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LotjaGi1g1v0744600.6

Overview

Field Value
Gene ID LotjaGi1g1v0744600
Transcript ID LotjaGi1g1v0744600.6
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Short-chain dehydrogenase/reductase; TAIR: AT4G03140.1 NAD(P)-binding Rossmann-fold superfamily protein; Swiss-Prot: sp|F1SWA0|ZERSY_ZINZE Zerumbone synthase; TrEMBL-Plants: tr|A0A1J7IKQ1|A0A1J7IKQ1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0744600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:131797860..131799689) extracted from Lotus japonicus Gifu genome v1.2.

GCGTTTCTGGTAAAAGCAGTCAAAAGGCTTGCTACTCAAGGTCTTCGGTTGCTGAGAGCTTCCACAGGTTATTGTCTACT CAGACTGGAAGGTATGGCATTGTTATCCTTCTGTTTATCTTGTCTCTGATTTACTTTTCCTTTTCCTGTTTCGAGAGTGA ACTTGAATATAACAATCCTATACTTGATTCCAAGTTTTGAAAGAAAAAAGTAGTATGTATTATTGATTCCCTATGAAAGT TGAATTTTACTGTTTCTATAGCATAAATTCCTGATGCATGATTGATGAGTTCCAAATTTTTTGTCCAGTCGCTTTTACTA GTCACACTTATAAATTGTAGTTTAATATCTCTGTATGTTAAATAGGAATTTCAATTTGTAGGCTAGTTCTTCAACTCTTT CTCCTTGCATTATATTGCTGTATATGTAGGGACAGAACTACCTACAGTAAAAACAGGGCAATCACCCCCTAAGAGGAAAA AAAATCATCACAGAACAGTATTCACATGTTGTATTTGTTCTCCGTAAAATTCTTACACTGCATCATCTAATTAGCCATTA TTGATTTTGCTAAATATGTATTAAATTTTCGCTCCTCTTATCACTTCTTTTCTGTTCTGTTCTTAAGTGAATGCACAAGG AGAAGAGAGTGTTAGGGATCAAAATATTGAAAGGTCACTTGGAAGGTAAGGTCTACACTAGGAGGAAGATGCATGGGCAT GGTTTGACGGAGGGCCTGACTAAACTTGCACCGCCCCTGGACCACCAGGACAATGTGCCGAACCAAGTTTAGACTTATTA CTCCTAGTGTAGACCTTACAAACAGCCCTTTCAATATTTTGATACCTAACGGACAGTAAAGATAACAATTATTAGTTACA TACTGACACATACAAGTCTTTCATGGTCCTTAGAACTTAGAAGACTGCACAACCATTTAGTCCTGAACTTCAGCATACTG AAAATGTTATAAAAAAAGATCTTTGTTGTTTATGCTTTTAGTTCAATTTTGATGTGGTGATTCAGGAAGCTACAAGACAA GGTAGCATTGATCACCGGGGCAGCTAGTGGAATAGGAAAAGCTGCAGCAACAAAATTTATCAACAATGGAGCCAAGGTTA TTATTGCTGATATCCAACAAAAACTTGGCCAAGAGACTGCGAAAGAGCTAGGACCTAATGCCACCTTCATAACATGTGAT GTCACAAAAGAGTCAGATATATCCAATGCTGTTGAGTTTGCTATTTCTGAATACAAACAGCTTGATATCATGTACAACAA TGCAGGAGTACCCTGCAGAACTCCTGGAAGCATTGTTGATCTGGACCTGGCATCTTTTGACAGAGTCATGGATATAAATG TTCGTGGGGTTATGGCGGGCATCAAGCACGCAGCGCGCGTAATGATCCCGCGTGGAGCCGGGTCCATTCTCTGCACAGCC AGTGTCACTGGAGTGATGGGAGGGTTGGCTCAGCACACATACTCAATCTCCAAGTTTACAGTCATAGGCATTGTTAAATC TCTGTCTTCAGAGCTGTGTAGGCATGGAATCAGAGTCAATTGCATATCACCCATTGCTATACCTACTTCTTTTGTCATGG ATGAAATGAGTCACATTTATCCACATCTTGATGCTCAGAAGCTTGTAGACATTGTTCATAATACCGGTGTCCTTAAGGGA GCAAATTGTGAACCCAGTGATGTTGCCGACGCTGCACTTTATCTTGCATCTGATGATGCCAAGTATGTTAGTGGGCATAA TTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATCTTGAGTTTCCTGCACCAGATAAAGTACATTAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0744600.6) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTACAACAATGCAGGAGTACCCTGCAGAACTCCTGGAAGCATTGTTGATCTGGACCTGGCATCTTTTGACAGAGTCAT GGATATAAATGTTCGTGGGGTTATGGCGGGCATCAAGCACGCAGCGCGCGTAATGATCCCGCGTGGAGCCGGGTCCATTC TCTGCACAGCCAGTGTCACTGGAGTGATGGGAGGGTTGGCTCAGCACACATACTCAATCTCCAAGTTTACAGTCATAGGC ATTGTTAAATCTCTGTCTTCAGAGCTGTGTAGGCATGGAATCAGAGTCAATTGCATATCACCCATTGCTATACCTACTTC TTTTGTCATGGATGAAATGAGTCACATTTATCCACATCTTGATGCTCAGAAGCTTGTAGACATTGTTCATAATACCGGTG TCCTTAAGGGAGCAAATTGTGAACCCAGTGATGTTGCCGACGCTGCACTTTATCTTGCATCTGATGATGCCAAGTATGTT AGTGGGCATAATTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGAATCTTGAGTTTCCTGCACCAGATAAAGTACATTA G
Download CDS Sequence

Protein sequence (LotjaGi1g1v0744600.6) extracted from Lotus japonicus Gifu v1.2 Proteins.

MYNNAGVPCRTPGSIVDLDLASFDRVMDINVRGVMAGIKHAARVMIPRGAGSILCTASVTGVMGGLAQHTYSISKFTVIG IVKSLSSELCRHGIRVNCISPIAIPTSFVMDEMSHIYPHLDAQKLVDIVHNTGVLKGANCEPSDVADAALYLASDDAKYV SGHNLVVDGGFTSFKNLEFPAPDKVH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43180:SF28
1 183 183 2.4E-95 –
PANTHER
PTHR43180
1 183 183 2.4E-95 –
Pfam
PF13561
1 172 172 2.6E-39 –
Gene3D
G3DSA:3.40.50.720
1 177 177 3.9E-44 –
SUPERFAMILY
SSF51735
2 172 171 7.02E-44
IPR036291
PRINTS
PR00081
45 61 17 4.0E-18
IPR002347
PRINTS
PR00081
71 90 20 4.0E-18
IPR002347
PRINTS
PR00081
92 109 18 4.0E-18
IPR002347
PRINTS
PR00081
135 155 21 4.0E-18
IPR002347

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0744600.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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