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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0766800 |
| Transcript ID | LotjaGi1g1v0766800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase-like protein; TAIR: AT3G17380.1 TRAF-like family protein; Swiss-Prot: sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12; TrEMBL-Plants: tr|I1JQJ7|I1JQJ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0766800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133963349..133967198) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAGGTTCCTTATATATAGTCCTTCACTACCTTGGAAAACCAAAAAATATATAGTCCTTCACTGTGCCTGCATTCAT CAATCATGGAAACCAAAACTGCTAAGTCAATGTTGTCTACAACACCCATGAAAGGTGTCATAGTCATACTCATACTTTTG TGCCTTTCTATTTCAAAGAATATGGGGCATCAATCAACGGATAAATGAATCTAGCAAATGCTCTTTTGAAAACATTATTT ATCATTGGCTTTTGTTTTTGCAAGAGTTAATTAAAATTACTCCATTGGGAGTTAATTAAAATTACCAATATGTTTAGTTT GGGTTCAATTATTCTTATTTAGTGGTATAATGTCTTTTACAGGAAGAGAAACTCGGCCAATTCATTACACATTCAGAATT GAGTCCTTCTCAATGCTTTCCAAGTTCTCAGTAGAAAAATGTGCTTCCGAAGAATTTGAAGCAGGGGGTTACAAATGGTA TGCATGTGCTTTTACACATTGTTAATTTTTCTTAATGTGTTAAATTCTTGCTCCTCCTATCCATTTTTTATGATTCCGTC TCTGTTGTATACATTCAATCTGATATCATCAATGGATCGATGTGCCCGCCGCGCAGGAGCCTATCTATTTATCCAACAGG GAACACAAAAGGAGAAGGAGAAGGTCATGTTTCTATTTATTTGGTGCTTATGGACACAAGCTCATTACCTGTTGATTGGG AAGTCAAAGCCATAGTCAATTTTTCTGCATACAATTTTCTTGATGATGAGTATGTTACAACTCAAGGTACATTATGAATT GATGAGTAAATTACTAATTCGCCAACATTTAAAGCTAACAACTACTTAACCAGTAATCAAGCATCATTAATTAATTTCTT TGTTTTAGCTTTTCATTCTTTAATTGTGCTATATGCTGGTGACTTCTAATAATTACAGGAAGAGTATGGTAAAAAATTTA ACAAGTTGAAATGATGCAGATACAAGTCTAAGGCGTTTCCATGCCCTGAAAACTGAGTGGGGGGTCCCCAAATTCATGGA CCTGGGCACATTTAATGACCCTTCAAAAGGATATCTGATTGATGATACTTGTGTTTTTGGAGCTGAGGTTTTCGTTGTCA AGAACACACATAAAGGCGATTGCTTATCAATGTTACATGGACCTGTGACTGTTTCCCATAGCTGGAAATTCAAATTTTCC CAATCAATAGAAAAGCACGAGTCTGAATCATTTTTTGGGGGAGACTACAAATGGTATATATGCATACACAAACGCTTCTA ACTTCCTTATCATCTAATCCTTTATTCTAAACTCAAAATCAATTGTGTGGAGTAGTTTCGTTTCAACATTGTTCTTTGGC TAAGTTGTTGTTTTTTTTTCCTCAGGAAACTCGTTTTATACCCCAATGGAATAGTTGAGGGAAAGGGTAATAGTATGTCA CTATTTTTAGTTTTGGATGTGTCAACTCTCCCACCCAACACCAAGCTTGTTGTCGATTGCATCCTGCGCGCAAAAGACCA ACTCAGAGAGCAACATGCTATACAAAAATGTAAGGCCATGTGAATGTAAATATATAAACAACTTTGACCTATACTTTTTT ATTTCATTTCATTTTTACTCACTTCCTTTTTCTTTTTCTTCACATCACTTATAATATCTCACATTTTTCTCTATTGTAGT CTGTCGAAAGTTCTCGGAGTCGGCTTCCGTGTGGGGTTCAAGACGGCTTGTGGCCTTGGCTAAAGTTAGAGATCTGAAGA ATGGGCTTTTGTTGGGTGATAGTTGCATCCTTGAAGCTGAATTTACAATTCTTGGCCTAATTAAACCAGGAATATGATAA TTAATATGTTTATACATGTATTATTGAATGCTACTGTCATTATGTTATTACTAATTAATTAGTAATCTGTGTACCACAGT TGAATTAAATTGTAATATATAAAAAATATTATTCGCAGAATAAGTATTTTAATGATTATAAATTAGTTAGAATTCATGAT ATTGGTATTAGAAATAGAAAGTGTGGTTGTGAAAGAGATTTTACCTGCATCAGGTTTAAGAAGACTCTTATTCTGTTTGC TTAAACTTAAAAGAAAAACAATTATTCTTATTGCTTAAACTTAAAGGAAAACACAATATGTCTGCATAACATACAAGCTC TGGATCCAAGGATACAATACATGCAAAATGTACTTAAGTTCATAGTTAGTTAACAATGGACTAAATTACAGCTAAAAATT ACAGAGCATAGCCATTCAACATACATAAAGAACAGAACTGATTAAATTGCTTTTTTATATGAGAATGTAATGTTGTTCAT CTATAAATACTCCAGTATGTACCAGACTACATAGAGTGATAAACTAAACAGTTCATGTCCACTGCTTTTGCACATAACAC TTTGATTTGACTCCCTTTACCAAAAGCTCAAGAGAGGCAGATCTAGGTTCTCCCTCAGCAAACATGCACATAGAAAACAC ATATTTCAGGTAAACTTAAAGAAGATAGAAAACCTGCAGGCTCATTTGAGTTCAGATACCACAGGCTCAAGCCTTCCCCA ATGCCACTGCATATTGTCATCTTCTTTAGAATCTTCTGTTATATACCTTGCAAATTTAAATCTTTCTTCGGTGCATCTTT TAAGATGTAACATAGATGGTGGGTATACTGTTTCTTGAGGTAGATCAGACACATGGTCATCAAAATATGGCTGTTAACAA TAAACACAAAATAAATAAATGAAATGAAGAAGTGATAAACACTAGCAATCATTCTATTCCTTTTAATCAAACCTGGTAAA TGACAAGAACTTGAAGCATGGGGCAAGACTTGAGCAATTCCACTACCTCAGACCAATCATTATTATAATAGTAATAGCTA TATTCAAGTTCAATGTGGGTCAAATTGTGAAACATGGGGAAAATGTAGGGGCTTGTGCCTTCAACAAGAATACCATCAAT CTGCATGAGTTACAAGAACAAGAAATCTAATATCACATTTCACTTAGTAAAGAAAAAAATAATGATTCATAAATTAAATC ACATTATACCTCATCTATGTGCAAAAACTTGACATTATTAACCACTTCCAACATAATCTTTGTATGGAAATCAGAAATAT CTGCTTTCAGCAACTTGGGCAAGGCTTTAAATTCTATGTCAGTGACAATATCTTCATCAATCAAGAAATCATTTTCAAAC AATAAATGACTTTCTTTAAAGTCCTTAAGAACTGGGCATCCATAAAGAAGCTTGGCCAGACAACCAAATTCTGAGAAAGT CAAACCTTGTAGATGGAGAACTTGAAGGGAGGGTAAGTAAACAGAGGAAATAGGTTCCAACTTGGTGATCTTGCTACCCC TCAACTTGAGAACCACCAGAGTTTTGCAACTGAAAATGGAAGACAAGTTGATGTGTGGTTCCCGATACTTGCGATCGATG GAGAGATCAAGGTGTTGAAGTCCTCCGCGTTGCACAACAGCGTTGACCCATGTGGTGATATTTGCAGGATCAGTGAAAGG AGAGATACACCTGAGGCGAAATTTGTAGATGGGATGGTGAAGATGAACGAGTGCAGAAACAGGCTGAACAAGACGAGCAT GACCCTGTTTGGCTCTGTCATAGTAGATGGAGTCATCCAAGTCGAGAGTGGGGACTGAACGCCACAGTGGCTGCCACCGC TTGGAGAGGACGCTGGTGGCAGCGGCTTGCTTGGTTGAGAGAAAAGAGAGGATGAAACAGAGGATTGAGTCTGGTAAGGT GCTAATCCAATCGCAACAGTGACCCTTTGTCATGTCCTGTTCGAACCTTCGCTCAAAACCTGGATCAGTTTATGATTCAC AGGAGTCAGA
CDS sequence (LotjaGi1g1v0766800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAACCAAAACTGCTAAGTCAATGTTGTCTACAACACCCATGAAAGGAAGAGAAACTCGGCCAATTCATTACACATT CAGAATTGAGTCCTTCTCAATGCTTTCCAAGTTCTCAGTAGAAAAATGTGCTTCCGAAGAATTTGAAGCAGGGGGTTACA AATGGAGCCTATCTATTTATCCAACAGGGAACACAAAAGGAGAAGGAGAAGGTCATGTTTCTATTTATTTGGTGCTTATG GACACAAGCTCATTACCTGTTGATTGGGAAGTCAAAGCCATAGTCAATTTTTCTGCATACAATTTTCTTGATGATGAGTA TGTTACAACTCAAGATACAAGTCTAAGGCGTTTCCATGCCCTGAAAACTGAGTGGGGGGTCCCCAAATTCATGGACCTGG GCACATTTAATGACCCTTCAAAAGGATATCTGATTGATGATACTTGTGTTTTTGGAGCTGAGGTTTTCGTTGTCAAGAAC ACACATAAAGGCGATTGCTTATCAATGTTACATGGACCTGTGACTGTTTCCCATAGCTGGAAATTCAAATTTTCCCAATC AATAGAAAAGCACGAGTCTGAATCATTTTTTGGGGGAGACTACAAATGGAAACTCGTTTTATACCCCAATGGAATAGTTG AGGGAAAGGGTAATAGTATGTCACTATTTTTAGTTTTGGATGTGTCAACTCTCCCACCCAACACCAAGCTTGTTGTCGAT TGCATCCTGCGCGCAAAAGACCAACTCAGAGAGCAACATGCTATACAAAAATTCTGTCGAAAGTTCTCGGAGTCGGCTTC CGTGTGGGGTTCAAGACGGCTTGTGGCCTTGGCTAAAGTTAGAGATCTGAAGAATGGGCTTTTGTTGGGTGATAGTTGCA TCCTTGAAGCTGAATTTACAATTCTTGGCCTAATTAAACCAGGAATATGA
Protein sequence (LotjaGi1g1v0766800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
METKTAKSMLSTTPMKGRETRPIHYTFRIESFSMLSKFSVEKCASEEFEAGGYKWSLSIYPTGNTKGEGEGHVSIYLVLM DTSSLPVDWEVKAIVNFSAYNFLDDEYVTTQDTSLRRFHALKTEWGVPKFMDLGTFNDPSKGYLIDDTCVFGAEVFVVKN THKGDCLSMLHGPVTVSHSWKFKFSQSIEKHESESFFGGDYKWKLVLYPNGIVEGKGNSMSLFLVLDVSTLPPNTKLVVD CILRAKDQLREQHAIQKFCRKFSESASVWGSRRLVALAKVRDLKNGLLLGDSCILEAEFTILGLIKPGI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 306 | 306 | 1.5E-141 | – | |
| PANTHER | 1 | 306 | 306 | 1.5E-141 | – | |
| Gene3D | 11 | 164 | 154 | 1.1E-38 | ||
| SUPERFAMILY | 20 | 163 | 144 | 9.97E-36 | ||
| ProSiteProfiles | 22 | 155 | 134 | 26.425 | ||
| CDD | 24 | 155 | 132 | 9.02454E-26 | ||
| SMART | 27 | 136 | 110 | 2.5E-8 | ||
| Pfam | 35 | 157 | 123 | 2.8E-12 | ||
| Gene3D | 173 | 303 | 131 | 3.5E-23 | ||
| SUPERFAMILY | 174 | 303 | 130 | 1.32E-21 | ||
| ProSiteProfiles | 175 | 299 | 125 | 18.857 | ||
| CDD | 177 | 300 | 124 | 4.527E-14 | ||
| SMART | 177 | 280 | 104 | 1.7E-4 | ||
| Pfam | 191 | 301 | 111 | 0.023 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0766800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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