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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0746100 |
| Transcript ID | LotjaGi1g1v0746100.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT3G26920.2 FBD / Leucine Rich Repeat domains containing protein; Swiss-Prot: sp|Q9LJF9|FDL44_ARATH F-box/FBD/LRR-repeat protein At3g26920; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0746100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:131925810..131929337) extracted from Lotus japonicus Gifu genome v1.2.
CTGCTATCTACACCACAATACTTTTGGTTTCCTGTATTACCCTTGCTATTAAAAAACATCTCGAAAAATAGAAAACAGCA CTCAGAACTCAGAAGCATCCTCCGTCTCCGCCGCGCCTCGCGGCTGCCGGCGCTTTCTCCGACTTCGCTGCACTACCGAT TTCTCTCGTTTCCGCCGTCTCCGTCGCACCTCTCTTCCCTCGCTCCAGTTCCTTTTCCGGCAACTCTCAAGTAGGTGAGT ACAGTTACAGAGATCCAGTAAATCTAATAGAGAGGAGAGAATCAATTAGAGATCTAGGGTTAGAGCTACGTTTTTGCATC ACAATTACCATGGCCGCAATTTGAAAGCTTAATTTCTGTTATGTTAACTGAATTTGTATTATTCATTATGCTTGCTGAAC AATTTAGCTGCTAGTTTTGTTCATGAATCCTCGATTAGGAATCTCCATTTTACAATGATAATATGCATACTAATCTGTTA ACTGAATTTGGTTTATTAATTATGCTTAGTGAACAATTTAGCTTGTATGAGCATTTCAGCTTGAGGATCCATCCACTACG GTTCATGAATCATCAATTAGGAAGCTCCATTTTCCATGATGATATGCATACTAATTAGGAGTATTAATTTAATTTAAAAT TCAGATTTAAAAGTTTGTGATATTTTCTTTTAACAAATATTTATTTTTATTTCAAAAATATCTACCTTTATAAGCATCAG ATAGTGGGAAGACTTATTCCTTATTTCTTGGTAACTAACCTCTGCACTTTCTCCTTTCACGTTGAAAACAAACGTTTAGA AATAGAGTGTTCAACTTATTTCTGGGAGGAGACACTTAAAAAAAAACACTTCTCTTCTCTCTCTTACTGATTTTCCTTTC AATTTGATAAGGAGCACAAACTTGTTCATCAGTTCGGGGATCCCTGCACACGACTGATCCGACGGGTTGACGTATCTTGG GAGAGGAGCGCATTTAAGTTCTCATTTTACCCGGTGCAGTTTGGGCGTTTTCTCTGTAAGGACAGCGCCTAGCGCCCTTT CTCTTATTATTTTATTGTTGTTCGTTAATGTATTGAATCATATTGTGTCTAATCAATATCAATTTTTAATTCCTCTTTGT TGCTGTTTGTAATCTAGAAATTGAGCAACAATCAATTGATATTGATTAAACACAATATGAAGAGGAACAAGATAACATAA AGTGCACCACTTAAATAAGTTGTAATCAATCCCAATATGATTCAATACATTAACGAACAACAATAAAATAATAAGAGAAA GGGTTTGGAGAAGTCTGGGTTGAAGCGCGCTAGGCGTTGTCCCCAACTGCACTTGGTAAAATGAGAACTTAAATGCGCTC ATCTCCCAAGATACGTCAACCCGTCGGATTAGTCGTGTGCAGCGAAGGATCCCCGAACTGATGAACAAGTTTGTGCTCTT TATCAAATTGAGGAAAATCAGTCAAATAGAGAAGAGAAGAGAAGTGTTTGTAAACGTTTGTTTTCAACGTGTGTTGAATG TGCAACAAAAGAATAGGAAACGTGAAACCAGAAGAAAGGAGAAAGTGCAGGAGGTTAGTTACCAAGAAATAGGGAATTAA GTCTTCCCACTATCTGATGCTTCTAAAGGGTAGATATTTTTGAAATAAAAATAAATATTTGTTAAAAGAAAATATCACAA ACTTTTAAATCTGAATTTTAAATTAAATAAATATAATTTTTCCAACAGAAATTAGAACCAGTAGTACTGTAGTAGTAAGA TTCACTTCAGTTATTGGCAGGTAATTTACATTATCTAGGATGGTAGATTGGATTAGCGCCTTACCAGACACGATCCTCAA TTTCATACTCTCTTTTCTCCCAACCAAGCAAGTCGTTGCCACAAGCGGTGGAAGCCGCTGTGGCGCTCAGTCCCCACTAG GGACTTAGATGATGGTCGCTTTTGGAGAGACAGAGAGGCTTATGCTCGTCTTGTTCAGGGAGTGAATGCACTCTTCCGAG ATCTGCATCATCCCATCCCAAAACTCCGCCTTAGGTGTGTCTCTCATTTTACTGATCTTGCCGATGTCATCATATGGGTT AATGCTGCTGTGCAACGCAGAGTTCAGCACCTCAACATTAACTTAGCTGGAGACCAATCAACTTGTCTTCCATGCTCAGT TGCAAAACTCTGGTGGTTCTCAAGTTGGATAAAATTAAATTGGAACCTATTTCCTCTGTTGATCTAACTTCCCTGAAAGT GCTGCAGCTACGACGTTTATCTTTCTCACAACGTGGATGTCTCGTCGAGCTTCTTTTTGGATGTCCAGTTCTTGAGGATT TTACAGAATATGATCTAACTTTTGGAAGTGATTTATGTTATGACGAAGATGTCACTGGAGAGTTTAAAACCTTAGGCAAG TTGCTCAGAGCAAACATATCCAATACAAATACAAAGATTATGCTGGAACTGGTTAACAATGTCAAGTTTTTGCACATGGA TTCGGTAATGTGATTTATAAATCATTATTTTTCTTTCCTAAGTGAAATGAGATATTTGATTTCTTGTTATTGTAACTCAT GCAGATTGATTGTAGTCTTCTTGACCCATATCGTATTGAAGTCCTGGGCCCCTACGTTTTCCCCATGTTCCAGAATTTGA CCCATATTAAACTTCAATATGTAAATTATAATGATGACTGGTCTGAGGTAGTGGAATTGCTCAAGTATTGCCCCAATCTT CAAGTTATTGTCATTGATCAGGTTCGATTAGAGGCTTAGAATGATTACTATTTTTTGTCATTTTTTCATTTCATTTCTTT ATTCTGTGTTTATTTTTAGCAGCCAAATTTTTATGCCTATGTGTCTGAACTATCTGAAGAAGAACCAGAAAATTGGCCGT ACACACCATCTTTTCCTGAGTGCATTCTATTACACCTTGAAGAATGCTATCTAAATGATTATAGAGGCACCAAAGGTGAG TTTCAATTTGCAAGGCATGTAATGCAGAATGGAAGATCTTTAAAGAAGATGACAACATGCAGTGGTGATTTCATAAATCA ACAGGGAAGGCTTGAGCTGATAGAAAAATTATCTTCATGCACAAGGCACTCAGCAACGTGTGAACTTTACTTTGAATTAC AAAATAGATTTGGTAGCTGCGAGTAGTTTCTTCATTTCTTCCTTTTAACTAGTAGCTAGCTACAAATATCTACAAGGATA TTATGATACATGTTTGAATTTAGGGATTGCATGTTTTTAACAGTGCAGATCAGTTCTAGAATTCTACAGCAACCACCACA AGTATTTCCCCACCATGTGGAGTTGGCTATATAAATGAGTTGATTGATGCCATAAATTGATGTCATGGATCAAGTTTAAA GATAGATCATATCTGTAAATCTCTTTTAATGTTTTGCCCTATAGTTTTCCTTGGTCTTACTGGAGTATCTTCCATGCCGT CCACCTTTTTTTTCAGTGCTTCGATAAGTCTTCTCCAACCAAACCACTTAAGATGAGATTGTATTATCTTTTTTATCTGT AAATCCTG
CDS sequence (LotjaGi1g1v0746100.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAGTTGCAAAACTCTGGTGGTTCTCAAGTTGGATAAAATTAAATTGGAACCTATTTCCTCTGTTGATCTAACTTC CCTGAAAGTGCTGCAGCTACGACGTTTATCTTTCTCACAACGTGGATGTCTCGTCGAGCTTCTTTTTGGATGTCCAGTTC TTGAGGATTTTACAGAATATGATCTAACTTTTGGAAGTGATTTATGTTATGACGAAGATGTCACTGGAGAGTTTAAAACC TTAGGCAAGTTGCTCAGAGCAAACATATCCAATACAAATACAAAGATTATGCTGGAACTGGTTAACAATGTCAAGTTTTT GCACATGGATTCGATTGATTGTAGTCTTCTTGACCCATATCGTATTGAAGTCCTGGGCCCCTACGTTTTCCCCATGTTCC AGAATTTGACCCATATTAAACTTCAATATGTAAATTATAATGATGACTGGTCTGAGGTAGTGGAATTGCTCAAGTATTGC CCCAATCTTCAAGTTATTGTCATTGATCAGCCAAATTTTTATGCCTATGTGTCTGAACTATCTGAAGAAGAACCAGAAAA TTGGCCGTACACACCATCTTTTCCTGAGTGCATTCTATTACACCTTGAAGAATGCTATCTAAATGATTATAGAGGCACCA AAGGTGAGTTTCAATTTGCAAGGCATGTAATGCAGAATGGAAGATCTTTAAAGAAGATGACAACATGCAGTGGTGATTTC ATAAATCAACAGGGAAGGCTTGAGCTGATAGAAAAATTATCTTCATGCACAAGGCACTCAGCAACGTGTGAACTTTACTT TGAATTACAAAATAGATTTGGTAGCTGCGAGTAG
Protein sequence (LotjaGi1g1v0746100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSCKTLVVLKLDKIKLEPISSVDLTSLKVLQLRRLSFSQRGCLVELLFGCPVLEDFTEYDLTFGSDLCYDEDVTGEFKT LGKLLRANISNTNTKIMLELVNNVKFLHMDSIDCSLLDPYRIEVLGPYVFPMFQNLTHIKLQYVNYNDDWSEVVELLKYC PNLQVIVIDQPNFYAYVSELSEEEPENWPYTPSFPECILLHLEECYLNDYRGTKGEFQFARHVMQNGRSLKKMTTCSGDF INQQGRLELIEKLSSCTRHSATCELYFELQNRFGSCE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 265 | 265 | 1.7E-36 | – | |
| PANTHER | 1 | 265 | 265 | 1.7E-36 | – | |
| Gene3D | 1 | 268 | 268 | 8.8E-10 | ||
| SUPERFAMILY | 3 | 172 | 170 | 4.71E-9 | – | |
| Pfam | 193 | 234 | 42 | 9.2E-11 | ||
| SMART | 196 | 268 | 73 | 1.1E-4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0746100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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