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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0746000 |
| Transcript ID | LotjaGi1g1v0746000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Zinc finger constans-like protein; TAIR: AT2G47890.1 B-box type zinc finger protein with CCT domain-containing protein; Swiss-Prot: sp|O82256|COL13_ARATH Zinc finger protein CONSTANS-LIKE 13; TrEMBL-Plants: tr|G7KQZ2|G7KQZ2_MEDTR Zinc finger constans-like protein; Found in the gene: LotjaGi1g1v0746000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131916216..131920548) extracted from Lotus japonicus Gifu genome v1.2.
TCAACCATGATGTAGTCCATGCATTTTGTTTAAAGGATAATATAAAAGTGAACCACTTTTTCAAGCAGTCCTTGCTCTCC AAGGAAGGATTCATTCATGAATATCTACTCCAACAACAACAACAACAACAACAACAACAACAACACACACATGCCACATT CTCCTCTTCACCACTCTGTTCCACCCACCTAACTTTTTCTTCTCAGATCTCTTCTCTTCTCTTCTCTTCTCAGATTTCAA CAACTTCTCTGAACTCTCTCTCTCTCTCTCTCTCTCTCTCAATGGGTGGTTCTCCGAGAAACCCACAACCAAAAGATGAA GAAGAAGCACCACAGCTTGTGCGACCCTGTGACTACTGTGGTCACTCCACAGCAGTTCTCTACTGCAGAGCTGATTCAGC GAAGCTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAACCAGCTTTTCTCAAAGCACACTCGCACTCTCCTCTGTG ATGCCTGCGATGATTCCCCTGCCACCATACTCTGTTCCACAGACTCCTCTGTTTTCTGCCAGAATTGTGACTGGGAGAAA CACAACCCTTCGCTTTCTTCTGTGCACGAACGGAGGCCCCTTGAAGGGTTCACGGGGTGCCCTTCGGTTACTGAGCTCTT GTCGATTATGGGGTTTCAGGATTTGGGGAAGAAAGAGCTTTTTGATTCGAGTGGTGTTGCTGGGAAAACAGAGGATGGGT TTCTGGGGTGTGAGATTGAAGGGCTTTCTGATTTGTTCGTTTGGGATACTCCTTCTGTTTTTAGTCTTGATGATTTGATT TCTTCTTCTGGTTCTTCTCATAACTTTCAGGCTATGGAGGTTCCTCCTCTACCCAAGGTATATTTTGTTCCCTTGTTTGG ATGCTGAGAAAACAGAAAATGCAATAGGAATTCATTTCCCCTTTTGTAGGAATTGGGGTTCTCTTATAGGTTCAGCTCTT GAATTTAAATTAGCCATGCTGGGATTTTGGGCTAAATTGTAATCCTGATAAGACTCTAAGAATTTATGTTTTTTTTGTTT CAATTTTGTTTTGGTTGTCTTCTAGGGATTTGGGTTCTTTTGATGTAAAAGAACACATGAAAATCTGTGTCTATTGCTAC AATTTTGACTTGTTTAGGGTATTGTGATTGATTAGAATCGTAAGGCTGCATGCGGGCGACACAAAGAAGAGATTCTTAAC CAGCTTCGCCAACTAACAAAGTCTGAGCCCTTGGATCTTGAGCAGTATGTGCCAACAGAAAATCTGTCCACAGGTTTTGA AGGTGAAATGGAGGCTGATATCTTTTCTTCCCATGAGGTAAAGCTTCTACTTTACCTGATAACGGGTTCTTGGTTTTATA ATAGCATGTTTGGATCAGCTTATCTTTCCTCAAAATTAATAGTGGAAACTGGCACCTTGAAGCTACTCACATAAGTTTCT CCTCAGAATTTTGGTTTTAGAATCTTTTTCAACCATCTAAATGTTTACCCTTGTGTCTGTATAACTGATGACTACTTGTA TATGTGGATAGGATTTGTGTTATATTCTCATTTTGATTTGTTCATCTGTCCTAAAGAATATCATGTGACTTTTGTGGAGG CTATCTTAATTTGTTAATGAGGAGATAGTTGAACCCAATTCATATTGTTTGGCAAGAAACTGTTTACATAACATTTGTAT ATATCTACTGGTATCTTAACTAACTTGCTCGGGCACTGGTAAAATGACCTTCGTGGTGCAATTTTTATACAACTTATTTT TAGTTGAATTATGAGTCCGCCCTCACTATGCTGCCTTATTGATGGTTATATCAGTGGCATAGAGAAAGCAATGAGACTAT GTATCAAGTTGTTCCTCTTGAATCGTCTTTGAGAACTTCTAACGAAGAAGTTTCAGTTAAACATTCTACTTCTGCTGGTG GGGAGGCTCATGCCTATGGCAATAATGAAGGTCAACCTTCAAATTCTATCAAGTCTGAAACCTTACCAACCACTCCTAGA CCTGTGCCATATGAGTTAGCGAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGAAGGTA CTGCTATTATGGCATCCTTTGCTTGTTTTTTTGTTTTGTTTTTGTGTGTGTGGTGTTTGTTTTTGTGTGTGTGTGTGAAA GAGAGATAAAGAGAGAGAGGTAACCATTCTAATGTTTAAATATGCTCATCTGAGACCGAGCCGCGTAATTTTTGATATGT TAAATTCTCACTACACTATATCCCAATTCTCTGGCATCTAACTCTATTGTTTTAGATTTATAAAGTTTTCTTTTCCATTT TTAAACTGGACAAACTTCAACACCTCATAGACATGAAGTTTTATAAATATTGGCCCAACATAGTTTGGTTGGATATATTC TAGGGATTTTCCTTTATGATGTAAGTTCTTTGAGAGATGTCCAGAATAAATTCGTACTATGTAACTTAGTTTTCTAAAAT TTATTGACTTAAAGAGTTCAGTTCAGGCTTCTCTGGAAAATTACTGTTGTTATTCTTAAATTTCTTGCCACCATTCACTG TGTGAACTGTGATTCTGTAGTTTATCATCTCCTCACAATTTTTAAACTCTTGTTGATTCAAATGACCTGCATATATGTGT GTGTGTGTGTGTAGGATCTTGATGATTTGTGTATATAAATTTTTAACTTTCCAAGATTTATTAAACTGACATACTTTATA TGGAAAACAACAGATATGAGAAGCACATAAGGTATGAATCACGAAAAGCTCGGGCAGAAAGCAGGATAAGAATTAGGGGC CGATTTGCCAAAATGGAACACTGAAATCATGGTAGGTTGCTATGACATCATAACCATTATTATTGGTTCATAGCACAAGT TTTGTAACACGTTCCTTTTTATAGTTAACTATATTTTGCGAGTGATGTATTGTTGGATTCCGAGCTTGGATAATGCAGAC ACGTATTCTTGCGATGACTTTGACAATGATTTATTTTCCTTAGCTCCAAAATTGCATCTGAGGAGGATTAAAAGGTGCAG TTTTCTTTAAATAAAAATCAAATTTACAGGGATCTTTGGCCTTAGATTGTGTTTGGAGGGGACGTGGTATCTGGTGTACT TACATATTTTATCCTTTTGATTCTCAAATGATACTCATAACTTGAGATAGCCTCTGGTCTCCTTTAGTCGTTCAAACGTT AGTGTTGAACATTCTATGGGAACAATGGGAAGCAACTGTATGTTTGAATTTACTGAGAATATAAAAGCTCAGCTTTTGAA GTGTTAGCTTAAGATTTGTAAACAAATTAATGAACTGTCTGCAATTGTTGTATCTTTTGTTGTTTGATCAGGGGTATATC TAGTGACAATGAAGTTGTATGTTGCCTTGTACATATCCATTCCCACGCCTCTGGAGTTACTGTTGGTCCTGTTAGGGAGT GATGAATCAGTCTCTATTGGATCTGAACTCAAATGAGCCTGCATGTTTTCTATCTCCTTTAAATTTACCTGAAATATGTG CTTCCATGTGCATGTTCGTTTTTTCTATTGAAACACTCTCAAACCAAGGTTTACCCCACCGCACCTAATGTCTTCCTTCC CATTCAGTGCATTGGAAAGCTCACATTTGTGGGGCAATGTGTAATAAAACACCCTCAAGTAGTTCAATAACAAATCAACA TGTGATGACATGTGCATAATCAGTAGACTAAACTGTCCAATTTATCACACTAAGTAGTCTGGTAAATACTGGAGTATGTA TAGATGAACAACATTATATTCTTATATAGAAAAGCAATTTAATCAGTTCTGTTCTTTATGTATGTTGAATGGACATACTA TGTTGATTGATTGAAGTGCATTAACATTTGGATTTTTTTATTTGTCCTAATTTCTCCTTATCTTGCCTACTTAAAGCATT AATTTCATGTGCCAGAGATATCATAAGCATCATGTACATACGGCGGGTGGACATGGAACATACAAGGAAGCATTTTGCAA GCTACTGCATTCTCCTGTTATGTTAGAAGCTGCAGCTTGGAAGTTTTTTTTTTAATACAAGAGCACTTGAAGTTAGTTGG TGTATAATGGAAATTCTATTTATTTTTTACAGTTAAATTAGTTTGGCCACTCCATGTGGCACTTGCACAGTTGCACTTAT GTACTATAAAGAACAGTAGTACTATCAATGAACAATTCTCATTTTCTGATCCATTCTATTCCTCTATCTCTTTATACTAC CCTATACCGAACATCTTCTAAATGCACCATTTTGTAGGAGCTTCAGTGCTGACCGAACTAAATTTGATAAAGTCAACTAG GTTTGGAGGACTG
CDS sequence (LotjaGi1g1v0746000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGTTCTCCGAGAAACCCACAACCAAAAGATGAAGAAGAAGCACCACAGCTTGTGCGACCCTGTGACTACTGTGG TCACTCCACAGCAGTTCTCTACTGCAGAGCTGATTCAGCGAAGCTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAA ACCAGCTTTTCTCAAAGCACACTCGCACTCTCCTCTGTGATGCCTGCGATGATTCCCCTGCCACCATACTCTGTTCCACA GACTCCTCTGTTTTCTGCCAGAATTGTGACTGGGAGAAACACAACCCTTCGCTTTCTTCTGTGCACGAACGGAGGCCCCT TGAAGGGTTCACGGGGTGCCCTTCGGTTACTGAGCTCTTGTCGATTATGGGGTTTCAGGATTTGGGGAAGAAAGAGCTTT TTGATTCGAGTGGTGTTGCTGGGAAAACAGAGGATGGGTTTCTGGGGTGTGAGATTGAAGGGCTTTCTGATTTGTTCGTT TGGGATACTCCTTCTGTTTTTAGTCTTGATGATTTGATTTCTTCTTCTGGTTCTTCTCATAACTTTCAGGCTATGGAGGT TCCTCCTCTACCCAAGAATCGTAAGGCTGCATGCGGGCGACACAAAGAAGAGATTCTTAACCAGCTTCGCCAACTAACAA AGTCTGAGCCCTTGGATCTTGAGCAGTATGTGCCAACAGAAAATCTGTCCACAGGTTTTGAAGGTGAAATGGAGGCTGAT ATCTTTTCTTCCCATGAGTGGCATAGAGAAAGCAATGAGACTATGTATCAAGTTGTTCCTCTTGAATCGTCTTTGAGAAC TTCTAACGAAGAAGTTTCAGTTAAACATTCTACTTCTGCTGGTGGGGAGGCTCATGCCTATGGCAATAATGAAGGTCAAC CTTCAAATTCTATCAAGTCTGAAACCTTACCAACCACTCCTAGACCTGTGCCATATGAGTTAGCGAGTCAAGAAAGGGAT TCTGCATTATTACGGTACAAGCAGAAGAAGAAAACAAGAAGATATGAGAAGCACATAAGGTATGAATCACGAAAAGCTCG GGCAGAAAGCAGGATAAGAATTAGGGGCCGATTTGCCAAAATGGAACACTGA
Protein sequence (LotjaGi1g1v0746000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSPRNPQPKDEEEAPQLVRPCDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRTLLCDACDDSPATILCST DSSVFCQNCDWEKHNPSLSSVHERRPLEGFTGCPSVTELLSIMGFQDLGKKELFDSSGVAGKTEDGFLGCEIEGLSDLFV WDTPSVFSLDDLISSSGSSHNFQAMEVPPLPKNRKAACGRHKEEILNQLRQLTKSEPLDLEQYVPTENLSTGFEGEMEAD IFSSHEWHRESNETMYQVVPLESSLRTSNEEVSVKHSTSAGGEAHAYGNNEGQPSNSIKSETLPTTPRPVPYELASQERD SALLRYKQKKKTRRYEKHIRYESRKARAESRIRIRGRFAKMEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 17 | 363 | 347 | 1.5E-151 | – | |
| PANTHER | 17 | 363 | 347 | 1.5E-151 | – | |
| ProSiteProfiles | 18 | 65 | 48 | 10.096 | ||
| SMART | 18 | 65 | 48 | 8.3E-14 | ||
| Pfam | 21 | 63 | 43 | 2.1E-5 | ||
| CDD | 21 | 65 | 45 | 3.4199E-8 | ||
| ProSiteProfiles | 61 | 107 | 47 | 10.296 | ||
| Pfam | 65 | 107 | 43 | 1.3E-6 | ||
| CDD | 65 | 107 | 43 | 2.11657E-5 | ||
| SMART | 66 | 107 | 42 | 0.037 | ||
| MobiDBLite | 275 | 307 | 33 | - | – | |
| MobiDBLite | 289 | 304 | 16 | - | – | |
| ProSiteProfiles | 319 | 361 | 43 | 14.594 | ||
| Pfam | 319 | 361 | 43 | 2.7E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0746000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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