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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0739500 |
Transcript ID | LotjaGi1g1v0739500.5 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | polyketide cyclase/dehydrase/lipid transport superfamily protein; TAIR: AT5G06440.2 polyketide cyclase/dehydrase/lipid transport superfamily protein; Swiss-Prot: sp|B4RUW0|MSRB_ALTMD Peptide methionine sulfoxide reductase MsrB; TrEMBL-Plants: tr|K7KG54|K7KG54_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0739500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131352490..131358129) extracted from Lotus japonicus Gifu genome v1.2.
ATCAAACACTACCAATAACAATAACAATTAAAAATTAACAATAGCTTGGTTTGGTTGTTCTTCAATATTGCTTTGGGGTT CTACTACATCAGGTGGCTGTGTCCCCTCTTTGTAGACTGAGATCTGCATTCTTGGGTATGTGGAAAATTTTCAGCTTTTT CTTATTGTTAACACCCCAATTGAGCTTCTGAAATTTTCATGTAAGTGGGATTTTGGTGAAGTTTATAGCTTTAATTGAAT TGGATATATCACATCATCATCACATCAGTGCCTCCGTTTTAGTTATGGATTGAATTTCTTCATCTTCCTTAAGTTTGGTT TTAATTTTGGTTTGTTCACGTGGTCTCATTAAATTCTGGTATGTGTCTTACATGGGTTGGGGCTTAGCTGTGGTAGTTGT CCTTCCCTGAACAGATTCTGTAAAACAAGTGGTTAAGAAATTTCAAGATTTTTTTTTTTGTAATTTCATTTATTGCAGCT CAGAAGCTTCAAGTTGGTGTCTTGCAGATTTTGTACTGGCCATTTAATGATGACTTTCTAGGCATTTCTTATTTTAGTTA ACAATAGTTGGGCCACAGTGGAGAGAAAAGTTTTCTGGCAAATAACGTGACAAGTGCGATTTTTCTTCTGCTTTGTACAC TTACAATTCAGGTGGTAAATTCAGTGAAAAGTGGTACTTTTCTTCTGCTTTGTACGCTTACAATTCAGGTATCAATTGTG CTTGGTAGTCTTGTTTTTACCTAGAGTGGATGATTTATATGATTATGGAGAATATTTGCAGTACTTTCTGATGGAGGGCT TGTTCTTCTTTCCTTAGAGATACATTGATGGCGAAAAAGAGACATATTGTGCAGTATAGGGAGAGGTTGGACAGGACCCT TGCTTCCCCTGATCTCACAAATGGCGAGATGCTCAAAACGCTTGTCAAAAGTCAACTACTACGTTCTTCACAATTTGAAA TTGAAGGTAATTAGATTAATAGGTCCCTAATTTGCTTTGATCTCACTTAAGCTGAGATGGTACTAGCTAACTGGAATTAT TATTTTAGGTACTTCAGTTTGTATTTTTTTTTTAAGTTTTATGTTTGAATTTGTAGGTTATGAAGATAAATTTGTAGAAA CCAAAACTGCAGAGATAACAAACTTTCTTGATATGATAAGTGCTTCTGTAGATAATAGTGGAGGATCTAGTATATCACAC ACTGATTGGAAGGTATGATATCTACTTTGGCTGTGTCTGGATATATGTTTTTGCGCTGATATTTGCACGCACTTTAACAT AAACAGTGAACATAACTCTTATGAAAGTACGCTCACATTGCATTCAACTGTATCCAAACATTCAGCCATGTCATATTTCT TGACATTTTATTGCCCTATGTAGATTATCCTCCACTGATTTGGATCTTAAACTTTTTGTTTTGCTTTATTTATCCAATTA TTGACTTCCTTTAAGAAAAATATGTGAGTTTACTTTAGCTGATTGACCTCTTGCTTCAGTGGTTTATCCTTTTTTTAGAA TCCGATTGAGCTAATGCAATCTTGTGTAACATTTTGTATACTGAATTCTGATCATGCTTTCTGTAATAGATACATGACTT TTACTATCAAATTCTTGAGGAATTTTGATAATTTTACTTCTTTCAACAGTTAAAACAGGATAATGAAGATTACCGTGTTA TGTATCGTGAAGGACCAGAGGGAACTCCCTTTCATACATTGATGGTTGAAGGCTATATAGATGGGCCTGTTGATGTTTGT GAGTCACGTTAGATCAGCCAATTTTTTTTGGCATCACCTTTATAAGTTTAACAACAAAGGCCATATTGTTATGTTTAACA TGTGAAGTTTTAATGAGTTATTTTCTTCATTACAGGTTTATGCCTCTCATGGGAGGCACCCCTTTACAAGAAATGGTGAG AATCACAGTGCAAAATGTGCTTTCAATTTTCTGTATATTTGTCTCTTAATGACACTGTACACTAGTGTCATTTTTTCACA CATGAATTTCTATGTATGAATGGAGTTGCAACAATTAATGAAAATTGCAGTTACAAGATATGTCTTCTGAACCATCTGAC ATTAATTTTGTTATGGGAAGGTGCTGCAAGTTTTTGTATAGCATTTAAATTATTTAGAATCTATGTTGGGGGATCGACAT AAAAATCTCATTGACAATTTTAGTATGTGTTTCATATTAACTCAAGTGATTGCTAACGTTTGTTTGGACATGCATCAAAG AGTATCCAGACATAGCCTTAGTTGATAGTTTTTTTCACAAATTTCATTTTTCAGGTGGCCTCAGTTTACTGTTCCGCCTT TCAAAGTTTTAGCAGCTGATTGTTTGCAAAAGGTCCAGATTGGGGAACAGATCTCACTAGTAAGGTTTGTTGCCAGCATC AATTACAGAATTTCTCTTTTAGTGTGACTCACCATGCTAAAAGCCTTCACTGTTTATAGCATGTTTGGATGAGCTTCTGT TTCCTCAGAATCAATTCTGACATCCAGAAGCTACTCACAGAAGTTTCTTCCCAAAATTGATTTTTACTTTAGAATCAATT GTAGAAGTATTTTCAAACATAACTTAGTACTCATATTGTTTCAAATTTTGGAAGAAAGGATGAAGGTTCCGTGGCCGCTG TCAAAGAGGGAGGCTATAGTGCACTATTATCTGGTTGAGTACTTTCAAGAAGACTTGACAATTGTTCTCATAAAATCGGT AGTCACTTGGATCCTTTTCTCTTCCTTTTCTTCTTTTTGTAAAGAGAGCTAGTTATGATCTTCAGGAAATTTGTTTGTTT TGCTTTCAGGTCTCTGAGTCAGAGAGCATGGATGGGGCCATTGATGGTATCAACAGAGATGCAATTCCTGAAGCAAAGGA TGTTGTTAGAATTGACTTTGTGGGAGGTTATGTTTTGCAAAAGGTGACCTCAGAAAGAAGTTACTTTCGGTGAGTTTTAA GTGAATACTGTAACATTAGAAGTATATTTTTAGTAATGGGCTAATTTAGAGGGTTGTGTTGTCCTCTACTTGTTAATCAC TAAAATGTAAATTTCCAAACTCATTATTATCTATCCTGACATGACATTTATTAGACTAAGCAATCACTTATTGGTCAATT ATGAGAGTGGACAATCCTTGGGAGTGCATGGAAAAGTTGTCCTTTAAGTTACTTAAAGGGGAAAATTGTCACCTGTTATA GACCATAAAACCCCATAGATCTGCTTAATTTTAAGAGGTGAAAAAGTTTGAAGAAGTTCCTGTATGTGACTGGATTTCAT GTTGGGATATGGTTTTATTTGCGTATCAGATCCCGGTGAAGCTGGAATTTTTCTCATAGATTTTGCAAATTAACTGAGTT ACCTAAAGATAATATTTTTGTACTATGGGAAATCATGGCGAGTATTATATTGTCTTTATGATAGAGAGGGATCTCCATCT TTAAACTAAAAATAACTTCACTGATATTTGGTGCTCCAGACTTTTGGCTTTGCTAATGTTTCTATGAACAGTTAATCATA CCTGGTTTAGTTGTTCTATCTACTTTACTTGTTTCCATTGATAACTTGTCTTATGTTTTCATTGTAAGTTACTCATTCAT TTCTTAATTGATACTAAAAGAAATATGTAATTGAACTAGCTTTAGTTTATAGTCTAATTATGTGGCTTGGCTTCCAAATG TGGTGAAAAATGAAGATACCAAACAGAAAAGGGATTTTGAATTTTGATTAGCTGCCTATAAATTTGAAAAAAATTGTAGG ACAATGGCAAATTTGGATATAAAGCTGGACTTTGTACCTCCAACCCTTATAAATTTCATTTCAAGGCAACTCATCGGAAG CGGTTTCAGACTTTATCAGAAGGTTGTAGATTCTTTTCAGATATACTTTGATTAGGCACCCATCCAATATTTAAAACATC CTTTCATGGATATTTTGTAATTTCTTATATTGCCTTTTGATGCTGACCAACCCCTGAAATTGTTATAGGCTGTGTCCTCT ATGATGAACAATGATAAAGAAATCATCAAGACCTTGGGTGACTCATTGTATGTTGGAATTCGAGAAGCTCTTTACAACAC TAGTGGATCAAATGCTATGGATGGGGAAGAGCTTAACATAGTTTCTAGCATTCTTCCTGCTGAAGAACATGCTCAAAGCA AGCAAGATGGGACAAAACATGTATCTTGGGAGGATAGAGGCAACCAATCTACGAGTAATTGCAATGGTGAGATTTTAGAG GCAGGTAATGGAGAGATTGTAGAAGAAGATAGTGAAGAGATTGTACAAATTGCGGAGGATGTCAACAAAGTATTGAAGGG CAAGAGGAATGATAAGATTGTAGATGCAGATAATGAAGAGATTTCAGAAGCAGAGAATGAAGAGATTGTACAGATTGAAG AGGTTGTCAAGAAAGTACATGACATCACCATTGAGGAAGATAGTGCCATGAATTTTCTGAAGAGAAAGAAGAATGTAAGC ATAAACTCAGATGTAAAAAAGGCTCTAGAAACTCTAGAGAAGGCCATTTCAATGGTTCGCGAATATGGTTTTCATCCTCG CAGGCCTTCTTTTAGATTCGGGAATGAAGAGAGAAAAGATAGCACAGTTGAATCATATACTGCAAAACCTTCTCAGCTAT CTTCAAAGGTTAGTGTTGAAGTATCAAGCAGCAATACACTGAATGAAACTTTAGAAGAACCTGTGACTAACTCTGAAATC CAAAACATCAGGTGATTATGTTACCCTTAACAAAAGTTCTTTTTGTGTGATTTTGTATCCTTCCATATGGTGTGTTTGGA AATATAAGCCAACTAGTAAAGAATGCAGTTTAATTTTTAATTATGAAATATATATTTAACTGATGCTCTTGTTTCTTTTT TTATCTTTTAGGCACACAGGAACAAATCCTAATTTAAAGGAAGTTAACCATAACAAGGTTGTACCAGCTGCTTCACCAGA GCAGAATCTCCAAAGACTATTTGAAGAAAGCCGGGCTGATTCATTTTCTATGAAAAATGAGGCAACACTGAACCAGACAA CAAGTGGTAGCAACCAATTAGACATTGATGCAATCCAAGATATGTCTTTAGATGACAAAAAAAAGTCAAGCAGGAAGAAA AATTATATATACTGTTGTTTTCTACGTTAGGCCAGTAACAGAAGAACATTATGTATTTTGATGCCTTAAAGAGTTAATTT GATGTTTTAGAGCAATGTAAGTATGTGAAGGAGGTGTTAAGGGGTTATAGGTATAAGTATGGGAAATTTTGAAATAAAAA AAATAAACAAGAACAATTAAATTTCCATTATTTATAAATTTTGGTTCCTCTTCTCTATCTTTCAAGCCCTCTCACTTTTG GATAGGAAGGAAGGATGTTGCCCCTTTATTTGTCCCTTTCTCCTCTCTAAATACTTGACCTAAGTGAAGTGTTCTTCTAG AAATGAGATTGTTCGGTTCTCCTTGTCTCCGGTGGTGGTGTGTGGCCTTGGTTGGCTGAGCTAGTGCGACGGACCTATGT TAACACAACGGAGGTGTACTTGCAGACGACACTCCGACGCCCAAGTCAATGTGAGAGCAAAGAGAGAATCTCAAAGTCAA AGTCTATGAAGAACTCAAAGTATAGCACTATGAGCTAAAG
CDS sequence (LotjaGi1g1v0739500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGAAAAAGAGACATATTGTGCAGTATAGGGAGAGGTTGGACAGGACCCTTGCTTCCCCTGATCTCACAAATGGCGA GATGCTCAAAACGCTTGTCAAAAGTCAACTACTACGTTCTTCACAATTTGAAATTGAAGGTTATGAAGATAAATTTGTAG AAACCAAAACTGCAGAGATAACAAACTTTCTTGATATGATAAGTGCTTCTGTAGATAATAGTGGAGGATCTAGTATATCA CACACTGATTGGAAGTTAAAACAGGATAATGAAGATTACCGTGTTATGTATCGTGAAGGACCAGAGGGAACTCCCTTTCA TACATTGATGGTTGAAGGCTATATAGATGGGCCTGTTGATGTTTGTTTATGCCTCTCATGGGAGGCACCCCTTTACAAGA AATGGTGGCCTCAGTTTACTGTTCCGCCTTTCAAAGTTTTAGCAGCTGATTGTTTGCAAAAGGTCCAGATTGGGGAACAG ATCTCACTAGTAAGGATGAAGGTTCCGTGGCCGCTGTCAAAGAGGGAGGCTATAGTGCACTATTATCTGGTTGAGTACTT TCAAGAAGACTTGACAATTGTTCTCATAAAATCGGTCTCTGAGTCAGAGAGCATGGATGGGGCCATTGATGGTATCAACA GAGATGCAATTCCTGAAGCAAAGGATGTTGTTAGAATTGACTTTGTGGGAGGTTATGTTTTGCAAAAGGTGACCTCAGAA AGAAGTTACTTTCGGACAATGGCAAATTTGGATATAAAGCTGGACTTTGTACCTCCAACCCTTATAAATTTCATTTCAAG GCAACTCATCGGAAGCGGTTTCAGACTTTATCAGAAGGCTGTGTCCTCTATGATGAACAATGATAAAGAAATCATCAAGA CCTTGGGTGACTCATTGTATGTTGGAATTCGAGAAGCTCTTTACAACACTAGTGGATCAAATGCTATGGATGGGGAAGAG CTTAACATAGTTTCTAGCATTCTTCCTGCTGAAGAACATGCTCAAAGCAAGCAAGATGGGACAAAACATGTATCTTGGGA GGATAGAGGCAACCAATCTACGAGTAATTGCAATGGTGAGATTTTAGAGGCAGGTAATGGAGAGATTGTAGAAGAAGATA GTGAAGAGATTGTACAAATTGCGGAGGATGTCAACAAAGTATTGAAGGGCAAGAGGAATGATAAGATTGTAGATGCAGAT AATGAAGAGATTTCAGAAGCAGAGAATGAAGAGATTGTACAGATTGAAGAGGTTGTCAAGAAAGTACATGACATCACCAT TGAGGAAGATAGTGCCATGAATTTTCTGAAGAGAAAGAAGAATGTAAGCATAAACTCAGATGTAAAAAAGGCTCTAGAAA CTCTAGAGAAGGCCATTTCAATGGTTCGCGAATATGGTTTTCATCCTCGCAGGCCTTCTTTTAGATTCGGGAATGAAGAG AGAAAAGATAGCACAGTTGAATCATATACTGCAAAACCTTCTCAGCTATCTTCAAAGGTTAGTGTTGAAGTATCAAGCAG CAATACACTGAATGAAACTTTAGAAGAACCTGTGACTAACTCTGAAATCCAAAACATCAGGCACACAGGAACAAATCCTA ATTTAAAGGAAGTTAACCATAACAAGGTTGTACCAGCTGCTTCACCAGAGCAGAATCTCCAAAGACTATTTGAAGAAAGC CGGGCTGATTCATTTTCTATGAAAAATGAGGCAACACTGAACCAGACAACAAGTGGTAGCAACCAATTAGACATTGATGC AATCCAAGATATGTCTTTAGATGACAAAAAAAAGTCAAGCAGGAAGAAAAATTATATATACTGTTGTTTTCTACGTTAG
Protein sequence (LotjaGi1g1v0739500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKKRHIVQYRERLDRTLASPDLTNGEMLKTLVKSQLLRSSQFEIEGYEDKFVETKTAEITNFLDMISASVDNSGGSSIS HTDWKLKQDNEDYRVMYREGPEGTPFHTLMVEGYIDGPVDVCLCLSWEAPLYKKWWPQFTVPPFKVLAADCLQKVQIGEQ ISLVRMKVPWPLSKREAIVHYYLVEYFQEDLTIVLIKSVSESESMDGAIDGINRDAIPEAKDVVRIDFVGGYVLQKVTSE RSYFRTMANLDIKLDFVPPTLINFISRQLIGSGFRLYQKAVSSMMNNDKEIIKTLGDSLYVGIREALYNTSGSNAMDGEE LNIVSSILPAEEHAQSKQDGTKHVSWEDRGNQSTSNCNGEILEAGNGEIVEEDSEEIVQIAEDVNKVLKGKRNDKIVDAD NEEISEAENEEIVQIEEVVKKVHDITIEEDSAMNFLKRKKNVSINSDVKKALETLEKAISMVREYGFHPRRPSFRFGNEE RKDSTVESYTAKPSQLSSKVSVEVSSSNTLNETLEEPVTNSEIQNIRHTGTNPNLKEVNHNKVVPAASPEQNLQRLFEES RADSFSMKNEATLNQTTSGSNQLDIDAIQDMSLDDKKKSSRKKNYIYCCFLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 611 | 611 | 3.9E-276 | – | |
PANTHER | 1 | 611 | 611 | 3.9E-276 | – | |
SUPERFAMILY | 81 | 281 | 201 | 4.39E-22 | – | |
Gene3D | 81 | 286 | 206 | 5.9E-14 | ||
MobiDBLite | 470 | 487 | 18 | - | – | |
MobiDBLite | 470 | 538 | 69 | - | – | |
MobiDBLite | 488 | 538 | 51 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0739500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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