACTCAGTCAATCCCAAGCTTGGAT GCAAGAGGTAATTGTGCTACACATTCAACATCCAATGTAAACTCTTCTATAGCATGAGTCAATCATGCGGCAATGCTAAT GCTAGGTTGTTACGTTTAAGCATGTTTGTATGACTTGAGTTTAATGTTGAATGATCTATTGCTATTAGCTACTATAATAG CACTGGGATGTAGTGTTAAATAATACGAATTTCTTGAATGAATCATGAGAAAATGATTTGATATGGCACTTAAAATATTG GAATACTCATAGGTTTATGCATTGAAGTTGTTGACACAATGATTAGAAAGAGTGGGTATTATTCAAGTGGGATGACAAAA ATGCTAAGGAATTAGACTCTTTTGATTTAAACTCTGGTCTACAGGCATAGTAAGAAAAAGAAATAGGGTAGGTATAATTG TGGACTAAAACTTGACAGAATATTGTGGTCAATATTAGAAGGAGAAACCATCAGAAAAAAAGTCTTACTAAAATGGTTTT ACTGAAATTTTAGTAATTCATAGAGCCCTATGGGATTGATTCTTTCATGTAACTAGCCTCATCTAGTAGGATAAGACTTG GTTGTTTTGTTGTTATTGTAGTAGTTGTTGTAGTAGGCTTTTGACAAATCAATCAATAGGTTCTAGCTTTTGTGGATTTC TCATGAGTGACAAAAATAATTCCTGTGATTTATTTGACCTAATTGTTCTTCTAATATTTGACCTATGTAAAATGAAAATA TTTTTGGCTAAAATAGTGGCCATTCTTCTAATAGCATGCATTATTGAGTAATATTAAATGTAAACAGCAATTGATGGTGA TTATATGCACAATATGCACTAGGCACTGGCTACTTGACTAATAAAACTCAGTGACTTTAGAACGATTCATTGCAGGATAC TGATCTTGTAAATATTCTGGCAACCAAATACACACACATTTTAAATTGTTAATTTATATTGTTTCTTCTTCTTCTTGGAT AGAACTCCTGTATGTTTCTGTTAGACTTACGCAGACACGCAATTTGATTACACTAAATGCTTCACTTTTCTACTTTATTT GTTTTAGTACGATCTTTTAGATAAAAATCTACATAAATAGTTTTGATGAAAATTCAGCGTAAATGGTTGGCATGTTTTCT TATTCCTTTGTTTTTGCTAATTTTTCCCTAGGACGACCAGGTTCTCAAATTCCTAAACTATTGACCTCAAAAGGTGTTGA TTCGAACATTACACTTTTAAGAGAGGAATATGCTTGGCACATAGGAGGAGCACTTTCTCAGCAAGAGTTGGAAGATTGGA AGATTTTGTATCATAGTGCTGTTAATGGTCTTAGTTTTAATACATTCTTGGGCAACATTTCGTAAGTACTTTTTCTTGCA TTCGAATTGAAGCATTTTTTTTTGTCTCCGCTGGTTAGAGGTTTATCAGGAAATTATGTAAAAGAAGAAATAAGGATCAG TCAGTAGTTAAGGATATTATTATACTTGGGAGAAAATTATTCTGGAACAGAATTATTAGGAGATATCATTAAATATGGTA ATTAGAAAAAGAATCATTACAGAGCTATTAGAAGTAGATATTGTGAAATATAGTAATTAGGAAGGAATCTTCAATAATGA AATTGGGATGATTAGGAATAGGACGAAATAGAAGAATTAGGAAAATAAGTATGTTATGAATAATAGAAGGGAAGAGAATA TGAACTGTGGATGTATTTATGAGAAAATTGGGGCCTTAAAGCAAGGAGGTGTGAAGTGTGAACCCTTGAAGATTTGTGGT TCTGTAAACAGGGGAGATTATCCCTATTCTTTCTAATAAAAGCATCAGGTTCTTAACAACTGTAAGGGAGTTCTTCATGA TGAATAGCCACCTTGCAAGAAACAAGAATGGATAATTTTGAAGAAAAGGATGGCTAACTTGCTGTGAAAATTTCAGGCTG GACAAAGCCCAGGAAATTGGTCAAGCGAAAATGTCATGCTTGTTATATGTCTGCTAGTTAAAGCTTTATAAGAAAGCATA TAAAAGGAGAAATAATGATGAATCAGTATTTAAAGATATTATTAAATAGAGAAATTAATTAGGAGAGAATAATTCTAGAA CAAAATTATTAGAAGTAGATGTTGAATATAGTTATTAGAAATGAATCATTATATAGTTATTAGAAATAGATATTGTCAAA TATAGTAGTTAGGAAAGAGAAGTTCTATAATTGAATTAGGATTATTAGGACTATAGCTAAATATGAGAATTAGCAAAATA TAGTATGTTACGAAGAATAGAAAGGAAGAGAGTGAAACTATGGATGCTTAAGACAATGAGTTGCAGACCCTTGAAGACCG CAAAGCTGTAAACAAGGAAATTTTTCCATATTATTCCTAATAAAATATCAGGTCCATAGCAGCATCCTACTCCTTTTAAT TATTATAGGAAACTTCACTCATGCAAGAAGATGAGAATAGCAGAAAGAGAAATCAGCCCTACAAGAGATTGTGAATGGCT CTGGACCTTTTAATTAATCAATGAGATTAAATGTACGAGGAAACAGTGTGCATGACATGGATGTCACCATTGGTTGTTAC TATGAGTGAGATGACTTGCAGGACAGAGACATTCTTTTTCACTTGATCAATATCTCCAGTATATATAAGCATTGAATGTA CACTTGAGATATCTAAAACTTAAGAAGATTTGTTATTACACATGGCTTCAATTGGATTTTTTGCTTATCTTTAGGTCTGC AAGCCAATAGCTATGCATACAATTATGTTTCCTTTTATTTAAGAAATGTTTATTTTAGTTTCTGGGCTACTCCAACTAAA CTCTATGTAGGATTGAAAATTTGGAATGCATACTGACATAACTGTTAATTCTAACTGCAGAAGTCATGAAGGTCCGACCG TATTAATTATCAAGGACACAGAGGGTTATATATATGGAGGATATGCTTCTCAACCATGGGAGCGACATGCTGAGTTTTAC GGAGACATGAAATCTTACCTTTTTCAACTATATCCAAAGGCATCTATATTCAGGCCTACCGGAGCAAACAATAATCTACA ATGGGTAACTTTCTACTTGTTTCTAAGGTTCTAATAGCATGTTTGATTCAACTTCTCTATCTTTCAGAATCATTTCTGAC ACTCAGAAGCTTCTCCTCAGAATTGTTTTTGACTTTAGAATCAATTAGAGAAAGATTTCCAAACATGCTATAAATTGCTG GCCTTTATCATTCCTTTTTTGTATGCTGAACTGTGATCATCAAACTCTGCTCTTATTTTTTTATCAGTATAACAAAATAT ATTAACATTGATGCTGCAATCAGAACCATATATAATATGCAAAAAAAAGAACTATGGCACGTCTTTTATGTACTATTAAA TGAAGCTTCCCTATCATTTTCAACTGTATTTTTTTGACGTTGGGGCATGAACGAATTGGAAACTAGGCACGCATGCCATT GTTCTTCTTTGGCTAAGCATGTTTTACTTGCAAGCGTGAGTAACATGATGTTGCTATAAGATGGTTATCACTTCCAATTG TAAGGAAAATTTATAAAGGATTGCTTATATTTAAAAAGGAAAAATTTATAGGATTAGTCATCTCACACTACACTATGTGT TGGATTTTATTCAGTTGTTGGAGATTTATCTAATTGCTACTCTACATTTATAGAATTTTCATTTGAATGTGTAGTGCGCG GCCAACTTCAGTTCAGAGGACATTCCAAATGGCATTGGTTTTGGGGGACGAGTGCATCATTTTGGTTTGTTTATCTCAGC AAACTTCGATCAAGGACACACATTTTCATGTTCTACATTTGGTAGCCCTTGCCTCACCAAGACAAACCGTATATTGCCAG AAGTAATAGAGTGCTGGGGAGTGACTCAAGGTGCGGTACAAGGCAAGAATGATGCGGTGAAGGGCACTATACTTGAGAGG TTTAAGGAAGATCGAAACATGCTCAATATGGTAGGCCTAGCAAATTCCAGCGAGTAA
CDS sequence (LotjaGi1g1v0734900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGATTTAGTTACTCAGGAGCGTAAGGATCAAAGGTTAACCTTTGAAGACCTCGTTGTTGCTAAAGCTACTTATGA GAAAGGAACGAAAGACGAAATTGACGAATTCATCTTTCGCTTATTAGATGTATCTGGTGATAATTTTGTGGGGAGATGCA GGTCTGATTTGGAATCTGTTATGATTGCCATATTCAATGATATATTATGCATAAATAATTCTGAAGAAAGATCAAGTTCA AATCAGGATGTTGTCAACATATTTCTGAATGCTGCAAATTTCTCCGTGCATGAAGGGTGTACTGAGGAGACTATGTCTTT TGAAGATTTCAGAAATTGGTGTACTCATCTCCCGTCTGTGAGGAAGCTTCTTGGTAGCTTACTTTTGCCACCTGATTCAG GACGACCAGGTTCTCAAATTCCTAAACTATTGACCTCAAAAGGTGTTGATTCGAACATTACACTTTTAAGAGAGGAATAT GCTTGGCACATAGGAGGAGCACTTTCTCAGCAAGAGTTGGAAGATTGGAAGATTTTGTATCATAGTGCTGTTAATGGTCT TAGTTTTAATACATTCTTGGGCAACATTTCAAGTCATGAAGGTCCGACCGTATTAATTATCAAGGACACAGAGGGTTATA TATATGGAGGATATGCTTCTCAACCATGGGAGCGACATGCTGAGTTTTACGGAGACATGAAATCTTACCTTTTTCAACTA TATCCAAAGGCATCTATATTCAGGCCTACCGGAGCAAACAATAATCTACAATGGTGCGCGGCCAACTTCAGTTCAGAGGA CATTCCAAATGGCATTGGTTTTGGGGGACGAGTGCATCATTTTGGTTTGTTTATCTCAGCAAACTTCGATCAAGGACACA CATTTTCATGTTCTACATTTGGTAGCCCTTGCCTCACCAAGACAAACCGTATATTGCCAGAAGTAATAGAGTGCTGGGGA GTGACTCAAGGTGCGGTACAAGGCAAGAATGATGCGGTGAAGGGCACTATACTTGAGAGGTTTAAGGAAGATCGAAACAT GCTCAATATGGTAGGCCTAGCAAATTCCAGCGAGTAA
Protein sequence (LotjaGi1g1v0734900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFDLVTQERKDQRLTFEDLVVAKATYEKGTKDEIDEFIFRLLDVSGDNFVGRCRSDLESVMIAIFNDILCINNSEERSSS NQDVVNIFLNAANFSVHEGCTEETMSFEDFRNWCTHLPSVRKLLGSLLLPPDSGRPGSQIPKLLTSKGVDSNITLLREEY AWHIGGALSQQELEDWKILYHSAVNGLSFNTFLGNISSHEGPTVLIIKDTEGYIYGGYASQPWERHAEFYGDMKSYLFQL YPKASIFRPTGANNNLQWCAANFSSEDIPNGIGFGGRVHHFGLFISANFDQGHTFSCSTFGSPCLTKTNRILPEVIECWG VTQGAVQGKNDAVKGTILERFKEDRNMLNMVGLANSSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 1.3E-190 | – | |
| PANTHER | 1 | 349 | 349 | 1.3E-190 | – | |
| Gene3D | 1 | 124 | 124 | 4.8E-7 | – | |
| SUPERFAMILY | 9 | 131 | 123 | 6.97E-7 | ||
| SMART | 153 | 322 | 170 | 1.2E-53 | ||
| ProSiteProfiles | 154 | 322 | 169 | 25.378 | – | |
| Pfam | 179 | 321 | 143 | 1.9E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0734900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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