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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0743400 |
| Transcript ID | LotjaGi1g1v0743400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase family protein; TAIR: AT3G58520.1 Ubiquitin carboxyl-terminal hydrolase family protein; Swiss-Prot: sp|Q689D6|RPD1_ARATH Protein ROOT PRIMORDIUM DEFECTIVE 1; TrEMBL-Plants: tr|G8A1B1|G8A1B1_MEDTR Plant organelle RNA recognition domain protein; Found in the gene: LotjaGi1g1v0743400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131700475..131705092) extracted from Lotus japonicus Gifu genome v1.2.
GATGATCATTAAAGGAATGAAAACCGGCAGATAGGTTAGTTCTTTTTGTAAACAATTTGCCCTTTTACAAAGAATACATC AAAGCAATTGCCTAAGCTTTATGACAAGAGTTTCATAAAAAATACCAAGATACATACATACGTGCAGATATATATATTCA TACTTGAAACAAACGCCCCCTTATACTCATGCTATATAACCGGAAATTCTAATATGCACAAAGATCCCTTTGTGTAACCT TGCACAACCCAACAAATTGTCCATTTTACCCTTATTCTAAAATTTAGTCCCATCTTCATCCTTCCCATCATCTTCATTAT CTATTTATCTTCAACCCAAAACAACCTAAATTCATCCCACCCAAATTCAGAAAAATAAAATTAATTGTTTTAAAACAACT CAGAATAAAGATTTTTTTCTTAATTCTGAAACAGAATCTTCTTTAGCATTGATGATTGAACCCCAGTCATAGCACAAGGT GTGGCGGAGCTCTGATTGCAAACAAGAGGAGCAACCAACACCCTTCTCAACTACACTAACCCCTCGTCACAAACAACACC CATCACAACAACCAAACCTCTGGACCAGAAGGTGCTATGTCTGTTGCAGCAGGAAAACAGAGGAAGCATGGATTGCCTAC ACCGAATGCACCCATCTTCCTCATCCCACTCGTCTGCGCCGATTTACCCTCCCTCCTTCACGCGCACTCGGTTCATCGTC ACGCGCCTCTGCCATGGCGAAGCCACGAGCCCCAATTCCGTCAAGGACCAGATCTACAAAATCCCTAAAAAATGGCAGAT GGTTTCTCGCATACGAAATGGAGAAGTTGTATCTTTGTTTTCTCTGGGTCAGATCTAGGGTGGGATGGGTTCGGTTTTGG TAGTGGTTGTGAGTTTGGGTCGTGGGGGTGGAGGTTTCAGGTGGTTGGGGTTGCTGCTGTGGTGGGTTTCGTTGGGTGAG TTTGTTGTTATGGGTTTCTGGGTTAAGTGGGTGGGAGGTGCCATGGAATATTCCCTGATGGTTGTGGCGGTGGGGGAGGG AGATGGTGGTGGTGGGAGTGGGTGAGGTTGAAGATGAAATTAGGGATGAAAATGGGTTGTTGATGATGAAGATGATGGGA AGGATGAAGGTGGAATTAATTTTTGAAATAAGGGTAAAATGGACAATTTGTTGGGTTGTGTAAGGCTGCACAAAGATTAT TAGATGCCCCCCTATATAACCTTATTCAAATTGGTAGGAATGATAAAAAAAATCAAACAAGGACAGAATATTCGCAGAGA GAGAGAGAGAGAGAAGAGAGAAAACCAAACCAGGGTTTATGTTTGACCAAAACAAACAGCAGGGTTTTGTTTTCGTGACC AGAAACACACACAGTCACAGACACAGTTCTGGTTTTGCATGGTTGTTGCAAGAACGATGAACAGAAATGGCGTGGTTCCT TGGATGAAGCTCCAATGGCGGGGCATAGCGAAAGTGCGTTTGAAGTGGGTGAAGAATCGAAGCCTCGACCACATCATCGA CAAGGAAACCGATCTCAAAGCCGCTTCCCTCCTCAAAGACGCAATCAACCGTTCCTCCACCGGCTTCCTCACCGCAAAGT CCTTCTCCGGCTGGCAAAAGCTTCTCGGCCTCACCGTCCCCGTTCTCCGCTTCATCCGCCGCTACCCCACCCTCTTCCAC GAGTTCCCTCATCCTCGCTGGCCCTCCCTCCCCTGCTTCCGCTTAACCGACACCGCACTCCTCCTTCACTCTCAGGAGCA ATCCCTCCACAACCACCACGAAAACGACACCGTTGAGAGGCTCTCCAAGTTCCTCATGATGACGAAAACCCGCACTGTTC CCCTTGTCTCCCTCTACCCTCTCAAATGGGACATTGGTTTGCCTGATTCCTTCGAGAAAACCCTAATCCCCAAATTCCCT GACCAATTTCAATTCGTTAAGGCCCCCAACGGCGTCTCCGCGGTGCGATTATCCAAATGGTGTGAGGAATTCGCGGTCTC CGCATTGCAGAAGAGCAATGAGCGTGACGGTGGTGATGATGGGTATAGGGACTTCAAGAGAGGGAAGGCGGCGCTGGTGT TTCCGATGAGGTTTCCGAGGGGTTACGGGGCGCAGAAGAAGGTGAGGTTTTGGATGGATGAGTTTCACAAGCTGCCTTAC ATTTCACCCTATGCTGATTCCTCTAAGATTGATCCAAACAGTGATTTGATGGAGAAGCGTGTTGTTGGGGTTCTTCATGA GCTTTTGAGTTTGACTATGCACAAGAAAACCAAGAGGAACTACTTGAGAAGCTTGAGGGAGGAGTTGAATCTTCCTCACA AGTTTACCAGGATTTTTACTAGGTATCCAGGGATATTTTATCTCTCATTGAAGTGTAAGACGACGACGGTTACTCTCCGG GAAGGGTATGCCAGGGGAAAGCTTGTGGACCCTCATCCTCTTGTTCGCCATAGAGACAAGTTCTACCATGTCATGAAGAC GGGGCTTCTTTATCGCGGTGATGGCTCAATCCCCAAACCTGAGGGTGGTGCTTTGCTGCTTGATGAAATAGGGGATGAGG GTTCTGAGGAGGAAGAGGTTGAAACAAGTGATGAATTCTCCGAGGGTGAAGTTTCAGGGTCGGATAGTGAATGAGGTTTT TAATGATGCAAGTTTGTATTTATCTGACGAGCAACACAATGACTCACTTCAAAGATTTTTTTTGGCTCACCAGGTTAGTA GCTCTATTCAAAACTACTAACTTTGATGCTTCTCTTATTAAGTATTGAAGATTATAATAAATTGTAGGGCATAGTTGGAT TCAGGAAGTGCTTCTTATTATTGTATGTAACTTTCTTTTACTATTTTAGAGTATGCTGGATGCAGGAAGTGCTTCGTATT TTTTAGTATAAAAAATTGAGTTATGAACCCATGCCTTCTAGTGATGCTATATATCTGAATCTTGTAAAAAGTTCTTAATG TGAAGTTATGGGATGGGAATTTCATTTTGTTTACTAACAAGTTAATAGGTGGGCCAGACATATTTGGTATTTGAAGATTT GGTGACGCCAGATAATGGTTTGCAATTGCTTGTTTGCTTTAGATTGTTGATAATTGAATCCACATTAGAGATTTGACAGG TTTTTGAACTCTGATATCTGTTGTGCTGTTATGCATCTGCATAAGTTGTTTGAATGGCTGCATTGAGCTGCATCATACAC CACATCAATTACCAACTTGCTGCACCATTTTCAATTGGTAACACTTAGGTGATATGGTTGGTTTGGGTATGTGCGGATAA GACTTGTAGAGGTCCCTATAAGGAGAGCCGATTATCTAAAAGCTAGTCCAATAATTACAGATAGAGGAGATCATAGGGTC TCTTGATTCATTTAGTTGATTTGACCTTATAGGAAAAGACTTCTTTTGTTGTTGTGATGGTGTAGATGGTATGGTTGGGT ACGAATTTGAGAGTAGTCAGCTTAATTGATTTTCTCCATCAGTTGTTTAATGTCAGCACAAGTGAGTACTTCCTTTTGGT GTTTCTTAGTTTTTCAATCAAAAGAAAGGAGCATATGCATTACAATGCTGCTCTCAAGCTTGGCTTCGCTGTTATAGATT TCCTGTGTTGTCTTTTTTTCTTCAATTTTTAAAAGCAAACCATGTCAATATGATGGAGAAATGCATTATTGGTTGTTCAA TTACATGTTTAATCATTAACATAAATACTGATAAAAGGAAATTCTATTTGATTGAAGGTTTACAAGAGATATCATTGAAG GGGAATGGAAATGCGAGAGCAATGAGTATGGTCTTTGATATCAGTGGGAGATCAATTTAAATAACCCTCTTGCACACGAG AGAGACTTTTCTATTGAGTATCAGTGTGCTGGAGAGTGGAGACTGGAGACCACTGACTCATTGGTTCTAAGTTCTAACAT TGTTTGTAACTTCATCAACAAAGAACTCAACCAAAACTTTATCAACTAATAATCTTACTGTCTTTAGTTTTTTATACTCT TCAATGGTTCTTCAGCCCGCGCTTATGTTATGCTTTAATTTTAAAGTGGAAAATTGAGTTGACTCATATTGCAGGATATA TGATTATCTTTTCCCCCTGTATTGAGAAATTCTTGAATGACTTGAACTGTGAACTTCCACTCACGTTTTCAGAAATACTT CAATTAATTGTTTTTACCTCCTTTTCTATAAAAAGTAAAAAATCAAAATCCATGGAGCTTTACTGAGAATTTTACAAGAC AGGGTAGGGTTGTCCCGGACAGCAGGAGTCACTATCTGATTCGGTTTCCAGTTAAAAGGTGAACTTAATGCCAATAATCA AAAATCTTTATCTGGTCAACAATTATCTAACAAAGTGATTCTGAGTTTTCTTCCACGGTAAGCCAATAAACTGAACTTCA AAAGTTGCCACATGAACAAGAACAAACACAGAGCTACCTGACCCACCACCTTTTGCTACTGAAGTAGACAAAACAATAGT ACACCATATTGATTATTGGGTTTGAAAATCTTAATGACAGTAATGTAATTACCTAATAATGAATGCAATGCATCACATTA GTGTTGGAGTTGGAGACACTAAAATCTTTGCCAAAAAATTCCCAAACATGACATAAAA
CDS sequence (LotjaGi1g1v0743400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGTTGCAAGAACGATGAACAGAAATGGCGTGGTTCCTTGGATGAAGCTCCAATGGCGGGGCATAGCGAAAGTGCG TTTGAAGTGGGTGAAGAATCGAAGCCTCGACCACATCATCGACAAGGAAACCGATCTCAAAGCCGCTTCCCTCCTCAAAG ACGCAATCAACCGTTCCTCCACCGGCTTCCTCACCGCAAAGTCCTTCTCCGGCTGGCAAAAGCTTCTCGGCCTCACCGTC CCCGTTCTCCGCTTCATCCGCCGCTACCCCACCCTCTTCCACGAGTTCCCTCATCCTCGCTGGCCCTCCCTCCCCTGCTT CCGCTTAACCGACACCGCACTCCTCCTTCACTCTCAGGAGCAATCCCTCCACAACCACCACGAAAACGACACCGTTGAGA GGCTCTCCAAGTTCCTCATGATGACGAAAACCCGCACTGTTCCCCTTGTCTCCCTCTACCCTCTCAAATGGGACATTGGT TTGCCTGATTCCTTCGAGAAAACCCTAATCCCCAAATTCCCTGACCAATTTCAATTCGTTAAGGCCCCCAACGGCGTCTC CGCGGTGCGATTATCCAAATGGTGTGAGGAATTCGCGGTCTCCGCATTGCAGAAGAGCAATGAGCGTGACGGTGGTGATG ATGGGTATAGGGACTTCAAGAGAGGGAAGGCGGCGCTGGTGTTTCCGATGAGGTTTCCGAGGGGTTACGGGGCGCAGAAG AAGGTGAGGTTTTGGATGGATGAGTTTCACAAGCTGCCTTACATTTCACCCTATGCTGATTCCTCTAAGATTGATCCAAA CAGTGATTTGATGGAGAAGCGTGTTGTTGGGGTTCTTCATGAGCTTTTGAGTTTGACTATGCACAAGAAAACCAAGAGGA ACTACTTGAGAAGCTTGAGGGAGGAGTTGAATCTTCCTCACAAGTTTACCAGGATTTTTACTAGGTATCCAGGGATATTT TATCTCTCATTGAAGTGTAAGACGACGACGGTTACTCTCCGGGAAGGGTATGCCAGGGGAAAGCTTGTGGACCCTCATCC TCTTGTTCGCCATAGAGACAAGTTCTACCATGTCATGAAGACGGGGCTTCTTTATCGCGGTGATGGCTCAATCCCCAAAC CTGAGGGTGGTGCTTTGCTGCTTGATGAAATAGGGGATGAGGGTTCTGAGGAGGAAGAGGTTGAAACAAGTGATGAATTC TCCGAGGGTGAAGTTTCAGGGTCGGATAGTGAATGA
Protein sequence (LotjaGi1g1v0743400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVVARTMNRNGVVPWMKLQWRGIAKVRLKWVKNRSLDHIIDKETDLKAASLLKDAINRSSTGFLTAKSFSGWQKLLGLTV PVLRFIRRYPTLFHEFPHPRWPSLPCFRLTDTALLLHSQEQSLHNHHENDTVERLSKFLMMTKTRTVPLVSLYPLKWDIG LPDSFEKTLIPKFPDQFQFVKAPNGVSAVRLSKWCEEFAVSALQKSNERDGGDDGYRDFKRGKAALVFPMRFPRGYGAQK KVRFWMDEFHKLPYISPYADSSKIDPNSDLMEKRVVGVLHELLSLTMHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIF YLSLKCKTTTVTLREGYARGKLVDPHPLVRHRDKFYHVMKTGLLYRGDGSIPKPEGGALLLDEIGDEGSEEEEVETSDEF SEGEVSGSDSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 409 | 394 | 2.7E-212 | – | |
| PANTHER | 16 | 409 | 394 | 2.7E-212 | – | |
| Pfam | 31 | 362 | 332 | 1.4E-114 | ||
| MobiDBLite | 384 | 411 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0743400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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