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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0742300 |
| Transcript ID | LotjaGi1g1v0742300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase 12; TAIR: AT5G06600.1 ubiquitin-specific protease 12; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|A0A151TVR6|A0A151TVR6_CAJCA Ubiquitin carboxyl-terminal hydrolase 12; Found in the gene: LotjaGi1g1v0742300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131606639..131608965) extracted from Lotus japonicus Gifu genome v1.2.
CTACTTCTCTTTTCTTTCAGTTTCTCACATCCATAATCTCTTTTTTTCCCCCTATCTTGAGACTTGAAGTATTTCTTGTT TTCGTTTATTATTTGCTGTGGCCGCTCATAGGTAGCTACAAGAATGGATAATCAGAAGGAAACGAGTACGCATTTTGAGA CGTTCACCTGGAGAATTGAAAACTTCTCAAAGCAAAAGACCAAGAATCTACAATCCAAGGCTTTCCGAATCGCAGGTTAT AAATGGTACTTGCTAATGAATTTGAAGTCTTCTAAGTTTTTTAATTATGTACTCTTAACTATATGCTTAATAGAAAAGAA AATGTCTTAAAAATGATAGAATATAAGTTTAAAATAAATCTTAACAATTTTTTAATTACTGCTTTGAACATCCTGTTTGT ACTTTTCACTGATTATGATAATTATCACAGGCGGATTCTTCTGTATCCATTGAGGAAAAACGTTGACCATTTTTCATTAT ATTTGATGGTTGCGGATTCTTTACCAGCTTATGGATGGAGCAGAAACACGTATTTCAAGTTGGCTCTGGTTAATCAGTTG GATGGCAACAAGTCTGTTGTAAAGGGTAGTTTCTCTTTTCTCATAATCAAATATGGAATCTAGAAATAACTCGGAGAAGC TTCTTCCCTCAAAGAATTTTAACTTACAAACATACACTTAGTTGTTCTCTTCTCTTTGCTTTTTCTTCCTTTCTTCCCCA TTCTTATATTGTATATGATTTTGTCTTGGTATTTGGTAATGATGGTAAAGCCGCTTTGACCATTTGAGTTCTGAACTTCA ATGAAGCTATTTATTCAAACATCACATCACATTTTACTATTGTTCAATCTCATCATAATGCCATCAAAGTTTGAGCTGTT GGAATAATTTTATATTATATTTCTGATAATATTTGCATGCTGTATTCTGTAATTCCAAATTTCTGATTCCAGATATAAAT TTTGACATTTCCAGAGACTCATCAGAAGTTCAATGGTGGATATCGCAGCTGGGGCTCATCATTCATGAATCTCAGTGACT TCTATGACTCTAAACAAGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATATTTGTGTTTCCAATGTTAGCGCT ATTCAATCTACCAGCTTTAAAAAGGTTACTCCAACCCATGACTCTGAATTAGGTGATCAAGAAACAGAAACATCAGAAGA AAGTGAGACACCTAGTTCCTCAACCTATGGGTCTAGTCAAACGGAACAGGAAGTTCAAGTTTCAGATTTGACTCTGAGAG ACCTCCTAGATTTGGAGAATTTAGGAGCAGAAGAAGAAGCTTTTGTTCCACTGTTGGAAGAGGCCTGCACTTGGCACCCT TCCCTGATAAGGAGCCAGAGTAAAAGAACTAGCAGGTTCAAACTATGGGCATTCACATCTTTGGGTCAAGTTCTACATAT CCTCAAGACAAGTAAAGTGAAGGATATGAATGAAGATGCCATCAATCACCTTCAAAGTTTGTGGGAGGAGCTTGTTAAGG CTTCTGGATTTGACTTGGCTTGGCTGGAGCCTTATGTTGAATCTGCATTGGGTTTGAAAGAACATTTGGAAAGAACAGTG GCAGTGAATAAGCTGAAGGATAAGGTGGTTGATGTGGAGATTAAAATGAAGAAGCTGAGGGGTGAATTGGCTGCTGCAGA AGCTGAGTTTGAGAGTGCAAGGAGAGACTTGGCTGAGGCAAGAAAAGGTTTCGTAGAGATTGATTTGAATGCTGAGTTGG GTTATGCCATGTTTTAGATTTTAGACAACTTGCAGCTGGCATCATTGCTAACATGCGTTGACACTCTCTTTGAGATAAAA GTGTACAAAACTCATGTTATGGATTAAGATCAAAATCTGTTCACGTTACATTTAACTGGTATCCGAACGCACACTTGTAT GTGAGCCTACTTTTCCTGAAGGTTCTCCAAGTTCAATTTCCTTGCAAAATTATGGGGCAAAATACATTTGGTGTCCACTG CAGTGCTGCTGCTAATATCACATGTACTTTGTATGATTCTTCTTGCATCACGGAGATTGGAGATTTTTTTTGCAGATAAC TTTGGTTTACTACATTTTTATCACATTAAATCTTGCATGGTGATTGATTCATGCATAAAATTGCCCATAAACTTGTATAT TCTAAAACTGAATAAATTCATATCTAAGAACCCGAAAGATATAGCAAAGAAAGGTGTGGTGAAGGTCAAGGTATAGACCA TAATCTCCAAAGGACTGTTGAGGAGTAGAACCCGATGGAGGAGGAAATGAAGACGGTTGAGACTGTGAAGTCGGAACACT GAGTGAG
CDS sequence (LotjaGi1g1v0742300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCGGATTCTTTACCAGCTTATGGATGGAGCAGAAACACGTATTTCAAGTTGGCTCTGGTTAATCAGTTGGATGG CAACAAGTCTGTTGTAAAGGAGACTCATCAGAAGTTCAATGGTGGATATCGCAGCTGGGGCTCATCATTCATGAATCTCA GTGACTTCTATGACTCTAAACAAGGCTATCTTGTGAACAACACATGCATCATTGAAGCTCATATTTGTGTTTCCAATGTT AGCGCTATTCAATCTACCAGCTTTAAAAAGGTTACTCCAACCCATGACTCTGAATTAGGTGATCAAGAAACAGAAACATC AGAAGAAAGTGAGACACCTAGTTCCTCAACCTATGGGTCTAGTCAAACGGAACAGGAAGTTCAAGTTTCAGATTTGACTC TGAGAGACCTCCTAGATTTGGAGAATTTAGGAGCAGAAGAAGAAGCTTTTGTTCCACTGTTGGAAGAGGCCTGCACTTGG CACCCTTCCCTGATAAGGAGCCAGAGTAAAAGAACTAGCAGGTTCAAACTATGGGCATTCACATCTTTGGGTCAAGTTCT ACATATCCTCAAGACAAGTAAAGTGAAGGATATGAATGAAGATGCCATCAATCACCTTCAAAGTTTGTGGGAGGAGCTTG TTAAGGCTTCTGGATTTGACTTGGCTTGGCTGGAGCCTTATGTTGAATCTGCATTGGGTTTGAAAGAACATTTGGAAAGA ACAGTGGCAGTGAATAAGCTGAAGGATAAGGTGGTTGATGTGGAGATTAAAATGAAGAAGCTGAGGGGTGAATTGGCTGC TGCAGAAGCTGAGTTTGAGAGTGCAAGGAGAGACTTGGCTGAGGCAAGAAAAGGTTTCGTAGAGATTGATTTGAATGCTG AGTTGGGTTATGCCATGTTTTAG
Protein sequence (LotjaGi1g1v0742300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVADSLPAYGWSRNTYFKLALVNQLDGNKSVVKETHQKFNGGYRSWGSSFMNLSDFYDSKQGYLVNNTCIIEAHICVSNV SAIQSTSFKKVTPTHDSELGDQETETSEESETPSSSTYGSSQTEQEVQVSDLTLRDLLDLENLGAEEEAFVPLLEEACTW HPSLIRSQSKRTSRFKLWAFTSLGQVLHILKTSKVKDMNEDAINHLQSLWEELVKASGFDLAWLEPYVESALGLKEHLER TVAVNKLKDKVVDVEIKMKKLRGELAAAEAEFESARRDLAEARKGFVEIDLNAELGYAMF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 94 | 94 | 4.2E-16 | ||
| PANTHER | 1 | 299 | 299 | 1.1E-107 | – | |
| ProSiteProfiles | 1 | 75 | 75 | 11.211 | ||
| PANTHER | 1 | 299 | 299 | 1.1E-107 | – | |
| SUPERFAMILY | 8 | 79 | 72 | 8.83E-14 | ||
| Pfam | 9 | 75 | 67 | 2.9E-5 | ||
| CDD | 10 | 75 | 66 | 2.97808E-11 | ||
| MobiDBLite | 92 | 128 | 37 | - | – | |
| MobiDBLite | 109 | 128 | 20 | - | – | |
| Coils | 244 | 285 | 42 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0742300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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