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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0764900 |
Transcript ID | LotjaGi1g1v0764900.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | NADH dehydrogenase (Ubiquinone) iron-sulfur protein 5-B; TAIR: AT2G47690.1 NADH-ubiquinone oxidoreductase-like protein; Swiss-Prot: sp|O82238|NDS5A_ARATH NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-A; TrEMBL-Plants: tr|I3T7D6|I3T7D6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0764900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133740919..133743148) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCATCAGGGTGGGGAATCACAGGAAACAAAGGTCGCTGCTACGATTTCTGGATCGACTTCAGCGAATGCATGTCTAC TTGCAGAGAGCCCAAGGACTGTGCTCTCCTCCGTGAAGATTACCTCGAGTGCCTCCACCATTCCAAAGAGGTACCCTTTC ATATCCATCTCAAAACCCTAATTAGCTTTTCCTCTGTTCGATTCGTTTACAAACCCTATCATTTTGATCCCAAATCCAAT TTTTGTGGTATCCTGCATTATTCTGATTCAACACAAATGTATCCATGTTTGGGATCCTGAATTGTTGATAACTAATTCAC TAGTATTAACTGAGAGGATTCAATTGAAAACAAATGCAGTGTTTTTTTAGCTCTCAAGAGAGAATTGAATTCACAAGTCA TTCATTTATACACTATTGTGAAAAGGGGCTTCATTTCACATTATAATTTTCGTTCATAGGTAAAGGGTATCTATCTAGCT AGCTACGTTTGAATAAATACATGTATTCTGTATATTGGAAATTAGAGGCACAGTAAAAGCCTTGTTGTTATGCTTATTTT TTGTGCATATTGTTGAGTGGCAGTTTAATAAGTCATGGAAGTAGTATCATGCGGCATAGGATTGTAAAAAGGAGAGTGAT GCTGTGGAAGGATTGAAAATTTAGAGTAATGCACATGATTCCTTCGTGCATTGCTGCTAATATGATTCTATCCGTCCACT CTATTTGACCCATGTTCGGCTATCAGGATATAGTGAGTATAAGATGTGGCTATTGATATTTCTGTAATCCATGCTTCCTT TCTGCCTGGTCTCAAATTTTGTATTTTGCCCTGCTAACATATTCATGTTCTATTTTCGTGATAGTTTTACTATCGAAGTT TAAAGATGGGTTTGATTTTTTAGAACTAACAAGTTTTGTTTCCGTTAAATTTTAAGAAGTTTTTTGTCTTTTCCCTCTAT CTATCTTGGTTTAATCTACATTCCATTTCAGTCTGTGAGTCAACTATGAAACAAAGTGTGATGATTTCTTAAGTGCTTCT TTTCATTACCATCTGTAACAACCTGGAGTTGCTTAGGGACCAACAATTTTCTTCTTAACAGAGTTTGTCTATGAACTAAG TGATATAGGCAAGTCAACTTTGAATTACAAACTGGAATTCACTTGATTTGACTGTTGGCCTTTTTAAGTTTCTAGTGTTA ATTCCTGCTCTTGGTTTGATGACCTATTTCATTTATATATCTTTTTGTAGCTTATAGGATGGTTGTAATCAATTAACAAG GGACAATAGGATATCTGTTGTCAGCTATTTTTCTCAACTTAATAGCTTAAAATTGTTCTTTGACCTCTTATAATTCTTCA ATAGCTTGTTAGGACACAACACAACTCTGAGTATTTAATATCCAGTGGTTGACAATTGTATGGGGTGGTTAGTTTCAGAA ATTTAGAGTGTGAATGGTTTTATGTTTGAAACTTGCAAACCACGGTTCGGGCAAAAGCTACAAGATACAAACTTCTACCC AAATTATGGTTTGTCACTTTTCAACGCCACACCAAATGTCCACTTAATGTTATCATATAAAGCTGTTCAATTATAATTCT AGAAACTTTCATATGGATCGGTGGACTCCAAATAGCTAGTCTAGCGCATGAATTCCAAACATCTGTTGAAAATTGGGAGG ACTATAATCATTATTAGGTTACCACACAATACAATCATAACTGATAAGCGTGATATGAAACTTGTCCTTTTCTTGTTGCT GTTATATGGTTAAAGCCTTTAGTTTTACCTTATTCTGTCAGCATACTCAAGTTTGTCAGCTATTTTTCTCAACTTTGAAG GTTTAGGAATTCTAGATTACCTAGACATCCTTCCTGTGATTGTTTTTTCTCAATGTTACTTTGGAGTTTGGAGGCAAAAG TATATCCTGGTTTATAGTTCAGGCCTTAAAAGCAGTTGAGAATGTCTTATTATTGCAAAAAATATCAAGTTTACTTTGCC CCAGCATTGTGAAAATTATCTCTTGCTCTAGATACAAACCTTGTTTTACACAACGTAGTAAATTTTATGACAACATATGT TGGTTTGGTTGGTAAATATATTACTGATATTGATTTTATTGCTTACTGCAGTTCCAACGAAGAAACCGTATTTACAAGGA GGAGCAGCGCAAACTAAGAGCTGCCTCCAGAAAAGGTCAGGATGAGGGGGTTGTTAGTGGACATCATTAG
CDS sequence (LotjaGi1g1v0764900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATCAGGGTGGGGAATCACAGGAAACAAAGGTCGCTGCTACGATTTCTGGATCGACTTCAGCGAATGCATGTCTAC TTGCAGAGAGCCCAAGGACTGTGCTCTCCTCCGTGAAGATTACCTCGAGTGCCTCCACCATTCCAAAGAGTTCCAACGAA GAAACCGTATTTACAAGGAGGAGCAGCGCAAACTAAGAGCTGCCTCCAGAAAAGGTCAGGATGAGGGGGTTGTTAGTGGA CATCATTAG
Protein sequence (LotjaGi1g1v0764900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASGWGITGNKGRCYDFWIDFSECMSTCREPKDCALLREDYLECLHHSKEFQRRNRIYKEEQRKLRAASRKGQDEGVVSG HH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 81 | 81 | 5.5E-53 | – | |
PANTHER | 1 | 81 | 81 | 5.5E-53 | – | |
ProSiteProfiles | 11 | 52 | 42 | 10.977 | – | |
Pfam | 12 | 65 | 54 | 2.0E-6 | ||
MobiDBLite | 62 | 82 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0764900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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