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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0777800 |
| Transcript ID | LotjaGi1g1v0777800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein translocase subunit SecA; TAIR: AT3G04950.1 SEC-C motif protein; Swiss-Prot: sp|B9M3K9|SECA_GEODF Protein translocase subunit SecA; TrEMBL-Plants: tr|I3S032|I3S032_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0777800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:134992294..134996236) extracted from Lotus japonicus Gifu genome v1.2.
AGACAATTAGAACAGCCTAATATAAAATCTAATTATAAGAGCAAGTGAGGGAAAAAATTGGCTACTTGGTTCAATGGCTG CAACTCGCATCACAATCGCAAACAAGATTCATCATCGTCTTTCCCAGTACTCCAACTCCAGGTCCATCTTCTCCACTCCG CAGTTGCAGAATTCATGGGTCGACAAGGTCAAAACCGTCTTCACCGGCCAAAAAACCACCACCACCACTGAAAACCCCTC CTCCACCACCGACTCATTCACCCTCCTCCGTCAGTTCCATTTCAATTTCATCTCCAACATCATCATCATTCACCATTCTA GGTTTAACCAATTTCTTCCACAGATTTCGCCGATGAAATGAAGAAGGCACGGAAAATCGGAGCATTCAAGGATTACGTGG TTGGGAGAAGCAGCGAAGTCACTTTCACTACCGCATTCGAGAAAAACGAAGCCATTATTCGATTTCTCGGTGTTTTGGAT CCTACTGGAGAGGTTGGTTTCAATTCAACTCTCTGATAATTGGTTCATTTCCCATTACATTTTTCGGCATTGCTTGTTTA TTTGTTTAGGGTTTAGGGTTTATGATGATTTTGTGTTCAGAAGCTCCAGAGTGCTCAGAAACAAGCGGCCGCGAAGCATT GTAACTGCACCATTATTGATGTGGAGAATGCGCTTGCCAAGTTTACTTGGGCTAAAGAGGCGCAGAAGAAGATTGAGAAG TTGAAAGAAGAAGGAAAACCCATGCCAACAAGCATTGCTGAGGTAAGCAATGCTTCAATGCATCTTCCTCCTTAGAACAT AGCTAGTTCAGCTGGCTCAATTCGCCTTCTAATTGAGAAATTTTACTTTGTTGATTTGTTATTTATAGCTGTTAGATTAG ATGCTCATTGAAAGGTTAAAAAGAAAAGAAAAGAAATTATTGCTTTTGTATTATGGTTGCTGATCGGACAGAATCAAGCA ATCACTCAAGAGAGTGTTTTGTTGAGTAGGGAACGTTGGGGGAGGTAGTGGTCTTTCGTGCTTCGGGGCTGCACCTTTGG TCATATAGATATTCCGGTAGCGGCACCTGCAAAAAGACTATGATGCCCAAGTTAGAGCGTCGTTAAGAAGTGGGGAAGTG ATGTGAAGTATGCGTAACTTATGGTTCATGGTTCCTGCCTTTTATAGGGTTGGATTCATGGGTTTGGAGGTAGTAGTGTT TGAGGTTGGATGGGCTGTCATGAGGGGTCTGGGGTATGCGGATTAGGGAGGGCTGTTTGATTGCCTGACGTGCCGTTTAA TCGAACAAGTAGTAAGAAGCTTGCGTACAATTTTAGGTTTTTGAGTGCCACGCTCGTTTCTGGGGCAGAGAGCCGTTGAC TTTGTGGGTAGCACTGCTGGTTGTGGATTATGCTAAGTTACCTATTTGCAAATGGCAAGTGACTATGGGACCGAGATTTA TGTTGTTGAGTCACGGGTAATGGTGTTATCACTCAACACTCAGAAGGAGATCTGACTGGTATTTTGTATTGGGTTAACAG GAGGCGCACTTTTTGTGTAATCACGATTGTCGACAAGTGGTTATTGAGTGCCGATTGGGAGGTGCTGATTGGTCACCGAA CAATTGCCTTTGAAAGTTATTTGAGCTTATTTTATGGTATAAGCTCTTATGCAAGTGTTTGAGTAAACTTATGAATATAA CTTATGACCTATCTATAAGTTGTTTTAAGCTTATTTTTATAAGCTGCATAGATTAGCTTGTGATAAACGCTTATACCTAC CCATTAGCCATTTTGAGCTAATATCATTAAGTTTATCAAATTAGCTCATGAAAAAACACTTCATGCCATAAATAACCTAT TTACTCAAACAGACCTTGTTTCTACTCGAGAGTAGGTCTAGATTGGGCTTTTTTTGCCGGACATTTGGGGTTTGGTAAAT ATGCTTACCCAGGTGTCAAGCTTGGGTGAAGTCAACAATTTGTTTACCTAGATAATTAATGGAAGATCTGATGGCTTCTT AAACGGGTAGCAGAACTATATGTAGCCTAGAGAGATTGATGCATACCGGAATACTCAATATTATGTTGCTTACCTTAGCC TTGAAGCATTCTATATATTATACTCTACTTCTGTTAAGATCTATCAGATTTCAGAACTGCATCCTTATGTGTGTGAGTGT GTGATATTTTTTCTTGTCTTGTTAATATTTTTATTGCATTCAGAATTGCTTTCGTAGCTTTCATGATTTGGATATATGTA TCTAGTAACTTAAATGCAAATAAGTCAATAATCAACTTCTTTGTATATATGTGAGTTTAGTGAGTACTCTATGCATTAGG TAGCAAGATAAGAATATCACTTTGTTGTGTCAAATAATTTGGGTATATGCATATCCTATGCTTGTATGGGGTGTTGAATT TGAGTGTAACCATCCATGTTTATATTTCTTGTTCTCTAGGTCCAAAAGCTGGTTGGTTCAAGTCCATTGGATCATGCAAG GTCTAATTTGGCTCAAAGTGGACAAATTAGCAGGAATGCACCATGTCCATGTGGTTCAAAAAAGAGATATAAAAGGTTAA TTTTCTTCTCACTTTTTTTAAGAAACTTATTAGGCAACAAGCTGATTCCAGACTATTTTTTTGTTTTTTTTGTTCATCAA TTTAGACAAGTGAAATCTAGTTCACCCAAAAAAATATTATTAGGTTCACAAAAAAAAGACAAGTGAAATCTTACTGTCTA TCTATGCTTGCTATAGTTCTTGGGTTTTCTCAGCATTATCTTTAAACATTAGCTAAACATATATCTATACCTTACAACTT TTCTATTCATTCAATGGTATTAGAAGTTCGCTACATATTTTGGTGTTTTAATATGTATTGTAGTGTGAAAACTATTGCAT GTCTATTTTCAAACAGTTAACTCCGCGACATTTCTCTTTTTTTCTATTCTTTTCTGTCAAAAAAGGAAGAACTTATTTTG TCATGTTTAAGTTTTGAATAGTTATGATGAGATTTTTTTCGAAATTGATCAACTTCTGAATATTTACTTATGAAGATGCT GTGCAAAGGATTGAAGGAATTGAGAGGCTAACTATTAAACTGCAAGGTAGCCTGATCTATTTAGAGATGCTCACGCATTA CTGAACTGATCTGCAGTCATGTTTTCAGATGAAGCTGCTCTATGCACTCAGACTGCAAGCATTCTCACAGTTAACTGATG TTAGGATCAGACATTTTGCCAAATAGTTGCTTGAGTTTGTTAAGCTTTGTAATTTTTGAAGTGCTTATAGGGAGAACAAA ATCTTTTTGATCATTTGAAGAATACTTAGTTAGTTCTCTTCCTTCCCTAACTTCCCCTACATAAAATGGCAAGAGAACAA GAAAAGAAGTTTGTTGAAGCAATACTTTATTTTGTTGCTATGTCCTTTGGTGTACTTATATCTTGGAATTTCGGTTGCGC GATCCACATTTGAGTTAACTTGACAGAATCTTGTTTCTTCCTTTATGCGTTGTGATGTGTGTTTTCCCGAAAGGCAAACA GAAAACAAATGGGGCAAACATGTCTTTCATTGATCTGCCATCTACTCTATTTTTTAAGTTGACATATTTCAACTTATTTG TTCACTGATTTAAATCAACATTTTATTATTTTAATACATCTCTAATATTTGGGATTTGGTACTCAAGCTGCAATAATAGT AAGATCAATAGCGTGTTTGGTTTCCAATTGCACAACTCTTGAGCGTTGAAAATCATTCTACAATTAATTCTATAGTCAAA ATCAATTCTATAGATAGACTTAAGTGTGCATCTCACTAGAGTAAAAAATTATGAGTGTCAATTTATTCTTCGAAAAGAGA ATTTCATCCAAACATATTATGCATTTCTCATCAAAATCATGTTAAATGGATAGCTCCTCAGTTGCTTTCGCGTTGACACG TGAGTATCTCCATTAGATAGCAA
CDS sequence (LotjaGi1g1v0777800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCAACTCGCATCACAATCGCAAACAAGATTCATCATCGTCTTTCCCAGTACTCCAACTCCAGGTCCATCTTCTC CACTCCGCAGTTGCAGAATTCATGGGTCGACAAGGTCAAAACCGTCTTCACCGGCCAAAAAACCACCACCACCACTGAAA ACCCCTCCTCCACCACCGACTCATTCACCCTCCTCCATTTCGCCGATGAAATGAAGAAGGCACGGAAAATCGGAGCATTC AAGGATTACGTGGTTGGGAGAAGCAGCGAAGTCACTTTCACTACCGCATTCGAGAAAAACGAAGCCATTATTCGATTTCT CGGTGTTTTGGATCCTACTGGAGAGAAGCTCCAGAGTGCTCAGAAACAAGCGGCCGCGAAGCATTGTAACTGCACCATTA TTGATGTGGAGAATGCGCTTGCCAAGTTTACTTGGGCTAAAGAGGCGCAGAAGAAGATTGAGAAGTTGAAAGAAGAAGGA AAACCCATGCCAACAAGCATTGCTGAGGTCCAAAAGCTGGTTGGTTCAAGTCCATTGGATCATGCAAGGTCTAATTTGGC TCAAAGTGGACAAATTAGCAGGAATGCACCATGTCCATGTGGTTCAAAAAAGAGATATAAAAGATGCTGTGCAAAGGATT GA
Protein sequence (LotjaGi1g1v0777800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATRITIANKIHHRLSQYSNSRSIFSTPQLQNSWVDKVKTVFTGQKTTTTTENPSSTTDSFTLLHFADEMKKARKIGAF KDYVVGRSSEVTFTTAFEKNEAIIRFLGVLDPTGEKLQSAQKQAAAKHCNCTIIDVENALAKFTWAKEAQKKIEKLKEEG KPMPTSIAEVQKLVGSSPLDHARSNLAQSGQISRNAPCPCGSKKRYKRCCAKD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 213 | 205 | 3.0E-100 | – | |
| Gene3D | 174 | 212 | 39 | 6.3E-6 | – | |
| MobiDBLite | 180 | 204 | 25 | - | – | |
| MobiDBLite | 181 | 196 | 16 | - | – | |
| SUPERFAMILY | 192 | 212 | 21 | 4.58E-6 | – | |
| Pfam | 194 | 212 | 19 | 7.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0777800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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