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LotjaGi1g1v0757300.2

Overview

Field Value
Gene ID LotjaGi1g1v0757300
Transcript ID LotjaGi1g1v0757300.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Fe/S biogenesis protein nfuA; TAIR: AT4G01940.1 NFU domain protein 1; Swiss-Prot: sp|Q93W77|NIFU1_ARATH NifU-like protein 1, chloroplastic; TrEMBL-Plants: tr|I3S2H9|I3S2H9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0757300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:133049970..133051732) extracted from Lotus japonicus Gifu genome v1.2.

GACCAATAGCCCAACCCATCTTCGAAAAATTCTTTAACCAACAAAAAAACGAGAAAATCGTGGTCACTGTGCATTCGATT CTGTGATTCAGTTGAGTTACCATGGCGTCTCTAACCTCCATTTCTTCGATGATGAAATTCACAGTTCATCAAAACCTTCA TCACCCTCACCGTCTTCATCATCTGAATTTGGCAGTCACCAATTTCACAAAGAGAACCTCAAGCACCATCAGATTCGCTT CTTCAACCAATCAGAACCAGTCTTCTTCTTCTTCTCCTTCTCCGGGATTGTACTCCGCCGCGAAATTCGACCTCACCGCT CCCAACGTCGACCTCGTCCTCGAAGATGTCCGGCCATATCTCATCTCCGACGGCGGCAACGTCGAAGTCGTTTCCGTCGA GAACGGCGTCATTTCTCTCAAGCTCCAAGGAGCATGCGAAAGCTGCCCTAGCTCAACCACAACCATGAAATTGGGGATCG AGCGCGTTCTCAAGGAGAAATTCGGAGATGCGGTTAAAGATATAGTGCAAGTCTATGATGAAGAACCAAAAGAAACCACT GTTGAGGTCAGAATTTTTTTCTTCTTCTTCTTTGGAATGATATGAAAATATGAAATGATGAATGTTGAGAATTGTGGTTT GTGATTTCAGGCTGTGAATAATCATCTTGAGATATTGAGACCTGCTATCAAGAATTTTGGAGGGAGTGTGCAGGTGTTGT CTGTTGAAGGCAGTGACTGTCATGTGGATTATGTTGGACCTGACTCCATTGGATCAGGAATCAAAGCTGCTATCAAGGAG AAGTTTCCAGATATTCTCAATGTTACCTTCACCACCAGTGTATGAATTTTTCTGCACAGTTGAGTTGAGGCAGGTAAATA GTGGAAGAACAAGATTGATTAAGATGTGTGTGAATGCATATGCTTATAGATGGGTGCTTTGCTTTGCAATTGTTCTGTTG CTATACTATAGTTTCTCATTATGATCACTACACTTGCTAATTTGTGATTAGTCATACATTACAGGGACTAACATTGGGGA CTAAACCGAGTATTTCTTTCTTTTAATGACGAACTCGTCAGCGACTCATACTGTCAAAGACCAATATGATCATTCACTCA TTTTGCAATTATATCGATACTTCTCTCATGATGATTTCACTTTTCCGGATTATCTAAATTAGCCTATATATAAGTAACAT TAATTTGTGATTAACGATCGTGGTGTACCACTAAATATGGTTATACTAACATGATATTTTGTGACCTTTCACAAAAGTGA CGTATGGGAGAGGCATACACTATTATTCGGTGATCTATGTATCAAAATACTAGTTAAAATGTGTTACACGCATTACGCAT ACACCTCGGGCATGCATAATGGTTTACAAAGTGACTCTGCCTTTCACCTCACCATATCAATCTTTGAAGAATTGTTATTC TTTCATCTTTCTGTGAAGGCTCTACAATAAGTGCAGCTGATATCAGCTATAAAATGGGTAGACTGAGTGAGAGATGAATT TCCTTTTATATTTCCAATGAATCTGTGTTGCTTATTGTTATTGGCATAATTGATAATACACACACATTACATCATAGAAC TGGCAACAAGAACAGCATTACATACGAGATACATGGGAGTTTGGGGTTGGGAACAATTGGTACAAAATTCTTATTTATTG CACAGCCTCATCCCTTGTGAAACCTCAAATCTTATATTTATCTTCACCCAAACTTCGGTATATTTCATCTATATCAACCT GTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0757300.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGTCTCTAACCTCCATTTCTTCGATGATGAAATTCACAGTTCATCAAAACCTTCATCACCCTCACCGTCTTCATCA TCTGAATTTGGCAGTCACCAATTTCACAAAGAGAACCTCAAGCACCATCAGATTCGCTTCTTCAACCAATCAGAACCAGT CTTCTTCTTCTTCTCCTTCTCCGGGATTGTACTCCGCCGCGAAATTCGACCTCACCGCTCCCAACGTCGACCTCGTCCTC GAAGATGTCCGGCCATATCTCATCTCCGACGGCGGCAACGTCGAAGTCGTTTCCGTCGAGAACGGCGTCATTTCTCTCAA GCTCCAAGGAGCATGCGAAAGCTGCCCTAGCTCAACCACAACCATGAAATTGGGGATCGAGCGCGTTCTCAAGGAGAAAT TCGGAGATGCGGTTAAAGATATAGTGCAAGTCTATGATGAAGAACCAAAAGAAACCACTGTTGAGGCTGTGAATAATCAT CTTGAGATATTGAGACCTGCTATCAAGAATTTTGGAGGGAGTGTGCAGGTGTTGTCTGTTGAAGGCAGTGACTGTCATGT GGATTATGTTGGACCTGACTCCATTGGATCAGGAATCAAAGCTGCTATCAAGGAGAAGTTTCCAGATATTCTCAATGTTA CCTTCACCACCAGTGTATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0757300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASLTSISSMMKFTVHQNLHHPHRLHHLNLAVTNFTKRTSSTIRFASSTNQNQSSSSSPSPGLYSAAKFDLTAPNVDLVL EDVRPYLISDGGNVEVVSVENGVISLKLQGACESCPSSTTTMKLGIERVLKEKFGDAVKDIVQVYDEEPKETTVEAVNNH LEILRPAIKNFGGSVQVLSVEGSDCHVDYVGPDSIGSGIKAAIKEKFPDILNVTFTTSV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11178:SF15
15 216 202 1.2E-90 –
PANTHER
PTHR11178
15 216 202 1.2E-90 –
Gene3D
G3DSA:3.30.300.130
68 152 85 5.0E-27
IPR034904
SUPERFAMILY
SSF117916
75 146 72 5.01E-21
IPR034904
Pfam
PF01106
77 136 60 9.9E-23
IPR001075
SUPERFAMILY
SSF117916
151 216 66 1.53E-7
IPR034904
Gene3D
G3DSA:3.30.300.130
153 214 62 1.6E-7
IPR034904

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005506
Molecular function Iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
Subterm of
GO:0016226
Biological process Iron-sulfur cluster assembly The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster.
Subterm of
GO:0051536
Molecular function Iron-sulfur cluster binding Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0757300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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