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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0742300 |
| Transcript ID | LotjaGi1g1v0742300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|K7MZE3|K7MZE3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0742300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131604680..131609109) extracted from Lotus japonicus Gifu genome v1.2.
CTGGATCGCTTTTGCTCTCTATTAATCTGCTTGAAATTTCCAAGTATTTACGTATGAATTGTATTTACTATTTACTTCCA TCCTCACGAAACAAAACAAAGCAGGTTGACTTGACTTCACTTTGATTCTACACCGTGCTTTCCACTACTTCTCTTTTCTT TCAGTTTCTCACATCCATAATCTCTTTTTTTCCCCCTATCTTGAGACTTGAAGTATTTCTTGTTTTCGTTTATTATTTGC TGTGGCCGCTCATAGGTAGCTACAAGAATGGATAATCAGAAGGAAACGAGTACGCATTTTGAGACGTTCACCTGGAGAAT TGAAAACTTCTCAAAGCAAAAGACCAAGAATCTACAATCCAAGGCTTTCCGAATCGCAGGTTATAAATGGTACTTGCTAA TGAATTTGAAGTCTTCTAAGTTTTTTAATTATGTACTCTTAACTATATGCTTAATAGAAAAGAAAATGTCTTAAAAATGA TAGAATATAAGTTTAAAATAAATCTTAACAATTTTTTAATTACTGCTTTGAACATCCTGTTTGTACTTTTCACTGATTAT GATAATTATCACAGGCGGATTCTTCTGTATCCATTGAGGAAAAACGTTGACCATTTTTCATTATATTTGATGGTTGCGGA TTCTTTACCAGCTTATGGATGGAGCAGAAACACGTATTTCAAGTTGGCTCTGGTTAATCAGTTGGATGGCAACAAGTCTG TTGTAAAGGGTAGTTTCTCTTTTCTCATAATCAAATATGGAATCTAGAAATAACTCGGAGAAGCTTCTTCCCTCAAAGAA TTTTAACTTACAAACATACACTTAGTTGTTCTCTTCTCTTTGCTTTTTCTTCCTTTCTTCCCCATTCTTATATTGTATAT GATTTTGTCTTGGTATTTGGTAATGATGGTAAAGCCGCTTTGACCATTTGAGTTCTGAACTTCAATGAAGCTATTTATTC AAACATCACATCACATTTTACTATTGTTCAATCTCATCATAATGCCATCAAAGTTTGAGCTGTTGGAATAATTTTATATT ATATTTCTGATAATATTTGCATGCTGTATTCTGTAATTCCAAATTTCTGATTCCAGATATAAATTTTGACATTTCCAGAG ACTCATCAGAAGTTCAATGGTGGATATCGCAGCTGGGGCTCATCATTCATGAATCTCAGTGACTTCTATGACTCTAAACA AGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATATTTGTGTTTCCAATGTTAGCGCTATTCAATCTACCAGCT TTAAAAAGGTTACTCCAACCCATGACTCTGAATTAGGTGATCAAGAAACAGAAACATCAGAAGAAAGTGAGACACCTAGT TCCTCAACCTATGGGTCTAGTCAAACGGAACAGGAAGTTCAAGTTTCAGATTTGACTCTGAGAGACCTCCTAGATTTGGA GAATTTAGGAGCAGAAGAAGAAGCTTTTGTTCCACTGTTGGAAGAGGCCTGCACTTGGCACCCTTCCCTGATAAGGAGCC AGAGTAAAAGAACTAGCAGGTTCAAACTATGGGCATTCACATCTTTGGGTCAAGTTCTACATATCCTCAAGACAAGTAAA GTGAAGGATATGAATGAAGATGCCATCAATCACCTTCAAAGTTTGTGGGAGGAGCTTGTTAAGGCTTCTGGATTTGACTT GGCTTGGCTGGAGCCTTATGTTGAATCTGCATTGGGTTTGAAAGAACATTTGGAAAGAACAGTGGCAGTGAATAAGCTGA AGGATAAGGTGGTTGATGTGGAGATTAAAATGAAGAAGCTGAGGGGTGAATTGGCTGCTGCAGAAGCTGAGTTTGAGAGT GCAAGGAGAGACTTGGCTGAGGCAAGAAAAGGTTTCGTAGAGATTGATTTGAATGCTGAGTTGGGTTATGCCATGTTTTA GATTTTAGACAACTTGCAGCTGGCATCATTGCTAACATGCGTTGACACTCTCTTTGAGATAAAAGTGTACAAAACTCATG TTATGGATTAAGATCAAAATCTGTTCACGTTACATTTAACTGGTATCCGAACGCACACTTGTATGTGAGCCTACTTTTCC TGAAGGTTCTCCAAGTTCAATTTCCTTGCAAAATTATGGGGCAAAATACATTTGGTGTCCACTGCAGTGCTGCTGCTAAT ATCACATGTACTTTGTATGATTCTTCTTGCATCACGGAGATTGGAGATTTTTTTTGCAGATAACTTTGGTTTACTACATT TTTATCACATTAAATCTTGCATGGTGATTGATTCATGCATAAAATTGCCCATAAACTTGTATATTCTAAAACTGAATAAA TTCATATCTAAGAACCCGAAAGATATAGCAAAGAAAGGTGTGGTGAAGGTCAAGGTATAGACCATAATCTCCAAAGGACT GTTGAGGAGTAGAACCCGATGGAGGAGGAAATGAAGACGGTTGAGACTGTGAAGTCGGAACACTGAGTGAGATTCACTGA TAAACTTTCAGTGAATGCCTCTCTCGTTCTTCTCAAGGAAAGATTCATGAGCAAGCAAAAGTGACACAAGTTCACTCAAT GAGGTCATATCTAGACCACGATCAACAACAACAAAGGAGTCAAAATCACTGGACAAAGCTACAAGAACAATCCCAAACAA GTTTCGCATATGAATCAGATCACCGATTGAAGACAATGAATCAACGATAGCTAGAACGACAAAAAACTCAGTGATAGAAC AATTTCCTTTAACAATGGAGCGTCGTAGTTTAGTTTGAAGCTGTCGACTTCGTCTGATTGTGAAAAAACTCATGAATTGT GTTCCAAACTTGCAAGGAATGACGACAATTCAGAACTCTGGGAAGAAAAGAAACATCAATGGTGGAAAGGATCCAAGTGC ATAACAGAGCATTGCATTGCTCTCACCCAGCATAAAGAGGATTAACCTCATCCTTTTCTCTAACGGTATCAGTGAGATAG CAAGAAGGAAAAGAAGGATCAATGACAAGATACTGGAGCTTATGGCCGCGAATGAGACCTTCAACTTACTGACGCCATTG CAGAAAATTCGTCTCATCCAATTCGATGGAGAGAGGTTGAGAATGAGTGAATTGTACACTCGCCGGAGCATACTTCGTTG TCACCGACGTCTTTGTATGAGGTGGTGAGGGAGCCATGGCCGATCTCACAAGCTCACGATACCATATAAGAAAGTAGAAA CAGAGGAAAGAAGTGATGAAAGAATCTGTGTAATTCTCATTAGATGTGAATGATTTACATCACTAGTTATATAGAACAGA GAAAGCTTACAGACAGGGTTGGGGAATAAATGTTTCTAGAATGAAATGTTCTTCTTCTAGCCCAGAACTGCAATTCTTTG TAAAAACAAAAGAGTAACAGTGAATATAACTTACATTATGAACTTAGGTTATCTGATATCTGCTCATGTCAAGTCTATTA TTAAACAAAAACAGGACTAATTTCCACAGAGCATGAAACCAATCCATCACACAAATCATGCATGAACTGCTATAAAACTC TACAAGGCCAAAATAGAAAAACAAAACCTCTTTTGCTGAATAAAACATTCCATGATCAAATTCATTCAATTTTTAAGAGG CCAAAATAAATCGGCAGCAATTATTTCTAATGAAAGTAACCAAGAACCTGACCACCCACATTCTTTCTAATGGCCTCTTC ATGATCCAAAACACCATCCGGCGTCGAAATCACAACATAACCCCACTGCACACACAGAAACAAAATGGCATTAACAAGAT TACCCTTCTCTTTAACTTTCATTTCATTTTTTCGAAACTCAAAATCTTCCATAAAAACAGATACAAACAGCAGCATCCTA GTCCTACAAAACATTACTTCGACCGAACACGAAACAACATTAAGCATTAAAAAACCAACCTGATTAGTTGGAAGAGTATT CAATCTGTAAGCTTCAATATCCCTTGCCTTGAGATCTTGCCTGTATGTGAGGGCCTTGCAGTCATTGATCCTACCTTGTA GCTCAACTGTTATCCTCCCAACTCTATGTGGATCATAGACTTGGAAATTCTTCACATAACCTATCAGAAATCAAACAACA TCATCAGCTAAAGTGCTAAACCTACACAGTGAGAATTCATAGATTGGAAGGTGAAATGATCTTACCGCGGTTTTTCATGA TTTGGAGAAAAGAAGAGATGACGGTGGAGATGTGGCTGAGCTCCACCGCAGCTTTGCCTCTCTTCTCGGCATTGACCATC GTCCTCAATGCATCGTTCAGAATCCTCCTCCCCATTCTGCACTCTCTCGACACCACAGTAGAGACGAAAACAAGTGATGT GAAGGCAAGGGTTTGAAATCGCAGGCTTGAAGGGCACATTCGACATTCAACGATGGAGGGTGAACCATGTTTCTATGTTT TTTTTAATGGTTTTTTAGTTTGAAAGTTAG
CDS sequence (LotjaGi1g1v0742300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAATCAGAAGGAAACGAGTACGCATTTTGAGACGTTCACCTGGAGAATTGAAAACTTCTCAAAGCAAAAGACCAA GAATCTACAATCCAAGGCTTTCCGAATCGCAGGTTATAAATGGCGGATTCTTCTGTATCCATTGAGGAAAAACGTTGACC ATTTTTCATTATATTTGATGGTTGCGGATTCTTTACCAGCTTATGGATGGAGCAGAAACACGTATTTCAAGTTGGCTCTG GTTAATCAGTTGGATGGCAACAAGTCTGTTGTAAAGGAGACTCATCAGAAGTTCAATGGTGGATATCGCAGCTGGGGCTC ATCATTCATGAATCTCAGTGACTTCTATGACTCTAAACAAGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATA TTTGTGTTTCCAATGTTAGCGCTATTCAATCTACCAGCTTTAAAAAGGTTACTCCAACCCATGACTCTGAATTAGGTGAT CAAGAAACAGAAACATCAGAAGAAAGTGAGACACCTAGTTCCTCAACCTATGGGTCTAGTCAAACGGAACAGGAAGTTCA AGTTTCAGATTTGACTCTGAGAGACCTCCTAGATTTGGAGAATTTAGGAGCAGAAGAAGAAGCTTTTGTTCCACTGTTGG AAGAGGCCTGCACTTGGCACCCTTCCCTGATAAGGAGCCAGAGTAAAAGAACTAGCAGGTTCAAACTATGGGCATTCACA TCTTTGGGTCAAGTTCTACATATCCTCAAGACAAGTAAAGTGAAGGATATGAATGAAGATGCCATCAATCACCTTCAAAG TTTGTGGGAGGAGCTTGTTAAGGCTTCTGGATTTGACTTGGCTTGGCTGGAGCCTTATGTTGAATCTGCATTGGGTTTGA AAGAACATTTGGAAAGAACAGTGGCAGTGAATAAGCTGAAGGATAAGGTGGTTGATGTGGAGATTAAAATGAAGAAGCTG AGGGGTGAATTGGCTGCTGCAGAAGCTGAGTTTGAGAGTGCAAGGAGAGACTTGGCTGAGGCAAGAAAAGGTTTCGTAGA GATTGATTTGAATGCTGAGTTGGGTTATGCCATGTTTTAG
Protein sequence (LotjaGi1g1v0742300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDNQKETSTHFETFTWRIENFSKQKTKNLQSKAFRIAGYKWRILLYPLRKNVDHFSLYLMVADSLPAYGWSRNTYFKLAL VNQLDGNKSVVKETHQKFNGGYRSWGSSFMNLSDFYDSKQGYLVNNTCIIEAHICVSNVSAIQSTSFKKVTPTHDSELGD QETETSEESETPSSSTYGSSQTEQEVQVSDLTLRDLLDLENLGAEEEAFVPLLEEACTWHPSLIRSQSKRTSRFKLWAFT SLGQVLHILKTSKVKDMNEDAINHLQSLWEELVKASGFDLAWLEPYVESALGLKEHLERTVAVNKLKDKVVDVEIKMKKL RGELAAAEAEFESARRDLAEARKGFVEIDLNAELGYAMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 142 | 142 | 5.4E-35 | ||
| PANTHER | 2 | 358 | 357 | 4.0E-141 | – | |
| PANTHER | 2 | 358 | 357 | 4.0E-141 | – | |
| ProSiteProfiles | 11 | 134 | 124 | 25.249 | ||
| SMART | 13 | 115 | 103 | 4.1E-9 | ||
| CDD | 13 | 134 | 122 | 7.86552E-29 | ||
| SUPERFAMILY | 13 | 138 | 126 | 4.41E-31 | ||
| Pfam | 18 | 134 | 117 | 8.6E-14 | ||
| MobiDBLite | 151 | 187 | 37 | - | – | |
| MobiDBLite | 168 | 187 | 20 | - | – | |
| Coils | 303 | 344 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0742300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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