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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0746100 |
Transcript ID | LotjaGi1g1v0746100.2 |
Related isoforms 5 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | FBD-associated F-box protein; TAIR: AT3G26920.2 FBD / Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9LJF9|FDL44_ARATH F-box/FBD/LRR-repeat protein At3g26920; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0746100 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131924556..131929973) extracted from Lotus japonicus Gifu genome v1.2.
AACACATCTTAGAGTTTATGCACGTCTAGACCCAACTCATACCTAACTAACACATCTTAGAATTTTGTTGATATAGAAAT TGTTGCATATTTCTACTCGTTTGTGCTATGTTTCTTTCTAGCATATATATTTGGGAAGAAGCTAATACGTGTGTTGACAA ATTTGCTCCAATAGATTTGCGCTTGGAGTTTGCTCACTGGTTTTGGTTTTTACTCATGTAGAGTCATCTTCTTACTTCTG ACATGTGTTGTTGTGTCGACTTAGTGTAGTTTGTTAAAAGACTAATACGTTTGGTGACAAACTTGCTTCATTGAGTTTGC GCTTGCAGTTTGCCCATCGATTTTAGTCCTTGCCCTTGTAGAGTCCTCTTCGTACTTTTAACATGCAATGTTGTGCCGGC TTAGTGTAGTTTGTTGAGAGGTTAATACATGTGGTGACAAACTTGCTTAGTTAAGATATTTTTTTCCAAAGATTCTCATT GCTCATAAATCAGAAAGGGCCAGGTGAGAAGGCCCAGCATACAAGGTATTAGGCCCAATTAAGCTAGGAATACACCGTAA ATGTGCAAGGGACAGATTGGGCCCAAACTGAAACAAGTAAGTGAGTAAGTGACGTTACTTTTAACACATCATAAAACTGC TATCTACACCACAATACTTTTGGTTTCCTGTATTACCCTTGCTATTAAAAAACATCTCGAAAAATAGAAAACAGCACTCA GAACTCAGAAGCATCCTCCGTCTCCGCCGCGCCTCGCGGCTGCCGGCGCTTTCTCCGACTTCGCTGCACTACCGATTTCT CTCGTTTCCGCCGTCTCCGTCGCACCTCTCTTCCCTCGCTCCAGTTCCTTTTCCGGCAACTCTCAAGTAGGTGAGTACAG TTACAGAGATCCAGTAAATCTAATAGAGAGGAGAGAATCAATTAGAGATCTAGGGTTAGAGCTACGTTTTTGCATCACAA TTACCATGGCCGCAATTTGAAAGCTTAATTTCTGTTATGTTAACTGAATTTGTATTATTCATTATGCTTGCTGAACAATT TAGCTGCTAGTTTTGTTCATGAATCCTCGATTAGGAATCTCCATTTTACAATGATAATATGCATACTAATCTGTTAACTG AATTTGGTTTATTAATTATGCTTAGTGAACAATTTAGCTTGTATGAGCATTTCAGCTTGAGGATCCATCCACTACGGTTC ATGAATCATCAATTAGGAAGCTCCATTTTCCATGATGATATGCATACTAATTAGGAGTATTAATTTAATTTAAAATTCAG ATTTAAAAGTTTGTGATATTTTCTTTTAACAAATATTTATTTTTATTTCAAAAATATCTACCTTTATAAGCATCAGATAG TGGGAAGACTTATTCCTTATTTCTTGGTAACTAACCTCTGCACTTTCTCCTTTCACGTTGAAAACAAACGTTTAGAAATA GAGTGTTCAACTTATTTCTGGGAGGAGACACTTAAAAAAAAACACTTCTCTTCTCTCTCTTACTGATTTTCCTTTCAATT TGATAAGGAGCACAAACTTGTTCATCAGTTCGGGGATCCCTGCACACGACTGATCCGACGGGTTGACGTATCTTGGGAGA GGAGCGCATTTAAGTTCTCATTTTACCCGGTGCAGTTTGGGCGTTTTCTCTGTAAGGACAGCGCCTAGCGCCCTTTCTCT TATTATTTTATTGTTGTTCGTTAATGTATTGAATCATATTGTGTCTAATCAATATCAATTTTTAATTCCTCTTTGTTGCT GTTTGTAATCTAGAAATTGAGCAACAATCAATTGATATTGATTAAACACAATATGAAGAGGAACAAGATAACATAAAGTG CACCACTTAAATAAGTTGTAATCAATCCCAATATGATTCAATACATTAACGAACAACAATAAAATAATAAGAGAAAGGGT TTGGAGAAGTCTGGGTTGAAGCGCGCTAGGCGTTGTCCCCAACTGCACTTGGTAAAATGAGAACTTAAATGCGCTCATCT CCCAAGATACGTCAACCCGTCGGATTAGTCGTGTGCAGCGAAGGATCCCCGAACTGATGAACAAGTTTGTGCTCTTTATC AAATTGAGGAAAATCAGTCAAATAGAGAAGAGAAGAGAAGTGTTTGTAAACGTTTGTTTTCAACGTGTGTTGAATGTGCA ACAAAAGAATAGGAAACGTGAAACCAGAAGAAAGGAGAAAGTGCAGGAGGTTAGTTACCAAGAAATAGGGAATTAAGTCT TCCCACTATCTGATGCTTCTAAAGGGTAGATATTTTTGAAATAAAAATAAATATTTGTTAAAAGAAAATATCACAAACTT TTAAATCTGAATTTTAAATTAAATAAATATAATTTTTCCAACAGAAATTAGAACCAGTAGTACTGTAGTAGTAAGATTCA CTTCAGTTATTGGCAGGTAATTTACATTATCTAGGATGGTAGATTGGATTAGCGCCTTACCAGACACGATCCTCAATTTC ATACTCTCTTTTCTCCCAACCAAGCAAGTCGTTGCCACAAGCGGTGGAAGCCGCTGTGGCGCTCAGTCCCCACTAGGGAC TTAGATGATGGTCGCTTTTGGAGAGACAGAGAGGCTTATGCTCGTCTTGTTCAGGGAGTGAATGCACTCTTCCGAGATCT GCATCATCCCATCCCAAAACTCCGCCTTAGGTGTGTCTCTCATTTTACTGATCTTGCCGATGTCATCATATGGGTTAATG CTGCTGTGCAACGCAGAGTTCAGCACCTCAACATTAACTTAGCTGGAGACCAATCAACTTGTCTTCCATGCTCAGTTGCA AAACTCTGGTGGTTCTCAAGTTGGATAAAATTAAATTGGAACCTATTTCCTCTGTTGATCTAACTTCCCTGAAAGTGCTG CAGCTACGACGTTTATCTTTCTCACAACGTGGATGTCTCGTCGAGCTTCTTTTTGGATGTCCAGTTCTTGAGGATTTTAC AGAATATGATCTAACTTTTGGAAGTGATTTATGTTATGACGAAGATGTCACTGGAGAGTTTAAAACCTTAGGCAAGTTGC TCAGAGCAAACATATCCAATACAAATACAAAGATTATGCTGGAACTGGTTAACAATGTCAAGTTTTTGCACATGGATTCG GTAATGTGATTTATAAATCATTATTTTTCTTTCCTAAGTGAAATGAGATATTTGATTTCTTGTTATTGTAACTCATGCAG ATTGATTGTAGTCTTCTTGACCCATATCGTATTGAAGTCCTGGGCCCCTACGTTTTCCCCATGTTCCAGAATTTGACCCA TATTAAACTTCAATATGTAAATTATAATGATGACTGGTCTGAGGTAGTGGAATTGCTCAAGTATTGCCCCAATCTTCAAG TTATTGTCATTGATCAGGTTCGATTAGAGGCTTAGAATGATTACTATTTTTTGTCATTTTTTCATTTCATTTCTTTATTC TGTGTTTATTTTTAGCAGCCAAATTTTTATGCCTATGTGTCTGAACTATCTGAAGAAGAACCAGAAAATTGGCCGTACAC ACCATCTTTTCCTGAGTGCATTCTATTACACCTTGAAGAATGCTATCTAAATGATTATAGAGGCACCAAAGGTGAGTTTC AATTTGCAAGGCATGTAATGCAGAATGGAAGATCTTTAAAGAAGATGACAACATGCAGTGGTGATTTCATAAATCAACAG GGAAGGCTTGAGCTGATAGAAAAATTATCTTCATGCACAAGGCACTCAGCAACGTGTGAACTTTACTTTGAATTACAAAA TAGATTTGGTAGCTGCGAGTAGTTTCTTCATTTCTTCCTTTTAACTAGTAGCTAGCTACAAATATCTACAAGGATATTAT GATACATGTTTGAATTTAGGGATTGCATGTTTTTAACAGTGCAGATCAGTTCTAGAATTCTACAGCAACCACCACAAGTA TTTCCCCACCATGTGGAGTTGGCTATATAAATGAGTTGATTGATGCCATAAATTGATGTCATGGATCAAGTTTAAAGATA GATCATATCTGTAAATCTCTTTTAATGTTTTGCCCTATAGTTTTCCTTGGTCTTACTGGAGTATCTTCCATGCCGTCCAC CTTTTTTTTCAGTGCTTCGATAAGTCTTCTCCAACCAAACCACTTAAGATGAGATTGTATTATCTTTTTTATCTGTAAAT CCTGTGTTGTTTTATACAATCATTCATCTGTTTCACAACGTTCTCATCTCACAAAATTCTAGAAATCTACACTGCACTAA TCGTGCTATAACACAATCTGAGCAAGCTTAATGCCTGTTGTGATATACCAGAGTGCTGGTATTCCTGGGTGGTTTATTCA CGTTTATTTACTTAATTTTGGTAATATTTGGTTCAGTCTACAATGCTGTAGAGGTTTTTTTAATGGTGAAAATTAGTTAT TTCATTCTCATTGGATTTTTTAACTTATTTTCATGCTGCTGCTGTTATATACATTTCATTATAGCTCGGCTATCATACAG GTTTCAAAAAATTCAGGGGAAAGAAGGCATTTTTTTTTTGGTCAAAGGAATAGTTTCATTAGATGGAAAGGGCCATGCCC AGTACAAGGCTACAAGAGCCAAACATTCAGCCTTTCTACAGAGCCCATACAAATTCTCAAGCAATACAATCAGGCCTGCT AGCTGAAGTACACAGTAAACTTACAAGAAAGTTCTATTACACTTAAGCACATGACTCCTTTATACATCTAAACACAGTTA GCTAAGGGAGATTTAAAAAAGAGACAACTTGCAAGCCCAAAGCCACCAAGCCCATCACCAATAAGCCCAAAAACTCAGCC CAATAAAGAAATCCAAACAAACCCTAGCAATTTGGGATCTGAGGCGTTGGAAGTGATGGCGACGGCGGCGGGACGACGTT GGCTTCACCGCTCAACCTAGAACCTGATCTCCTGCAAACAAAGCGAAAATTTGATATGAAAGCTTAAATGTCGCTTCTTC AAGACCTTGCCGGCTCTGCCGTCAGCTCTCTGCTACAAGGTCATCAACCACAGCGGTGCACAGCACCTCAGAACAAGCAA CAGACCAGATCTGAAAGGAAGGAGCGATGAGACCATGGAAGTACCACTGAAGATGATGGTGGCCACGGCTGGTGGTTAGT GGTTGGAGGTGGAGGCCGTGGGTACTGTGGGAGAAAGCTACCTACCTAGTGTAGGAAAGGCCTCCATGGCGGAGGAGAAG AACCCCCAAAGGGGGAGGAGCCCCCAGTGGGGTAGCGGCTGGATGTTGTGGGTTGCCTTCAAACCCTAGCAGAGCTGCAA TTTACCGTCTTTTTGGATGGGGTTGGCTCAACCATAAAGTGGGCTGAGTCTTTATCTTAGCTCCTGAAAAAAAATAGTTG TTTGTCCAAAAAAAAAAGTTGTTAACCAATATTATGAATGAATCACTAAATATTGTTC
CDS sequence (LotjaGi1g1v0746100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAGTTGCAAAACTCTGGTGGTTCTCAAGTTGGATAAAATTAAATTGGAACCTATTTCCTCTGTTGATCTAACTTC CCTGAAAGTGCTGCAGCTACGACGTTTATCTTTCTCACAACGTGGATGTCTCGTCGAGCTTCTTTTTGGATGTCCAGTTC TTGAGGATTTTACAGAATATGATCTAACTTTTGGAAGTGATTTATGTTATGACGAAGATGTCACTGGAGAGTTTAAAACC TTAGGCAAGTTGCTCAGAGCAAACATATCCAATACAAATACAAAGATTATGCTGGAACTGGTTAACAATGTCAAGTTTTT GCACATGGATTCGATTGATTGTAGTCTTCTTGACCCATATCGTATTGAAGTCCTGGGCCCCTACGTTTTCCCCATGTTCC AGAATTTGACCCATATTAAACTTCAATATGTAAATTATAATGATGACTGGTCTGAGGTAGTGGAATTGCTCAAGTATTGC CCCAATCTTCAAGTTATTGTCATTGATCAGCCAAATTTTTATGCCTATGTGTCTGAACTATCTGAAGAAGAACCAGAAAA TTGGCCGTACACACCATCTTTTCCTGAGTGCATTCTATTACACCTTGAAGAATGCTATCTAAATGATTATAGAGGCACCA AAGGTGAGTTTCAATTTGCAAGGCATGTAATGCAGAATGGAAGATCTTTAAAGAAGATGACAACATGCAGTGGTGATTTC ATAAATCAACAGGGAAGGCTTGAGCTGATAGAAAAATTATCTTCATGCACAAGGCACTCAGCAACGTGTGAACTTTACTT TGAATTACAAAATAGATTTGGTAGCTGCGAGTAG
Protein sequence (LotjaGi1g1v0746100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSCKTLVVLKLDKIKLEPISSVDLTSLKVLQLRRLSFSQRGCLVELLFGCPVLEDFTEYDLTFGSDLCYDEDVTGEFKT LGKLLRANISNTNTKIMLELVNNVKFLHMDSIDCSLLDPYRIEVLGPYVFPMFQNLTHIKLQYVNYNDDWSEVVELLKYC PNLQVIVIDQPNFYAYVSELSEEEPENWPYTPSFPECILLHLEECYLNDYRGTKGEFQFARHVMQNGRSLKKMTTCSGDF INQQGRLELIEKLSSCTRHSATCELYFELQNRFGSCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 265 | 265 | 1.7E-36 | – | |
PANTHER | 1 | 265 | 265 | 1.7E-36 | – | |
Gene3D | 1 | 268 | 268 | 8.8E-10 | ||
SUPERFAMILY | 3 | 172 | 170 | 4.71E-9 | – | |
Pfam | 193 | 234 | 42 | 9.2E-11 | ||
SMART | 196 | 268 | 73 | 1.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0746100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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