Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0760300 |
| Transcript ID | LotjaGi1g1v0760300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | FBD-associated F-box protein; TAIR: AT5G44940.1 F-box/RNI-like superfamily protein; Swiss-Prot: sp|Q9FLA3|FBD42_ARATH Putative FBD-associated F-box protein At5g44940; TrEMBL-Plants: tr|I3SKC9|I3SKC9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0760300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133347676..133350418) extracted from Lotus japonicus Gifu genome v1.2.
CGAAGACATGCTCCAAACGATTTACAAAGAAGATGAGTTTTTTCAATTATTTTTCCGACAAATGATCTAGTTCAGACGGC AACACAAAGACATTGACTAATTTAAGGATTAACCCTATTAAATATAGATGAATGATGATAGTTGAGAACATCCCTCACTC ATGTAGGAGAGACATAAAGACACCCCCAAGGTTTTGTCCAAAACCCTCTCCACTTCCGCTCCCAAACAGGTCCCTCTCTC ACCCTCCCTAGCTCAAACTCATATTGGCATCGATCCCTTGAATTTTCTGTTCCCATCGCTCCTTGTTGATCTAGGATTTT GAGCTGCGCGAAGGATGAGTGGATCTCCGTCAGAGAGCTTCTCCTACGGCGGCGGCACCACCGTTCCTGAATCCGATCAC TGTTGCGACTGGATTAGCACCTTACCAGACGCAATCCTCTGTTTCATACTTTCCTTTCTCCCAACCAAGCAAGTCATTGC TACAAGCGTCCTCTCCAAGCGGTGGCAGCCACTGTGGCGCTCAGTCTCCACTCTGGACTTCGAAGTTGGGACTTACTATA ACAGAAGCAAAGAGGATTATGCTCGTCTTCTTCACTCTGTTTCTGCACTCATCCAGCATCTTCACCATCCCATCCACAAA TTCCGCATCAGGTGTATCAGCGTATCTCTTTTTTTTCCATTGCTTTTACATGTAAATTGGTCAGCTTAGTATTAGTCTCA CTGCTATCCGCTGTAGATAACTGGTTAACCCCGATGAATTAGTCTCACTGTTATCGGATAACTGGTTAACACTGATGAAT TAGTCTCACGGCTATCGGCTTTAGATAACTGGTTAATACCAATGAATTAGTCTCACTGCTATCGGGCAGATAACTAGCTA ACACTGAAAAAGAGATAAATGCAAATATGCTGATTCTTTTTGTATTGTTGTTTAACTTTTCTCACAATTTTTTTTAGATG TTGCCAACTCCAAGATTCTTTCCGCCCTTTCCAGTATATCTCTCCTTTTACTGATCCTGCCCATGTCACCAAATGGGTTA ATGCTGCTGTGCAACGCGGAGGACTTCAACACCTCCATCTCTGCCTCTCCTCCAAACTCGTGTATCGTGAACCACCCATC AACTTGTCTACCATCGTCATGTTCAGTTGTAAAACTCTGGTGGTTCTCAAGTTAGAGCATATCTGGTTGGAGCCAATTTC CTCTGTTGATCTACCATTACTGAAAGTCATGCATCTATATTATTTGACTTTCGCAGAACCTCGATGTCTCGCCAAGCTTC TTTCTGGATGTCCAATTCTTGAGGATTTTAAAGAATTTAAAATAAGATTTGAAGATGGTGAAGATGACACTGAGACTGAG TTTAAAACCATGCCCAAGTTGCTCAGAGCAGATATTTATAATTTTGATTCAAATATTATGCTGAAAGTGGTTAACAATGT CAAGTTTTTGCACATAGATAGGGTAATGTGATTTATGAATCATTACTTTTCTTTCCTAAGTGATATGGGATATTTGATTT CTTCTTCTTGTAACTCATGCAGATTGAAGAGAGTCTTGTACATGACACAGAACCCTACGATTTCCCCATGTTTCACAATT TGACCCATATGCAACTTGACTATATTGATTGCAATATTGATTGGTCTGATGTAGTGGAGTTGATCAAGAATTGCCCCAAG CTTCAAGTTCTTGTCATTTACCAGGTTTGATTAGAGGCTTAGAATGATTTCTATTTTTTGTCACTTCTTCAGTTCATTTA TTTACTGTGTGTTTGTTGTTAACAGCCAGAAGAAACAGCGAATTGGCAGTACCCACCATCTATATTACACCTTCAAAGAT GCACCAAAGATGATGAGTTTAAATTTGCAAGGTATATAGCGGAAGATTCGAACGAAGATGACAATATGCAGTGGGATTTT TATAAATTAACTAGTAGCCAACTAGAATTGGTAGATGAAAGTAGTTTCTACTATTCTTCATTTTTTTATACTTCCTTTTA ACTGTTAGCTAGCTACAACTATCTACAAGACCTCATCTTAATTTTCAAATTAATTGAACTTATTCGTTTATGATCATTAA TTGTAAATTTGAGATATAGTGCTGAAGTGTGAGGCAATTGTAGGTTAACTTCTAATATTATGCAAACCTCCATGGTAGTG GTAGGTAGGTGTGAATCAACTGCATCCTATTTACAAGCACAAATTCTTCTCAGGATAAGGCAAATTTCTAGTCTTAGTCA GTTTCTCCACATTCATTGAGAAATTTTTCTCAGGAAATCCACAATGAGGCTGTTCTCCCTAAAAGAGTCTTACGTAAACC ACTATATATGCATGATTAGTTTAAGCAAATATGGCACTGTAAGATTCTATAGAAAATTCCACAGCTCCAGAGTACTCAAA CCTTCATATATTTCTTCGATAATATGTATGATGCTTTGGTTTTATTGTTTTTGGATATGGAGTGTGTTTGATAACAACCG TTCCATATTGATGGTATCTAATCAAACATGTCATCTCCTGATGAATAGGTCATAGGCCTCTTTGTACTCTGCATTAATTA ACCATTGCTAAATATCGGTACATTAATTTGTGTTTGAACTAAAGATTAAGTTACCACCAAACATTATCAATTGACACAGG GGTCTCGAATTCAAGTTCCTATAAATGTAGTTGTGTTAAATACTTAGTAGAGAGAGCTTCAATACCCTCAGTATCTTACT TTGCTTGAATAAAATTATTTGAG
CDS sequence (LotjaGi1g1v0760300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAGTTGTAAAACTCTGGTGGTTCTCAAGTTAGAGCATATCTGGTTGGAGCCAATTTCCTCTGTTGATCTACCATT ACTGAAAGTCATGCATCTATATTATTTGACTTTCGCAGAACCTCGATGTCTCGCCAAGCTTCTTTCTGGATGTCCAATTC TTGAGGATTTTAAAGAATTTAAAATAAGATTTGAAGATGGTGAAGATGACACTGAGACTGAGTTTAAAACCATGCCCAAG TTGCTCAGAGCAGATATTTATAATTTTGATTCAAATATTATGCTGAAAGTGGTTAACAATGTCAAGTTTTTGCACATAGA TAGGATTGAAGAGAGTCTTGTACATGACACAGAACCCTACGATTTCCCCATGTTTCACAATTTGACCCATATGCAACTTG ACTATATTGATTGCAATATTGATTGGTCTGATGTAGTGGAGTTGATCAAGAATTGCCCCAAGCTTCAAGTTCTTGTCATT TACCAGCCAGAAGAAACAGCGAATTGGCAGTACCCACCATCTATATTACACCTTCAAAGATGCACCAAAGATGATGAGTT TAAATTTGCAAGGTATATAGCGGAAGATTCGAACGAAGATGACAATATGCAGTGGGATTTTTATAAATTAACTAGTAGCC AACTAGAATTGGTAGATGAAAGTAGTTTCTACTATTCTTCATTTTTTTATACTTCCTTTTAA
Protein sequence (LotjaGi1g1v0760300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFSCKTLVVLKLEHIWLEPISSVDLPLLKVMHLYYLTFAEPRCLAKLLSGCPILEDFKEFKIRFEDGEDDTETEFKTMPK LLRADIYNFDSNIMLKVVNNVKFLHIDRIEESLVHDTEPYDFPMFHNLTHMQLDYIDCNIDWSDVVELIKNCPKLQVLVI YQPEETANWQYPPSILHLQRCTKDDEFKFARYIAEDSNEDDNMQWDFYKLTSSQLELVDESSFYYSSFFYTSF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 188 | 188 | 1.6E-10 | ||
| PANTHER | 2 | 199 | 198 | 5.8E-30 | – | |
| PANTHER | 2 | 199 | 198 | 5.8E-30 | – | |
| SUPERFAMILY | 3 | 161 | 159 | 7.46E-9 | – | |
| Pfam | 28 | 52 | 25 | 3.9E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0760300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…