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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0779500 |
| Transcript ID | LotjaGi1g1v0779500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF868 family protein; TAIR: AT5G28150.1 hypothetical protein (DUF868); TrEMBL-Plants: tr|I1NC75|I1NC75_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0779500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135151221..135153185) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATTAGTGCATCTTGCAAATACAACCCCTTTCTTTAAAAAGAGTAAAAAAAGGAAAAAGGGGAACTGATGCAAGAAA ATCTCAAAGTGACCTGGACTAATTGTGACGACTTGGAAAGTCTGAGTGCAACCCAGCTCACTAGCATGTGAAAAAGAAGC CATCATAGCCTTGTCAAAGGCGTAATTCAAGGAACCAAAACCATGACCCAATCAATAGTCCCTGAAAAGGCTTAGCAACT GGAGCTGATGATTGTATGAATAGAATTATTGTGTTTGCATCATTAAAAAGATGCAAAGCACTAGACTTTTTCCCAACATC TCACTTACAAAAACAGATAACAACACAACACATCATTATAAACACCCAAAATTTAAGAACCTCTCTTATCAAACTTGGCT CAACTCTCATCCATCCCAATTTCTTCTTCATGGGTTCCTTCCTCCTAGAGTTATAAATTGCAATTAACAATAGCAATTGC AGCCGCAATGATAAAAGGTTTTGGCCTCCGTGCTAGGCATCAAGACCACAATTGCGACCGTATCAACCCGCATTTTGCAA AGCAGGAGCCACAACCTCAATTTAAAATCTTGCTTCTTCACTCCTCCTAATCCTAGCATATTAACTAGATATGACCTGAA TATTTGAAAAAACACAAAGGAGCAACAACAAGCAACATGATCAAAGCTTGTTTCAGCCAACCCAAGTCACCCTCAAGCAG TAGCAGCAGCACCAATCAATTTCCACAAAATGTAGTAACCTGCATATACCAAACACAACTCTGTGACTCACCCACTTATG TCACACTCAGTTGGTCAAGAACCCTTTTCTCCCATTCCTTAACCATCCACGCCTCAGACATCTTCTCCACCACCATTTCC CTCAACCCATCAACCTTCTCCTTCTTCCAAACACAACACGGCTCAAAATGCATCCAAAACCAACACTTGAACAAAATCAA ACTCCACTGGAACTTCACCAAAACAGTATATACACAAAACTCTGCAGAGCCAGAGTCATGCTTCTACCTAGCAATCTCTC ACGGCGGGAAGCTCCAATTCTTGCTCGGCGACCTTGCTCTCAACTACTTGACACGGCGACAGCGCCACCTCAACATCACA ACCGGCACAAGCACGAGCAGAACAGAACACACCCCTGTTCTGCTTTCGAGAAGAGAGCACGTGTTTGGAAGCAGAAGCTA CGTTTCACGTGCCGAGTTCATGGGATCAAAACATGACATAGAGATTGAATGTTGTGAAGGGGCGCTGAGAGTGAAAGTGG ACAGTGAAACTCGATTGGTAGTGAAAAGGCTTGTGTGGAAATTCAGAGGGTACGAGAAGTTCTTCATCGATGGCATCGAA GTAGAGTTCTACTGGGACGTGTTGAGTTGGGTGGTTGGTAACAACGACACCAACAGCAATGGAAATCATGGACACGGTGT TTTTGTGTTTCAGGTAGGAGAAGGCACGGTGTGGCCGGAGATAGTGGGGGCAGAGAAGAGGTTGATGAGGAAGAGCGTGT CGTCGGGTTCAAGCGTGTTGCAGTGGGCAGAGGAGAACAGTGAGTGTGGTAGAACCTCTTCATCTTCTTCATCAACCAGA TCTTGTGATATTGGTGCCTTCTCTTTGTTGCTCTATGCTTGGACCATCAATTCTTAATGGATTTCATTTCATTTCTTCAT TGTTAATATTCTTTTTACAGTATTAATTATTTAATTTCAACTCTGAGTTGGTCTGGATTGGACTGAGATTTTTTCTTTGT TGATATGTATATGTATATTCTATTTTCTTTCTTGTACAATGTTGTTGAGCTTTTTAAGTATCTAATTCAGAACTCGAATT TCAAATGATGCCTATGGAGAAGTAATCTTAAAATCTCGAAGATTAGTCTCATGCTTATCAGGCGGGATATCTTCCAAAAC CAATTGCTGTTATGTTATCTATACTCATTCAATACACGTTATTTC
CDS sequence (LotjaGi1g1v0779500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAAAGCTTGTTTCAGCCAACCCAAGTCACCCTCAAGCAGTAGCAGCAGCACCAATCAATTTCCACAAAATGTAGT AACCTGCATATACCAAACACAACTCTGTGACTCACCCACTTATGTCACACTCAGTTGGTCAAGAACCCTTTTCTCCCATT CCTTAACCATCCACGCCTCAGACATCTTCTCCACCACCATTTCCCTCAACCCATCAACCTTCTCCTTCTTCCAAACACAA CACGGCTCAAAATGCATCCAAAACCAACACTTGAACAAAATCAAACTCCACTGGAACTTCACCAAAACAGTATATACACA AAACTCTGCAGAGCCAGAGTCATGCTTCTACCTAGCAATCTCTCACGGCGGGAAGCTCCAATTCTTGCTCGGCGACCTTG CTCTCAACTACTTGACACGGCGACAGCGCCACCTCAACATCACAACCGGCACAAGCACGAGCAGAACAGAACACACCCCT GTTCTGCTTTCGAGAAGAGAGCACGTGTTTGGAAGCAGAAGCTACGTTTCACGTGCCGAGTTCATGGGATCAAAACATGA CATAGAGATTGAATGTTGTGAAGGGGCGCTGAGAGTGAAAGTGGACAGTGAAACTCGATTGGTAGTGAAAAGGCTTGTGT GGAAATTCAGAGGGTACGAGAAGTTCTTCATCGATGGCATCGAAGTAGAGTTCTACTGGGACGTGTTGAGTTGGGTGGTT GGTAACAACGACACCAACAGCAATGGAAATCATGGACACGGTGTTTTTGTGTTTCAGGTAGGAGAAGGCACGGTGTGGCC GGAGATAGTGGGGGCAGAGAAGAGGTTGATGAGGAAGAGCGTGTCGTCGGGTTCAAGCGTGTTGCAGTGGGCAGAGGAGA ACAGTGAGTGTGGTAGAACCTCTTCATCTTCTTCATCAACCAGATCTTGTGATATTGGTGCCTTCTCTTTGTTGCTCTAT GCTTGGACCATCAATTCTTAA
Protein sequence (LotjaGi1g1v0779500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKACFSQPKSPSSSSSSTNQFPQNVVTCIYQTQLCDSPTYVTLSWSRTLFSHSLTIHASDIFSTTISLNPSTFSFFQTQ HGSKCIQNQHLNKIKLHWNFTKTVYTQNSAEPESCFYLAISHGGKLQFLLGDLALNYLTRRQRHLNITTGTSTSRTEHTP VLLSRREHVFGSRSYVSRAEFMGSKHDIEIECCEGALRVKVDSETRLVVKRLVWKFRGYEKFFIDGIEVEFYWDVLSWVV GNNDTNSNGNHGHGVFVFQVGEGTVWPEIVGAEKRLMRKSVSSGSSVLQWAEENSECGRTSSSSSSTRSCDIGAFSLLLY AWTINS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 15 | 15 | - | – | |
| PANTHER | 1 | 323 | 323 | 4.7E-122 | – | |
| PANTHER | 1 | 323 | 323 | 4.7E-122 | ||
| MobiDBLite | 7 | 21 | 15 | - | – | |
| Pfam | 24 | 322 | 299 | 8.6E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0779500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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