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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0745000 |
| Transcript ID | LotjaGi1g1v0745000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease H protein; TAIR: AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein; Swiss-Prot: sp|P0C2F6|RNHX1_ARATH Putative ribonuclease H protein At1g65750; TrEMBL-Plants: tr|A0A151TKM0|A0A151TKM0_CAJCA Putative ribonuclease H protein family; Found in the gene: LotjaGi1g1v0745000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131826034..131827124) extracted from Lotus japonicus Gifu genome v1.2.
GCAGAACCCATCAAAAACCTTCGAACAAGTCTGGAAGTATAAAGGCCCACCCCGTGTCCAATGCTTCCTTTGGAAATTAG CTCATGCACGCTTACTGACAAACTATGAATGAATGAAACGAAACATGACTAATTCTTCTGTCTGCCCGAGATGCCTTCAA ACAGATGAATCAATCATGCATGCCATTAGAGACTGCCCTTATGTCCAAGAAACATGGAACTATTTCCTACCAGCTAGAGA TTGGAGCAGATTCTATAGCCAAGGACTCTCCAACTGGCTTGAATCCAATCTCAAAATGAGTAATGTCCACAAGGAAGGTA TTAAATGGAATATTCTCTTTGGAATCACTGCTTGGCAAATCTGGAAAGACCGGTGTGACCTTATCTTCAACAACCACATC ACTATGCCGGGCAATCTCTCAATTATAATCTCCAACTATGCAATAGAGGTAACTAAAAACGTATCCCTTATGGATAACAT CCTAAGTTCTCCTCTCAATGACAACCCAGAAACCTGGTCCAAACCGGCTTTTGGCGTGTGGAAATTGAACACGGATGGCT CTTTCAGGCACCAAAACTCCACTTCTGCATGTGGGGGTCTGATTCGTGATTGGAATGGTAGCTTGATCAGAGGCTTCTGC TGCAAAATTGCTGAAGGGAACCCGCTCAAAACTGAACTGGTTGGGGTAGTGAAAGGCCTTGAAGTTGTCCAGGATCTCCA GCCCAAAGACTTGGAAATTGAAGTTGATTCAAAGGTAGCTGTGGAACTAATTACTATCAACTGCCTGAGGGACCACCATT GCTACAGGATAGTTGAGCGGATTCACAATCTAGCTTCAAGACTGGTGAAGGTCACTTTCCACAACATAAACAGGAAGGCA AATATGAGTGCAGACAAATTAGCCAACATGGGACATCAAGCCCAAAACTTAGTTTTCAATGGAGACATATGCTTAGAAAT GATGCTAGAGTTTCTAGCTCCTGTTAGTTCTCGGGCTTAAGCCCTCTACTTTATCAAAAAAAAAAAAAATAGATACAGTT TACCAATCTCAATCGCTTACCGATTTTAATCGGGCTGGACAACTTAACTTT
CDS sequence (LotjaGi1g1v0745000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGAAACATGACTAATTCTTCTGTCTGCCCGAGATGCCTTCAAACAGATGAATCAATCATGCATGCCATTAGAGA CTGCCCTTATGTCCAAGAAACATGGAACTATTTCCTACCAGCTAGAGATTGGAGCAGATTCTATAGCCAAGGACTCTCCA ACTGGCTTGAATCCAATCTCAAAATGAGTAATGTCCACAAGGAAGGTATTAAATGGAATATTCTCTTTGGAATCACTGCT TGGCAAATCTGGAAAGACCGGTGTGACCTTATCTTCAACAACCACATCACTATGCCGGGCAATCTCTCAATTATAATCTC CAACTATGCAATAGAGGTAACTAAAAACGTATCCCTTATGGATAACATCCTAAGTTCTCCTCTCAATGACAACCCAGAAA CCTGGTCCAAACCGGCTTTTGGCGTGTGGAAATTGAACACGGATGGCTCTTTCAGGCACCAAAACTCCACTTCTGCATGT GGGGGTCTGATTCGTGATTGGAATGGTAGCTTGATCAGAGGCTTCTGCTGCAAAATTGCTGAAGGGAACCCGCTCAAAAC TGAACTGGTTGGGGTAGTGAAAGGCCTTGAAGTTGTCCAGGATCTCCAGCCCAAAGACTTGGAAATTGAAGTTGATTCAA AGGTAGCTGTGGAACTAATTACTATCAACTGCCTGAGGGACCACCATTGCTACAGGATAGTTGAGCGGATTCACAATCTA GCTTCAAGACTGGTGAAGGTCACTTTCCACAACATAAACAGGAAGGCAAATATGAGTGCAGACAAATTAGCCAACATGGG ACATCAAGCCCAAAACTTAGTTTTCAATGGAGACATATGCTTAGAAATGATGCTAGAGTTTCTAGCTCCTGTTAGTTCTC GGGCTTAA
Protein sequence (LotjaGi1g1v0745000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRNMTNSSVCPRCLQTDESIMHAIRDCPYVQETWNYFLPARDWSRFYSQGLSNWLESNLKMSNVHKEGIKWNILFGITA WQIWKDRCDLIFNNHITMPGNLSIIISNYAIEVTKNVSLMDNILSSPLNDNPETWSKPAFGVWKLNTDGSFRHQNSTSAC GGLIRDWNGSLIRGFCCKIAEGNPLKTELVGVVKGLEVVQDLQPKDLEIEVDSKVAVELITINCLRDHHCYRIVERIHNL ASRLVKVTFHNINRKANMSADKLANMGHQAQNLVFNGDICLEMMLEFLAPVSSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 269 | 268 | 7.5E-44 | – | |
| PANTHER | 2 | 269 | 268 | 7.5E-44 | – | |
| ProSiteProfiles | 139 | 269 | 131 | 12.44 | ||
| SUPERFAMILY | 142 | 269 | 128 | 4.81E-15 | ||
| Gene3D | 143 | 274 | 132 | 2.9E-19 | ||
| CDD | 145 | 265 | 121 | 6.27109E-30 | – | |
| Pfam | 146 | 267 | 122 | 9.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA-DNA hybrid ribonuclease activity | Catalysis of the endonucleolytic cleavage of RNA in RNA-DNA hybrids to 5'-phosphomonoesters. |
Expression pattern of LotjaGi1g1v0745000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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