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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0746100 |
| Transcript ID | LotjaGi1g1v0746100.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G26920.1 FBD / Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9LJF9|FDL44_ARATH F-box/FBD/LRR-repeat protein At3g26920; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0746100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131925712..131929912) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGTTGATATAGAAATTGTTGCATATTTCTACTCGTTTGTGCTATGTTTCTTTCTAGCATATATATTTGGGAAGAAG CTAATACGTGTGTTGACAAATTTGCTCCAATAGATTTGCGCTTGGAGTTTGCTCACTGGTTTTGGTTTTTACTCATGTAG AGTCATCTTCTTACTTCTGACATGTGTTGTTGTGTCGACTTAGTGTAGTTTGTTAAAAGACTAATACGTTTGGTGACAAA CTTGCTTCATTGAGTTTGCGCTTGCAGTTTGCCCATCGATTTTAGTCCTTGCCCTTGTAGAGTCCTCTTCGTACTTTTAA CATGCAATGTTGTGCCGGCTTAGTGTAGTTTGTTGAGAGGTTAATACATGTGGTGACAAACTTGCTTAGTTAAGATATTT TTTTCCAAAGATTCTCATTGCTCATAAATCAGAAAGGGCCAGGTGAGAAGGCCCAGCATACAAGGTATTAGGCCCAATTA AGCTAGGAATACACCGTAAATGTGCAAGGGACAGATTGGGCCCAAACTGAAACAAGTAAGTGAGTAAGTGACGTTACTTT TAACACATCATAAAACTGCTATCTACACCACAATACTTTTGGTTTCCTGTATTACCCTTGCTATTAAAAAACATCTCGAA AAATAGAAAACAGCACTCAGAACTCAGAAGCATCCTCCGTCTCCGCCGCGCCTCGCGGCTGCCGGCGCTTTCTCCGACTT CGCTGCACTACCGATTTCTCTCGTTTCCGCCGTCTCCGTCGCACCTCTCTTCCCTCGCTCCAGTTCCTTTTCCGGCAACT CTCAAGTAGGTGAGTACAGTTACAGAGATCCAGTAAATCTAATAGAGAGGAGAGAATCAATTAGAGATCTAGGGTTAGAG CTACGTTTTTGCATCACAATTACCATGGCCGCAATTTGAAAGCTTAATTTCTGTTATGTTAACTGAATTTGTATTATTCA TTATGCTTGCTGAACAATTTAGCTGCTAGTTTTGTTCATGAATCCTCGATTAGGAATCTCCATTTTACAATGATAATATG CATACTAATCTGTTAACTGAATTTGGTTTATTAATTATGCTTAGTGAACAATTTAGCTTGTATGAGCATTTCAGCTTGAG GATCCATCCACTACGGTTCATGAATCATCAATTAGGAAGCTCCATTTTCCATGATGATATGCATACTAATTAGGAGTATT AATTTAATTTAAAATTCAGATTTAAAAGTTTGTGATATTTTCTTTTAACAAATATTTATTTTTATTTCAAAAATATCTAC CTTTATAAGCATCAGATAGTGGGAAGACTTATTCCTTATTTCTTGGTAACTAACCTCTGCACTTTCTCCTTTCACGTTGA AAACAAACGTTTAGAAATAGAGTGTTCAACTTATTTCTGGGAGGAGACACTTAAAAAAAAACACTTCTCTTCTCTCTCTT ACTGATTTTCCTTTCAATTTGATAAGGAGCACAAACTTGTTCATCAGTTCGGGGATCCCTGCACACGACTGATCCGACGG GTTGACGTATCTTGGGAGAGGAGCGCATTTAAGTTCTCATTTTACCCGGTGCAGTTTGGGCGTTTTCTCTGTAAGGACAG CGCCTAGCGCCCTTTCTCTTATTATTTTATTGTTGTTCGTTAATGTATTGAATCATATTGTGTCTAATCAATATCAATTT TTAATTCCTCTTTGTTGCTGTTTGTAATCTAGAAATTGAGCAACAATCAATTGATATTGATTAAACACAATATGAAGAGG AACAAGATAACATAAAGTGCACCACTTAAATAAGTTGTAATCAATCCCAATATGATTCAATACATTAACGAACAACAATA AAATAATAAGAGAAAGGGTTTGGAGAAGTCTGGGTTGAAGCGCGCTAGGCGTTGTCCCCAACTGCACTTGGTAAAATGAG AACTTAAATGCGCTCATCTCCCAAGATACGTCAACCCGTCGGATTAGTCGTGTGCAGCGAAGGATCCCCGAACTGATGAA CAAGTTTGTGCTCTTTATCAAATTGAGGAAAATCAGTCAAATAGAGAAGAGAAGAGAAGTGTTTGTAAACGTTTGTTTTC AACGTGTGTTGAATGTGCAACAAAAGAATAGGAAACGTGAAACCAGAAGAAAGGAGAAAGTGCAGGAGGTTAGTTACCAA GAAATAGGGAATTAAGTCTTCCCACTATCTGATGCTTCTAAAGGGTAGATATTTTTGAAATAAAAATAAATATTTGTTAA AAGAAAATATCACAAACTTTTAAATCTGAATTTTAAATTAAATAAATATAATTTTTCCAACAGAAATTAGAACCAGTAGT ACTGTAGTAGTAAGATTCACTTCAGTTATTGGCAGGTAATTTACATTATCTAGGATGGTAGATTGGATTAGCGCCTTACC AGACACGATCCTCAATTTCATACTCTCTTTTCTCCCAACCAAGCAAGTCGTTGCCACAAGCGGTGGAAGCCGCTGTGGCG CTCAGTCCCCACTAGGGACTTAGATGATGGTCGCTTTTGGAGAGACAGAGAGGCTTATGCTCGTCTTGTTCAGGGAGTGA ATGCACTCTTCCGAGATCTGCATCATCCCATCCCAAAACTCCGCCTTAGGTGTGTCTCTCATTTTACTGATCTTGCCGAT GTCATCATATGGGTTAATGCTGCTGTGCAACGCAGAGTTCAGCACCTCAACATTAACTTAGCTGGAGACCAATCAACTTG TCTTCCATGCTCAGTTGCAAAACTCTGGTGGTTCTCAAGTTGGATAAAATTAAATTGGAACCTATTTCCTCTGTTGATCT AACTTCCCTGAAAGTGCTGCAGCTACGACGTTTATCTTTCTCACAACGTGGATGTCTCGTCGAGCTTCTTTTTGGATGTC CAGTTCTTGAGGATTTTACAGAATATGATCTAACTTTTGGAAGTGATTTATGTTATGACGAAGATGTCACTGGAGAGTTT AAAACCTTAGGCAAGTTGCTCAGAGCAAACATATCCAATACAAATACAAAGATTATGCTGGAACTGGTTAACAATGTCAA GTTTTTGCACATGGATTCGGTAATGTGATTTATAAATCATTATTTTTCTTTCCTAAGTGAAATGAGATATTTGATTTCTT GTTATTGTAACTCATGCAGATTGATTGTAGTCTTCTTGACCCATATCGTATTGAAGTCCTGGGCCCCTACGTTTTCCCCA TGTTCCAGAATTTGACCCATATTAAACTTCAATATGTAAATTATAATGATGACTGGTCTGAGGTAGTGGAATTGCTCAAG TATTGCCCCAATCTTCAAGTTATTGTCATTGATCAGGTTCGATTAGAGGCTTAGAATGATTACTATTTTTTGTCATTTTT TCATTTCATTTCTTTATTCTGTGTTTATTTTTAGCAGCCAAATTTTTATGCCTATGTGTCTGAACTATCTGAAGAAGAAC CAGAAAATTGGCCGTACACACCATCTTTTCCTGAGTGCATTCTATTACACCTTGAAGAATGCTATCTAAATGATTATAGA GGCACCAAAGGTGAGTTTCAATTTGCAAGGCATGTAATGCAGAATGGAAGATCTTTAAAGAAGATGACAACATGCAGTGG TGATTTCATAAATCAACAGGGAAGGCTTGAGCTGATAGAAAAATTATCTTCATGCACAAGGCACTCAGCAACGTGTGAAC TTTACTTTGAATTACAAAATAGATTTGGTAGCTGCGAGTAGTTTCTTCATTTCTTCCTTTTAACTAGTAGCTAGCTACAA ATATCTACAAGGATATTATGATACATGTTTGAATTTAGGGATTGCATGTTTTTAACAGTGCAGATCAGTTCTAGAATTCT ACAGCAACCACCACAAGTATTTCCCCACCATGTGGAGTTGGCTATATAAATGAGTTGATTGATGCCATAAATTGATGTCA TGGATCAAGTTTAAAGATAGATCATATCTGTAAATCTCTTTTAATGTTTTGCCCTATAGTTTTCCTTGGTCTTACTGGAG TATCTTCCATGCCGTCCACCTTTTTTTTCAGTGCTTCGATAAGTCTTCTCCAACCAAACCACTTAAGATGAGATTGTATT ATCTTTTTTATCTGTAAATCCTGTGTTGTTTTATACAATCATTCATCTGTTTCACAACGTTCTCATCTCACAAAATTCTA GAAATCTACACTGCACTAATCGTGCTATAACACAATCTGAG
CDS sequence (LotjaGi1g1v0746100.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGATTGATTGTAGTCTTCTTGACCCATATCGTATTGAAGTCCTGGGCCCCTACGTTTTCCCCATGTTCCAGAATTT GACCCATATTAAACTTCAATATGTAAATTATAATGATGACTGGTCTGAGGTAGTGGAATTGCTCAAGTATTGCCCCAATC TTCAAGTTATTGTCATTGATCAGCAGCCAAATTTTTATGCCTATGTGTCTGAACTATCTGAAGAAGAACCAGAAAATTGG CCGTACACACCATCTTTTCCTGAGTGCATTCTATTACACCTTGAAGAATGCTATCTAAATGATTATAGAGGCACCAAAGG TGAGTTTCAATTTGCAAGGCATGTAATGCAGAATGGAAGATCTTTAAAGAAGATGACAACATGCAGTGGTGATTTCATAA ATCAACAGGGAAGGCTTGAGCTGATAGAAAAATTATCTTCATGCACAAGGCACTCAGCAACGTGTGAACTTTACTTTGAA TTACAAAATAGATTTGGTAGCTGCGAGTAG
Protein sequence (LotjaGi1g1v0746100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQIDCSLLDPYRIEVLGPYVFPMFQNLTHIKLQYVNYNDDWSEVVELLKYCPNLQVIVIDQQPNFYAYVSELSEEEPENW PYTPSFPECILLHLEECYLNDYRGTKGEFQFARHVMQNGRSLKKMTTCSGDFINQQGRLELIEKLSSCTRHSATCELYFE LQNRFGSCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 15 | 125 | 111 | 7.65E-5 | – | |
| PANTHER | 21 | 157 | 137 | 4.8E-20 | – | |
| PANTHER | 21 | 157 | 137 | 4.8E-20 | – | |
| Pfam | 85 | 126 | 42 | 4.1E-11 | ||
| SMART | 88 | 160 | 73 | 1.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0746100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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