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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0744600 |
| Transcript ID | LotjaGi1g1v0744600.2 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Short-chain dehydrogenase/reductase; TAIR: AT4G03140.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|F1SWA0|ZERSY_ZINZE Zerumbone synthase; TrEMBL-Plants: tr|A0A072UF24|A0A072UF24_MEDTR Short-chain dehydrogenase/reductase; Found in the gene: LotjaGi1g1v0744600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131797450..131802502) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGAGCATCAATCTACAAATACAATACCCCAGTGTGTTTGTCTGCATCAGAGCCACTTTACTGCAGAAAATCATGTTA AGACTTGGTTTGAGGTTGGTTTCAACTTTCATAATTCATTCTTCTGCCTCCATCTGTTTTCAGATTGCTGATTCAAAAAA TTTATAGGATGTTCTGCTTGTGCTTTCCACAATCTTTTTAATTAATAATCTTTATGTGATTGTAACATTTTGGTTTAAGG AAATGGCTATGGATTTATTTACTAGTCCACCACTTTGTAGGGTGGATGAATGGTAGATAGGGTTAACAACTAGGTTAATG AAATGATTGATTGTTTAATTTTGTATTCTTTGAACCTTCTTGCATCTGGATTTTCCTTTCAATTCTTTGATAATATGTGA ATAATACTCTGCGTTTCTGGTAAAAGCAGTCAAAAGGCTTGCTACTCAAGGTCTTCGGTTGCTGAGAGCTTCCACAGGTT ATTGTCTACTCAGACTGGAAGGTATGGCATTGTTATCCTTCTGTTTATCTTGTCTCTGATTTACTTTTCCTTTTCCTGTT TCGAGAGTGAACTTGAATATAACAATCCTATACTTGATTCCAAGTTTTGAAAGAAAAAAGTAGTATGTATTATTGATTCC CTATGAAAGTTGAATTTTACTGTTTCTATAGCATAAATTCCTGATGCATGATTGATGAGTTCCAAATTTTTTGTCCAGTC GCTTTTACTAGTCACACTTATAAATTGTAGTTTAATATCTCTGTATGTTAAATAGGAATTTCAATTTGTAGGCTAGTTCT TCAACTCTTTCTCCTTGCATTATATTGCTGTATATGTAGGGACAGAACTACCTACAGTAAAAACAGGGCAATCACCCCCT AAGAGGAAAAAAAATCATCACAGAACAGTATTCACATGTTGTATTTGTTCTCCGTAAAATTCTTACACTGCATCATCTAA TTAGCCATTATTGATTTTGCTAAATATGTATTAAATTTTCGCTCCTCTTATCACTTCTTTTCTGTTCTGTTCTTAAGTGA ATGCACAAGGAGAAGAGAGTGTTAGGGATCAAAATATTGAAAGGTCACTTGGAAGGTAAGGTCTACACTAGGAGGAAGAT GCATGGGCATGGTTTGACGGAGGGCCTGACTAAACTTGCACCGCCCCTGGACCACCAGGACAATGTGCCGAACCAAGTTT AGACTTATTACTCCTAGTGTAGACCTTACAAACAGCCCTTTCAATATTTTGATACCTAACGGACAGTAAAGATAACAATT ATTAGTTACATACTGACACATACAAGTCTTTCATGGTCCTTAGAACTTAGAAGACTGCACAACCATTTAGTCCTGAACTT CAGCATACTGAAAATGTTATAAAAAAAGATCTTTGTTGTTTATGCTTTTAGTTCAATTTTGATGTGGTGATTCAGGAAGC TACAAGACAAGGTAGCATTGATCACCGGGGCAGCTAGTGGAATAGGAAAAGCTGCAGCAACAAAATTTATCAACAATGGA GCCAAGGTTATTATTGCTGATATCCAACAAAAACTTGGCCAAGAGACTGCGAAAGAGCTAGGACCTAATGCCACCTTCAT AACATGTGATGTCACAAAAGAGTCAGATATATCCAATGCTGTTGAGTTTGCTATTTCTGAATACAAACAGCTTGATATCA TGTACAACAATGCAGGAGTACCCTGCAGAACTCCTGGAAGCATTGTTGATCTGGACCTGGCATCTTTTGACAGAGTCATG GATATAAATGTTCGTGGGGTTATGGCGGGCATCAAGCACGCAGCGCGCGTAATGATCCCGCGTGGAGCCGGGTCCATTCT CTGCACAGCCAGTGTCACTGGAGTGATGGGAGGGTTGGCTCAGCACACATACTCAATCTCCAAGTTTACAGTCATAGGCA TTGTTAAATCTCTGTCTTCAGAGCTGTGTAGGCATGGAATCAGAGTCAATTGCATATCACCCATTGCTATACCTACTTCT TTTGTCATGGATGAAATGAGTCACATTTATCCACATCTTGATGCTCAGAAGCTTGTAGACATTGTTCATAATACCGGTGT CCTTAAGGGAGCAAATTGTGAACCCAGTGATGTTGCCGACGCTGCACTTTATCTTGCATCTGATGATGCCAAGTATGTTA GTGGGCATAATTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATCTTGAGTTTCCTGCACCAGATAAAGTACATTAG AAGATTTTCCAATTTATAGAATGTAATAGTGATTCAAATCATCTTCCAATTTTTCAATTTTTAACTACTTAGTTACTCAA GGTGACAGATCATTATGGTATCATTTTTTTCATGTAAAACTCACTCCACCTACTCAAAAAGACTCGGTGGCTTAGTTTTC TTTGAGGATCTAGTAAAACCTGCGCGCGCATCTCTTTGCTGGATTGCCATTCTAGTGACATAGATGAAATTTCTAGGACT ATTGTTTTGGTAACTCAGAATGTTACAGAAACAATGTAGCATAGCATTCAATTTTGAGGCGTGTAAACAGCATCAAGCCA GGTCCCATGTTCTCAAGTCTCAAGGCATGCTAAATATGCATGACAGCATTAGGAATACATATCTTATTGTTCTGTATTTT TATTTACAGGTTGTAAGGGAATGTGAAAGAGATAGAACTATTGTCGACTTTCACTTGAATTTGGTTCCATTTCCACCGAA GATGCACTTGCAAGGATCATCCTGCTTCTGGGAAGAATCTACCCAGGCATTCATATTGCAGATCTTCCCCTGAGATTGTA TGTACAAGAGCTTTTACTCTTTCTATTGAACTAAGGAAAAATGGGCATGTTGTTAATAACATAAGAAAGCCACTTTGGTT TCTGCATATTATATATCAATATATCACTACAGTAGTTGGTTTAAAACTGGCAACCCTGGTTTTGCACCAGAGACAAGTGC ATTTCCTGCTCAACCAACACAAATTCTTTCCTCGGAATTGCAGTACTATATGATGCTTCTCATTTGCAACTTGCCCCCCC ATTCAGCCCAAGCAAATGTTTTAATTGTAAATACTTAAAAACACAGTAACTTCCAACTACCTTTGCCTGTTTAGTCTCCT GCTGCTCTTGTTAGAACAACTTTATCCAACTTAATGGTCAAGAACCACATCCTGTGTGAAATGGGTTGAGCCAGAAAGAT TCTTTACAGACAGAATAAACACATGACAATCTGTCCTACATGGCCGTCGTTTCAGGTCCTTCATCATCTTCTCAATGATG CAAGAATACGATCCTTCATATTTACCTTTAGACTTTAGTGTGTACTGTAAAAGATGCTTATAGTAGTGTTTGAAAAGATA ACAAAAGCTTTGATTCACAGACCACATCATGGTTCCCATTCTACATCAATCTTATTGCATCGTCTGTTGTCATGATAAGA AGCCTCACAGTCGATATTGTAAACCATCAGCATCTTTACGATGGCGTTACAGCACCAGAAGGTGCTTCAACAAAGAATAC TTAAATAAGAGGAATCTGTCAAATGATTGAAATTAAATAACAACCACTGCACAAATCCAGGTCATATTGATTTATACCAC AAAAAATAAATCAATTTGAGTCTGTGTAAGGAAACCTCAGCAAAATCATTGGTTTCCATTGCTTAAAAACCTATATAGTT CTCATGTTTTAACAAGATTTATCCCTGCTTTTAGAAAAACGGCTACGCAGTCCAGGAGAGTTCAAAAGGAATGAGAAGAA TCCCATACTCCTATTCTACTTAAGGACCCTCTCCACTTAACCGTGCTAGATCTAGCATGGCTACACAACTTTTATCAAAT CATACTTCCAGCAAAGTTATAGAAAATGGCAAGATCAATTTCTGTTATTATCCATTCTTAATCAAGATTTGTCTATGAAT CCACTAATTATACAAAACAAATTAAGGTTTGTGTGACTATAAATTGTTGATCCGGTGATCCCTATCTCTGGTAAAAGAGC TCCAAATAGTATAATTTGCATATGCCGCTTTATGGGATTCATTTCAATTTGCAGTAACCCAAGAAAAAAAAATTGATCAC AAGATCTGATACAGAAACAAAATACAGAAGATCTCTAAACTAAGGAAGAAACAAGATTGTATACTATATGCAATAGGGGG CAGTAAAATTAAATACCATTAGTAGCATACTATATGCAATACTAGAATAATCAAATTCAATTTCACTGACAAAACTGTTC TACCCGTTGGGCAATGAGGTCAATAGCAGCATTAGCTGATGAGAATGCCCCATGAAAACTTTCCTTATAAGAAATTGACT CCAATTCACGGGCCATCTTCAACAAAATCCCTCCCAAGTCTGTTTGCTTCTGCAGCAAACAATTATAGTACGTTTTGGCA GCAACTCTGCTTATCTCAACATTGGTTTCCTCTGGACAGTACTCATCATCCAACCATTTATGTAAAGTAACCCTAAGCCA CTCTGATTCCTGATAATTGAAAAACAAAAACACAAAGCTAAAATACTTCAACCCCTTCAATTCAAAAATTGCCAAAATAG AAATTGATACCAATTTTGGAATGAAGGAGCAAAAGGGGTACCTGCAAGGCCATGTTTGGGGCTAACCATTGGTCAGGAAC CCTAAGGTCTTCAACTTGGTCTTCAGGTTCTGGGAATGGATGAGGATGGGACCTGACCAGAGTGGGGGAATTGGTACGAG TGTGATGAAGAATTGGTGAAGAAGAAACATGGTGGTGAGTCAGAGAAGAGGGTGTTCCAGTGAAGGGATAGGTGGTCAAT GAGTTGAAACAAGTGAAGCGTGGACGCAGAATCATGGGCTGACCCAGATTCAAGGTTGTCATCGTAGACAGTGTAGAGAG GTTAACAGAGACAGGGAGAAACCACCAATATTGTTTTTTTGGTCAAAGGCAACTACCAATATGAACCATTCATTCAGAAA CTTGTACCTTTTGGATGAGGCCTTCTCCACTAGGAGGAGGATAATGTAATTATTTTGAAATACTAATGCATGTCTTAATA TACAGTGAAAAAT
CDS sequence (LotjaGi1g1v0744600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAAGACTTGGTTTGAGCAGTCAAAAGGCTTGCTACTCAAGGTCTTCGGTTGCTGAGAGCTTCCACAGGTTATTGTC TACTCAGACTGGAAGGAAGCTACAAGACAAGGTAGCATTGATCACCGGGGCAGCTAGTGGAATAGGAAAAGCTGCAGCAA CAAAATTTATCAACAATGGAGCCAAGGTTATTATTGCTGATATCCAACAAAAACTTGGCCAAGAGACTGCGAAAGAGCTA GGACCTAATGCCACCTTCATAACATGTGATGTCACAAAAGAGTCAGATATATCCAATGCTGTTGAGTTTGCTATTTCTGA ATACAAACAGCTTGATATCATGTACAACAATGCAGGAGTACCCTGCAGAACTCCTGGAAGCATTGTTGATCTGGACCTGG CATCTTTTGACAGAGTCATGGATATAAATGTTCGTGGGGTTATGGCGGGCATCAAGCACGCAGCGCGCGTAATGATCCCG CGTGGAGCCGGGTCCATTCTCTGCACAGCCAGTGTCACTGGAGTGATGGGAGGGTTGGCTCAGCACACATACTCAATCTC CAAGTTTACAGTCATAGGCATTGTTAAATCTCTGTCTTCAGAGCTGTGTAGGCATGGAATCAGAGTCAATTGCATATCAC CCATTGCTATACCTACTTCTTTTGTCATGGATGAAATGAGTCACATTTATCCACATCTTGATGCTCAGAAGCTTGTAGAC ATTGTTCATAATACCGGTGTCCTTAAGGGAGCAAATTGTGAACCCAGTGATGTTGCCGACGCTGCACTTTATCTTGCATC TGATGATGCCAAGTATGTTAGTGGGCATAATTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATCTTGAGTTTCCTG CACCAGATAAAGTACATTAG
Protein sequence (LotjaGi1g1v0744600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRLGLSSQKACYSRSSVAESFHRLLSTQTGRKLQDKVALITGAASGIGKAAATKFINNGAKVIIADIQQKLGQETAKEL GPNATFITCDVTKESDISNAVEFAISEYKQLDIMYNNAGVPCRTPGSIVDLDLASFDRVMDINVRGVMAGIKHAARVMIP RGAGSILCTASVTGVMGGLAQHTYSISKFTVIGIVKSLSSELCRHGIRVNCISPIAIPTSFVMDEMSHIYPHLDAQKLVD IVHNTGVLKGANCEPSDVADAALYLASDDAKYVSGHNLVVDGGFTSFKNLEFPAPDKVH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 12 | 296 | 285 | 1.0E-145 | – | |
| PANTHER | 12 | 296 | 285 | 1.0E-145 | – | |
| Gene3D | 25 | 291 | 267 | 2.2E-74 | – | |
| SUPERFAMILY | 35 | 285 | 251 | 3.66E-73 | ||
| PRINTS | 38 | 55 | 18 | 2.4E-32 | ||
| Pfam | 43 | 285 | 243 | 6.5E-62 | – | |
| PRINTS | 109 | 120 | 12 | 7.6E-7 | ||
| PRINTS | 109 | 120 | 12 | 2.4E-32 | ||
| PRINTS | 158 | 174 | 17 | 2.4E-32 | ||
| PRINTS | 164 | 172 | 9 | 7.6E-7 | ||
| PRINTS | 184 | 203 | 20 | 2.4E-32 | ||
| PRINTS | 184 | 203 | 20 | 7.6E-7 | ||
| PRINTS | 205 | 222 | 18 | 2.4E-32 | ||
| PRINTS | 248 | 268 | 21 | 2.4E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0744600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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