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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0747500 |
| Transcript ID | LotjaGi1g1v0747500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF3511 domain protein; TAIR: AT3G05725.1 hypothetical protein (DUF3511); Swiss-Prot: sp|Q2H2I4|MED4_CHAGB Mediator of RNA polymerase II transcription subunit 4; TrEMBL-Plants: tr|I3SNG1|I3SNG1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0747500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:132025548..132026660) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCGGTTAAACAAACCTGAAATCCATAACATAGCATGTTGATTTTCATGAGTTGTCTGTCCCCTTTCTCACTCTCATT CCCTTGAACCTCTATTTCATACTTCTCCCTCAAACACCTATATATATAAAATGTTCCTAGCGTTTAGGGGCCCCTGATTT TCAATTCCATTGCTTCCCCTCTCTCTCTTCCACTGCTCAAGGCAGATAAGAGGGGAGGGGAGGTAATTGAACACCAAAAA TAAAGGGAAGAAACAGAGAAATTGAAAAACAGGGTTGAGGAGGAGGAGGTGGTAGATGGAGGAGCTCCAAAACCAGCGCA GTAGATCCTCCTATGCAGCTGCTGGTACCGACCTACATGATGTGAATGTGAGAACCATAAACAACAACTTGTGGGTAGGG AGGAGCAAGAACTACAACAACCCTCCTCCATCTAATTATTACGACCCATCCCGATACCGTTGCGTAAAGACGGTTAGAAG ATCCTCAGACACATGGTGGTGGAATGATCCTGATAGGAAGAGGAAGCGCAGAGTCGCCAAATACAAGCTCTATGCGGCAG AAGGTAAATGCAAGCATTCCGTAAAGAAAGGATGGCGCTGGTTCAAAATTAAATGCATTAAGATCATCACTCGTTTCTAG CACGTGTATGTTTGAATTTTCATTGAATTCAACGCCGATCCACTTGAGAAAATCATTATTCTCGATTAATGCATTGAGAC GTGTGTTTTCACACATTGAAGAGAATGGAGCACAATTATTGCATGGATCATATTTATCTTGTATATCTATATATGATTAC ATGTTCTTCCTTGTATCTCTCCTTTTGTAGCATTTCCTCCTTGGTAGTTCTTCCATTTTGTAGAATCTTATCACTTTTTT TTCTTCCTTTTATGATGATCCCTCAAATTTGAGATACAGATATATAATTTGGGATCGATGATTGTGTTTTTTTTTTAACG TGATGTTTGTGTTTACGTAGCGAAATCCCACATGCATTATCAATGTATCAATAAAAGTAATTGGGACATTGAGATTGAAG GCATAGTATATTATTAGTATGTGTTTGGGTGAGCACTGTCAAATGTGATTTCGAATAAACTTGATTTTTTTTC
CDS sequence (LotjaGi1g1v0747500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGAGCTCCAAAACCAGCGCAGTAGATCCTCCTATGCAGCTGCTGGTACCGACCTACATGATGTGAATGTGAGAAC CATAAACAACAACTTGTGGGTAGGGAGGAGCAAGAACTACAACAACCCTCCTCCATCTAATTATTACGACCCATCCCGAT ACCGTTGCGTAAAGACGGTTAGAAGATCCTCAGACACATGGTGGTGGAATGATCCTGATAGGAAGAGGAAGCGCAGAGTC GCCAAATACAAGCTCTATGCGGCAGAAGGTAAATGCAAGCATTCCGTAAAGAAAGGATGGCGCTGGTTCAAAATTAAATG CATTAAGATCATCACTCGTTTCTAG
Protein sequence (LotjaGi1g1v0747500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEELQNQRSRSSYAAAGTDLHDVNVRTINNNLWVGRSKNYNNPPPSNYYDPSRYRCVKTVRRSSDTWWWNDPDRKRKRRV AKYKLYAAEGKCKHSVKKGWRWFKIKCIKIITRF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 30 | 111 | 82 | 1.2E-22 | – | |
| PANTHER | 30 | 111 | 82 | 1.2E-22 | – | |
| Pfam | 69 | 112 | 44 | 1.0E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0747500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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