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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0739500 |
| Transcript ID | LotjaGi1g1v0739500.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | polyketide cyclase/dehydrase/lipid transport superfamily protein; TAIR: AT5G06440.2 polyketide cyclase/dehydrase/lipid transport superfamily protein; Swiss-Prot: sp|B4RUW0|MSRB_ALTMD Peptide methionine sulfoxide reductase MsrB; TrEMBL-Plants: tr|K7KG54|K7KG54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0739500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131352414..131358332) extracted from Lotus japonicus Gifu genome v1.2.
CTGACGCTTTCAAACTTTGCAGTCCCATGCTTAAAAGTCAAATTTTTTTACCCAAAAGGATCACATTTTTATATTAATCA AACACTACCAATAACAATAACAATTAAAAATTAACAATAGCTTGGTTTGGTTGTTCTTCAATATTGCTTTGGGGTTCTAC TACATCAGGTGGCTGTGTCCCCTCTTTGTAGACTGAGATCTGCATTCTTGGGTATGTGGAAAATTTTCAGCTTTTTCTTA TTGTTAACACCCCAATTGAGCTTCTGAAATTTTCATGTAAGTGGGATTTTGGTGAAGTTTATAGCTTTAATTGAATTGGA TATATCACATCATCATCACATCAGTGCCTCCGTTTTAGTTATGGATTGAATTTCTTCATCTTCCTTAAGTTTGGTTTTAA TTTTGGTTTGTTCACGTGGTCTCATTAAATTCTGGTATGTGTCTTACATGGGTTGGGGCTTAGCTGTGGTAGTTGTCCTT CCCTGAACAGATTCTGTAAAACAAGTGGTTAAGAAATTTCAAGATTTTTTTTTTTGTAATTTCATTTATTGCAGCTCAGA AGCTTCAAGTTGGTGTCTTGCAGATTTTGTACTGGCCATTTAATGATGACTTTCTAGGCATTTCTTATTTTAGTTAACAA TAGTTGGGCCACAGTGGAGAGAAAAGTTTTCTGGCAAATAACGTGACAAGTGCGATTTTTCTTCTGCTTTGTACACTTAC AATTCAGGTGGTAAATTCAGTGAAAAGTGGTACTTTTCTTCTGCTTTGTACGCTTACAATTCAGGTATCAATTGTGCTTG GTAGTCTTGTTTTTACCTAGAGTGGATGATTTATATGATTATGGAGAATATTTGCAGTACTTTCTGATGGAGGGCTTGTT CTTCTTTCCTTAGAGATACATTGATGGCGAAAAAGAGACATATTGTGCAGTATAGGGAGAGGTTGGACAGGACCCTTGCT TCCCCTGATCTCACAAATGGCGAGATGCTCAAAACGCTTGTCAAAAGTCAACTACTACGTTCTTCACAATTTGAAATTGA AGGTAATTAGATTAATAGGTCCCTAATTTGCTTTGATCTCACTTAAGCTGAGATGGTACTAGCTAACTGGAATTATTATT TTAGGTACTTCAGTTTGTATTTTTTTTTTAAGTTTTATGTTTGAATTTGTAGGTTATGAAGATAAATTTGTAGAAACCAA AACTGCAGAGATAACAAACTTTCTTGATATGATAAGTGCTTCTGTAGATAATAGTGGAGGATCTAGTATATCACACACTG ATTGGAAGGTATGATATCTACTTTGGCTGTGTCTGGATATATGTTTTTGCGCTGATATTTGCACGCACTTTAACATAAAC AGTGAACATAACTCTTATGAAAGTACGCTCACATTGCATTCAACTGTATCCAAACATTCAGCCATGTCATATTTCTTGAC ATTTTATTGCCCTATGTAGATTATCCTCCACTGATTTGGATCTTAAACTTTTTGTTTTGCTTTATTTATCCAATTATTGA CTTCCTTTAAGAAAAATATGTGAGTTTACTTTAGCTGATTGACCTCTTGCTTCAGTGGTTTATCCTTTTTTTAGAATCCG ATTGAGCTAATGCAATCTTGTGTAACATTTTGTATACTGAATTCTGATCATGCTTTCTGTAATAGATACATGACTTTTAC TATCAAATTCTTGAGGAATTTTGATAATTTTACTTCTTTCAACAGTTAAAACAGGATAATGAAGATTACCGTGTTATGTA TCGTGAAGGACCAGAGGGAACTCCCTTTCATACATTGATGGTTGAAGGCTATATAGATGGGCCTGTTGATGTTTGTGAGT CACGTTAGATCAGCCAATTTTTTTTGGCATCACCTTTATAAGTTTAACAACAAAGGCCATATTGTTATGTTTAACATGTG AAGTTTTAATGAGTTATTTTCTTCATTACAGGTTTATGCCTCTCATGGGAGGCACCCCTTTACAAGAAATGGTGAGAATC ACAGTGCAAAATGTGCTTTCAATTTTCTGTATATTTGTCTCTTAATGACACTGTACACTAGTGTCATTTTTTCACACATG AATTTCTATGTATGAATGGAGTTGCAACAATTAATGAAAATTGCAGTTACAAGATATGTCTTCTGAACCATCTGACATTA ATTTTGTTATGGGAAGGTGCTGCAAGTTTTTGTATAGCATTTAAATTATTTAGAATCTATGTTGGGGGATCGACATAAAA ATCTCATTGACAATTTTAGTATGTGTTTCATATTAACTCAAGTGATTGCTAACGTTTGTTTGGACATGCATCAAAGAGTA TCCAGACATAGCCTTAGTTGATAGTTTTTTTCACAAATTTCATTTTTCAGGTGGCCTCAGTTTACTGTTCCGCCTTTCAA AGTTTTAGCAGCTGATTGTTTGCAAAAGGTCCAGATTGGGGAACAGATCTCACTAGTAAGGTTTGTTGCCAGCATCAATT ACAGAATTTCTCTTTTAGTGTGACTCACCATGCTAAAAGCCTTCACTGTTTATAGCATGTTTGGATGAGCTTCTGTTTCC TCAGAATCAATTCTGACATCCAGAAGCTACTCACAGAAGTTTCTTCCCAAAATTGATTTTTACTTTAGAATCAATTGTAG AAGTATTTTCAAACATAACTTAGTACTCATATTGTTTCAAATTTTGGAAGAAAGGATGAAGGTTCCGTGGCCGCTGTCAA AGAGGGAGGCTATAGTGCACTATTATCTGGTTGAGTACTTTCAAGAAGACTTGACAATTGTTCTCATAAAATCGGTAGTC ACTTGGATCCTTTTCTCTTCCTTTTCTTCTTTTTGTAAAGAGAGCTAGTTATGATCTTCAGGAAATTTGTTTGTTTTGCT TTCAGGTCTCTGAGTCAGAGAGCATGGATGGGGCCATTGATGGTATCAACAGAGATGCAATTCCTGAAGCAAAGGATGTT GTTAGAATTGACTTTGTGGGAGGTTATGTTTTGCAAAAGGTGACCTCAGAAAGAAGTTACTTTCGGTGAGTTTTAAGTGA ATACTGTAACATTAGAAGTATATTTTTAGTAATGGGCTAATTTAGAGGGTTGTGTTGTCCTCTACTTGTTAATCACTAAA ATGTAAATTTCCAAACTCATTATTATCTATCCTGACATGACATTTATTAGACTAAGCAATCACTTATTGGTCAATTATGA GAGTGGACAATCCTTGGGAGTGCATGGAAAAGTTGTCCTTTAAGTTACTTAAAGGGGAAAATTGTCACCTGTTATAGACC ATAAAACCCCATAGATCTGCTTAATTTTAAGAGGTGAAAAAGTTTGAAGAAGTTCCTGTATGTGACTGGATTTCATGTTG GGATATGGTTTTATTTGCGTATCAGATCCCGGTGAAGCTGGAATTTTTCTCATAGATTTTGCAAATTAACTGAGTTACCT AAAGATAATATTTTTGTACTATGGGAAATCATGGCGAGTATTATATTGTCTTTATGATAGAGAGGGATCTCCATCTTTAA ACTAAAAATAACTTCACTGATATTTGGTGCTCCAGACTTTTGGCTTTGCTAATGTTTCTATGAACAGTTAATCATACCTG GTTTAGTTGTTCTATCTACTTTACTTGTTTCCATTGATAACTTGTCTTATGTTTTCATTGTAAGTTACTCATTCATTTCT TAATTGATACTAAAAGAAATATGTAATTGAACTAGCTTTAGTTTATAGTCTAATTATGTGGCTTGGCTTCCAAATGTGGT GAAAAATGAAGATACCAAACAGAAAAGGGATTTTGAATTTTGATTAGCTGCCTATAAATTTGAAAAAAATTGTAGGACAA TGGCAAATTTGGATATAAAGCTGGACTTTGTACCTCCAACCCTTATAAATTTCATTTCAAGGCAACTCATCGGAAGCGGT TTCAGACTTTATCAGAAGGTTGTAGATTCTTTTCAGATATACTTTGATTAGGCACCCATCCAATATTTAAAACATCCTTT CATGGATATTTTGTAATTTCTTATATTGCCTTTTGATGCTGACCAACCCCTGAAATTGTTATAGGCTGTGTCCTCTATGA TGAACAATGATAAAGAAATCATCAAGACCTTGGGTGACTCATTGTATGTTGGAATTCGAGAAGCTCTTTACAACACTAGT GGATCAAATGCTATGGATGGGGAAGAGCTTAACATAGTTTCTAGCATTCTTCCTGCTGAAGAACATGCTCAAAGCAAGCA AGATGGGACAAAACATGTATCTTGGGAGGATAGAGGCAACCAATCTACGAGTAATTGCAATGGTGAGATTTTAGAGGCAG GTAATGGAGAGATTGTAGAAGAAGATAGTGAAGAGATTGTACAAATTGCGGAGGATGTCAACAAAGTATTGAAGGGCAAG AGGAATGATAAGATTGTAGATGCAGATAATGAAGAGATTTCAGAAGCAGAGAATGAAGAGATTGTACAGATTGAAGAGGT TGTCAAGAAAGTACATGACATCACCATTGAGGAAGATAGTGCCATGAATTTTCTGAAGAGAAAGAAGAATGTAAGCATAA ACTCAGATGTAAAAAAGGCTCTAGAAACTCTAGAGAAGGCCATTTCAATGGTTCGCGAATATGGTTTTCATCCTCGCAGG CCTTCTTTTAGATTCGGGAATGAAGAGAGAAAAGATAGCACAGTTGAATCATATACTGCAAAACCTTCTCAGCTATCTTC AAAGGTTAGTGTTGAAGTATCAAGCAGCAATACACTGAATGAAACTTTAGAAGAACCTGTGACTAACTCTGAAATCCAAA ACATCAGGTGATTATGTTACCCTTAACAAAAGTTCTTTTTGTGTGATTTTGTATCCTTCCATATGGTGTGTTTGGAAATA TAAGCCAACTAGTAAAGAATGCAGTTTAATTTTTAATTATGAAATATATATTTAACTGATGCTCTTGTTTCTTTTTTTAT CTTTTAGGCACACAGGAACAAATCCTAATTTAAAGGAAGTTAACCATAACAAGGTTGTACCAGCTGCTTCACCAGAGCAG AATCTCCAAAGACTATTTGAAGAAAGCCGGGCTGATTCATTTTCTATGAAAAATGAGGCAACACTGAACCAGACAACAAG TGGTAGCAACCAATTAGACATTGATGCAATCCAAGATATGTCTTTAGATGACAAAAAAAAGTCAAGCAGGAAGAAAAATT ATATATACTGTTGTTTTCTACGTTAGGCCAGTAACAGAAGAACATTATGTATTTTGATGCCTTAAAGAGTTAATTTGATG TTTTAGAGCAATGTAAGTATGTGAAGGAGGTGTTAAGGGGTTATAGGTATAAGTATGGGAAATTTTGAAATAAAAAAAAT AAACAAGAACAATTAAATTTCCATTATTTATAAATTTTGGTTCCTCTTCTCTATCTTTCAAGCCCTCTCACTTTTGGATA GGAAGGAAGGATGTTGCCCCTTTATTTGTCCCTTTCTCCTCTCTAAATACTTGACCTAAGTGAAGTGTTCTTCTAGAAAT GAGATTGTTCGGTTCTCCTTGTCTCCGGTGGTGGTGTGTGGCCTTGGTTGGCTGAGCTAGTGCGACGGACCTATGTTAAC ACAACGGAGGTGTACTTGCAGACGACACTCCGACGCCCAAGTCAATGTGAGAGCAAAGAGAGAATCTCAAAGTCAAAGTC TATGAAGAACTCAAAGTATAGCACTATGAGCTAAAGTTATGTAAATGAATAATTACACCTGTATTTATAGGCTTGGAGTC CATCATAACTATATCTTTGCAAGTTCTAAGGAAGCCTGCCTAAGGTCTTTCTGAGAGCAAATAACATTGTAATTGTAAAT ATTGCTATGAACTTGAAAAAATTAACCCCTTTGGAATTTACAAATAACATTTGTAATATAAATTTTCATACTTTAATTT
CDS sequence (LotjaGi1g1v0739500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAAAGAGACATATTGTGCAGTATAGGGAGAGGTTGGACAGGACCCTTGCTTCCCCTGATCTCACAAATGGCGA GATGCTCAAAACGCTTGTCAAAAGTCAACTACTACGTTCTTCACAATTTGAAATTGAAGGTTATGAAGATAAATTTGTAG AAACCAAAACTGCAGAGATAACAAACTTTCTTGATATGATAAGTGCTTCTGTAGATAATAGTGGAGGATCTAGTATATCA CACACTGATTGGAAGTTAAAACAGGATAATGAAGATTACCGTGTTATGTATCGTGAAGGACCAGAGGGAACTCCCTTTCA TACATTGATGGTTGAAGGCTATATAGATGGGCCTGTTGATGTTTGTTTATGCCTCTCATGGGAGGCACCCCTTTACAAGA AATGGTGGCCTCAGTTTACTGTTCCGCCTTTCAAAGTTTTAGCAGCTGATTGTTTGCAAAAGGTCCAGATTGGGGAACAG ATCTCACTAGTAAGGATGAAGGTTCCGTGGCCGCTGTCAAAGAGGGAGGCTATAGTGCACTATTATCTGGTTGAGTACTT TCAAGAAGACTTGACAATTGTTCTCATAAAATCGGTCTCTGAGTCAGAGAGCATGGATGGGGCCATTGATGGTATCAACA GAGATGCAATTCCTGAAGCAAAGGATGTTGTTAGAATTGACTTTGTGGGAGGTTATGTTTTGCAAAAGGTGACCTCAGAA AGAAGTTACTTTCGGACAATGGCAAATTTGGATATAAAGCTGGACTTTGTACCTCCAACCCTTATAAATTTCATTTCAAG GCAACTCATCGGAAGCGGTTTCAGACTTTATCAGAAGGCTGTGTCCTCTATGATGAACAATGATAAAGAAATCATCAAGA CCTTGGGTGACTCATTGTATGTTGGAATTCGAGAAGCTCTTTACAACACTAGTGGATCAAATGCTATGGATGGGGAAGAG CTTAACATAGTTTCTAGCATTCTTCCTGCTGAAGAACATGCTCAAAGCAAGCAAGATGGGACAAAACATGTATCTTGGGA GGATAGAGGCAACCAATCTACGAGTAATTGCAATGGTGAGATTTTAGAGGCAGGTAATGGAGAGATTGTAGAAGAAGATA GTGAAGAGATTGTACAAATTGCGGAGGATGTCAACAAAGTATTGAAGGGCAAGAGGAATGATAAGATTGTAGATGCAGAT AATGAAGAGATTTCAGAAGCAGAGAATGAAGAGATTGTACAGATTGAAGAGGTTGTCAAGAAAGTACATGACATCACCAT TGAGGAAGATAGTGCCATGAATTTTCTGAAGAGAAAGAAGAATGTAAGCATAAACTCAGATGTAAAAAAGGCTCTAGAAA CTCTAGAGAAGGCCATTTCAATGGTTCGCGAATATGGTTTTCATCCTCGCAGGCCTTCTTTTAGATTCGGGAATGAAGAG AGAAAAGATAGCACAGTTGAATCATATACTGCAAAACCTTCTCAGCTATCTTCAAAGGTTAGTGTTGAAGTATCAAGCAG CAATACACTGAATGAAACTTTAGAAGAACCTGTGACTAACTCTGAAATCCAAAACATCAGGCACACAGGAACAAATCCTA ATTTAAAGGAAGTTAACCATAACAAGGTTGTACCAGCTGCTTCACCAGAGCAGAATCTCCAAAGACTATTTGAAGAAAGC CGGGCTGATTCATTTTCTATGAAAAATGAGGCAACACTGAACCAGACAACAAGTGGTAGCAACCAATTAGACATTGATGC AATCCAAGATATGTCTTTAGATGACAAAAAAAAGTCAAGCAGGAAGAAAAATTATATATACTGTTGTTTTCTACGTTAG
Protein sequence (LotjaGi1g1v0739500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEITNFLDMISASVDNSGGSSIS HTDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGPVDVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQ ISLVRMKVPWPLSKREAIVHYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVTSE RSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDSLYVGIREALYNTSGSNAMDGEE LNIVSSILPAEEHAQSKQDGTKHVSWEDRGNQSTSNCNGEILEAGNGEIVEEDSEEIVQIAEDVNKVLKGKRNDKIVDAD NEEISEAENEEIVQIEEVVKKVHDITIEEDSAMNFLKRKKNVSINSDVKKALETLEKAISMVREYGFHPRRPSFRFGNEE RKDSTVESYTAKPSQLSSKVSVEVSSSNTLNETLEEPVTNSEIQNIRHTGTNPNLKEVNHNKVVPAASPEQNLQRLFEES RADSFSMKNEATLNQTTSGSNQLDIDAIQDMSLDDKKKSSRKKNYIYCCFLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 611 | 611 | 3.9E-276 | – | |
| PANTHER | 1 | 611 | 611 | 3.9E-276 | – | |
| SUPERFAMILY | 81 | 281 | 201 | 4.39E-22 | – | |
| Gene3D | 81 | 286 | 206 | 5.9E-14 | ||
| MobiDBLite | 470 | 487 | 18 | - | – | |
| MobiDBLite | 470 | 538 | 69 | - | – | |
| MobiDBLite | 488 | 538 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0739500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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