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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0738100 |
| Transcript ID | LotjaGi1g1v0738100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein; TAIR: AT3G52380.1 chloroplast RNA-binding protein 33; Swiss-Prot: sp|Q39061|CP33_ARATH RNA-binding protein CP33, chloroplastic; TrEMBL-Plants: tr|A0A151SQC6|A0A151SQC6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0738100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131248031..131250403) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCCAGAGCTCGGAAGCAAACCTTATCCTTCTCAACTGTCAAATTGAAAGCCTCAGCTCAACAATGGATTCATATCT CCCCTTCCACACCCAACTCATTCCTCAACTCTGAAACCATCAACATTCTCTCTTCTTTCACTCCATGGCTTCTACAACCT CTGTTTCCTCTTCTATCTGCAACAGAATCTACAACCTCTCCTTCAAACATTCTTCCCTTGCACTCACCTGCAACTTCTCT CAAAGACCCATATCTCAAAAAGCCTTCAATCTCAACCTCAAGTTCCAAAGTTTTATTCTTTCCCCACTTTCACTTCACCG TCTTCACCCACCATCTGCTTCCACTGATGAATTTGAAGTGGCTCAAGACAGCACAGATTCCCGACAAGACAACCCAGAAC CAGAACCAGAAACAGAAACCTCTGATAAACCACAACAAGAGGAAGAGCAGAAGGTATCAACTTCCAGTGATGATAGGAGG CTCTATGTTGGAAACTTGCCATATTCAATGACTTCTTCGCAATTGACTGAGATCTTTGTAGAAGCTGGCACTGTGGTGTC TGTTGAGGTTTCTTCTTCACAACCCCTTTTCACTTTTTGTGCTTTTCCTGTTTTGGTGATTAAATCAATATTTTTGTGTG TGGATATTATAGCAATCTAGTAATGGTTTGAGCATGTTCTGTTTGATTGAATTATGTAGGTAATGTACGATCGAGTCACG GATAGGAGCAGAGGATTTGCATTTGTTACAATGGGGAGTGTTGATGATGCTAAAGAAGCAATTCGAATGTTTGATGGCTC TGTAAGTCTCTTACATTAGCTGGTACTTAGTTTGATTGGCTATGCCATGTTTTCTGCTTTTCTATTACTGAGTTATCCAA GGATTTTCAATAGTATTGTGAATGAAAACAATAGGGTTCAAATAGTTTTTCCGGAAATGGATTCCCTGCGGTTACGCAGT CGGGAGTCCCTACATTCATGTAGTCACGCAATTTGAGTTATCAGTAGGCTCAAATTTTAAATCTATATCTACCATCAAAT CTTGTTGAAATATATGAACCAACCTGATTAGATGACTGATTGCGTGCTGCGTAAATGTGGTGTATCCCTGACTGCATGAA ACCTGAATTCAGTTTTGCCAAGGTTCATCTGCTACAAATTGAATTAGTTGGGGCTACTTTCAGACCAAAAAAGGATTATA AAATAGTCCTAAGATTTTACATTATGAACGCCGTTGCAGTCGCATTACGATCAAATGTGCCTGATGTGTCTACAATGAGC ATTCTAATCTGCATTATCATCACAGATTATAGGTAGCTAGCTATATGTAAAGTTTCAATGCTAATGTTAATGGTTGTGAT GATGTTCAGCAAGTTGGTGGTAGGATTGTCAGGGTGAACTTCCCGGAGGTGCCCAAAGGAGGTGAAAGGTTAGTAATGGG GCCAAAAATACGGAACAACAACAGAGACTTTGTGGACAGCTCTCACAAGATATATGCTGGAAACCTTGGCTGGAGAGTGA GCTCTCAGGATCTTAAAGATGTTTTCGCTGAGCAGCCTGGCTTAGTCAGTGCCAAGGTCATCTATGAGAGAGACAGTGGA AGGTCTCGAGGTTTTGGGTTTGTCACTTTCGAAACTGCTCAAGATGTAGAAGCTGCTTTGAAAACTATGAATGGTGTGGT AAGAACAATTTCATAGACTAGTTATGCAACGTCAAGTTCTTCTTATGATATCTCATTATGATTATATAACCACATTCCTT CTTGCAAATGTAATGTTCTCAGGAGGTTCAAGGTCGGGAATTGCGATTGAACTTGGCTGCTGTAAAGGCACCTTCATCTC CTTCAGTAACTGAGGAAAATGAAGGAAGTAGTGTTGATACCTCTGAATTGGTGTCTAGTGCCAGCACATGAAGAAATATT TTTGTAAAAATTTTGCCCGCAAAATGCACCTATATCTACTTGCCCTTCTCTTCATCTTGTCACATTTCCTGGCAATTACT AGCCACATTGGTACACACTAACTAGACCTTCAGGCAGTTGTGAGATGTATCTATCATTGAACATGTATTAAAGACCTATA AGGGGTTATATAATTTGTAATTATAAAACAGAGCTTTTAGAGTTTTTCGGACTAATAATTCATTCAAGCGAAGATTATTT TGGTGCTAATCTTCTCCTAAGAGAAACCAATACAAACTTTAGAAAGGGACCTTGCTTGTAATCTTCTGATCATAAATTTG GATAACTAGTCCAACCAAGTTAACCAAATGAGACACCTTAAGAAGGATTTTGCAACGAAATCACGACTTAGGATCAATGT CCGTCATTATCAACTATAGGTTCTATAACACTAGTTAGACTCTTTCTGAAAGA
CDS sequence (LotjaGi1g1v0738100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTACAACCTCTGTTTCCTCTTCTATCTGCAACAGAATCTACAACCTCTCCTTCAAACATTCTTCCCTTGCACT CACCTGCAACTTCTCTCAAAGACCCATATCTCAAAAAGCCTTCAATCTCAACCTCAAGTTCCAAAGTTTTATTCTTTCCC CACTTTCACTTCACCGTCTTCACCCACCATCTGCTTCCACTGATGAATTTGAAGTGGCTCAAGACAGCACAGATTCCCGA CAAGACAACCCAGAACCAGAACCAGAAACAGAAACCTCTGATAAACCACAACAAGAGGAAGAGCAGAAGGTATCAACTTC CAGTGATGATAGGAGGCTCTATGTTGGAAACTTGCCATATTCAATGACTTCTTCGCAATTGACTGAGATCTTTGTAGAAG CTGGCACTGTGGTGTCTGTTGAGGTAATGTACGATCGAGTCACGGATAGGAGCAGAGGATTTGCATTTGTTACAATGGGG AGTGTTGATGATGCTAAAGAAGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGATTGTCAGGGTGAACTTCCC GGAGGTGCCCAAAGGAGGTGAAAGGTTAGTAATGGGGCCAAAAATACGGAACAACAACAGAGACTTTGTGGACAGCTCTC ACAAGATATATGCTGGAAACCTTGGCTGGAGAGTGAGCTCTCAGGATCTTAAAGATGTTTTCGCTGAGCAGCCTGGCTTA GTCAGTGCCAAGGTCATCTATGAGAGAGACAGTGGAAGGTCTCGAGGTTTTGGGTTTGTCACTTTCGAAACTGCTCAAGA TGTAGAAGCTGCTTTGAAAACTATGAATGGTGTGGAGGTTCAAGGTCGGGAATTGCGATTGAACTTGGCTGCTGTAAAGG CACCTTCATCTCCTTCAGTAACTGAGGAAAATGAAGGAAGTAGTGTTGATACCTCTGAATTGGTGTCTAGTGCCAGCACA TGA
Protein sequence (LotjaGi1g1v0738100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTTSVSSSICNRIYNLSFKHSSLALTCNFSQRPISQKAFNLNLKFQSFILSPLSLHRLHPPSASTDEFEVAQDSTDSR QDNPEPEPETETSDKPQQEEEQKVSTSSDDRRLYVGNLPYSMTSSQLTEIFVEAGTVVSVEVMYDRVTDRSRGFAFVTMG SVDDAKEAIRMFDGSQVGGRIVRVNFPEVPKGGERLVMGPKIRNNNRDFVDSSHKIYAGNLGWRVSSQDLKDVFAEQPGL VSAKVIYERDSGRSRGFGFVTFETAQDVEAALKTMNGVEVQGRELRLNLAAVKAPSSPSVTEENEGSSVDTSELVSSAST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 62 | 195 | 134 | 3.2E-31 | ||
| MobiDBLite | 63 | 110 | 48 | - | – | |
| MobiDBLite | 73 | 108 | 36 | - | – | |
| PANTHER | 95 | 298 | 204 | 1.6E-88 | – | |
| PANTHER | 95 | 298 | 204 | 1.6E-88 | – | |
| SUPERFAMILY | 107 | 187 | 81 | 1.48E-28 | ||
| ProSiteProfiles | 111 | 189 | 79 | 19.434 | ||
| SMART | 112 | 185 | 74 | 5.5E-28 | ||
| CDD | 112 | 188 | 77 | 7.7197E-34 | – | |
| Pfam | 113 | 182 | 70 | 9.0E-21 | ||
| Gene3D | 198 | 301 | 104 | 1.8E-24 | ||
| SUPERFAMILY | 210 | 296 | 87 | 1.29E-25 | ||
| ProSiteProfiles | 214 | 292 | 79 | 18.172 | ||
| SMART | 215 | 288 | 74 | 2.7E-25 | ||
| Pfam | 216 | 286 | 71 | 3.4E-17 | ||
| MobiDBLite | 293 | 320 | 28 | - | – | |
| MobiDBLite | 294 | 320 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi1g1v0738100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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