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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0779600 |
| Transcript ID | LotjaGi1g1v0779600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF868 family protein (DUF868); TAIR: AT5G28150.1 hypothetical protein (DUF868); Swiss-Prot: sp|Q11GS0|MURE_CHESB UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; TrEMBL-Plants: tr|A0A0S3SQ53|A0A0S3SQ53_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0779600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:135154694..135157357) extracted from Lotus japonicus Gifu genome v1.2.
ATTTATGACTTGGAATGAGTAATGTATGTATGGATGAGATGGATGTTAAGCTAAGCATGTAGTTGCAATGGTGATGAAAT GGAGCTTGTGGGATCCACGTCCTTCGTCTCCTACTAGGAACCGTTTCTGATCTCAAACATGCACTTTCACTGCCACCATA AATACACACACATTGACACAGTCGCAGGTACATGTCTGTCATCACTTTTCTTTGGATTTTTCTGAACCCAGTTATGCAAT TGCTATGCTATGCTCTGTGAGTGAGTGAGTGAGTGAGTTGTAATCTTCCTTCAATACCCAGTTTCTGTTTTCTCTGTATG TCACCATCTTGAGGTTCCTTTCTTTCCAATTCATAAATTTTCATTTTTGGCTTTTGGGTTTTATTTATTTATTGAAGAAT TTCAACTGTTAGTGGAGCAGAGCCAGGCATTGACAGTGAAAGAAGTTTGCTTTTTTTGTCTCTTTCCATTTCTCTGTGAT GTCTGAGCCCTTTCACTCCCTACATTCTCCAAATTTGTCTTCAATCCAATCCAATCCACCCATTTCTGAGATGGGGTTTT TGCTGTATCTCTAGGCCAAGTTCCCTTTTGCTAAGTTCTGCTTTTGTCTAAACTGGGCTCCATCTGTTTGCTGAAAAGCC CCAACCAAAAGAAGCTTGCTAATTGGATTGAATTGAATTGAGTTGAAGCTGATTTTTGCCAAAAAAAAAAATGAAGGATT TCCCTTCTTGTTTTGGGGAAAATGGAGTTCAGGTTGCAGATTCAAGCACCAGCAAAACTGCCCAGAATCTGGTTACTTGT GTTTATCAATGCAGGGTACATGGTAGGTCCTGCCTGATTACTGTCACTTGGAGTAAGAATTTGATGGGGCAAGGTCTCAG CGTTGGGATCGATGACTCTTCGAATCAGTGTCTTTGTAAGGTGGATGTTAAACCATGGATGTTCTCCAAGAGGAGAGGCT GCAAGAGTCTAGAGGCTTTTTCCTGTAAAATTGATGTGTTTTGGGACCTTTCTTCTGCTAAATTTGGTACTGGGCCTGAA CCGCTGCAGGGGTTTTATGTAGGAGTTGTTGTAGATCGGCAAATGGTTCTTCTTCTCGGGGATTTGAGGAGAGAAGCTTT CAAGAAGAGCAATGCCATGCCGTTACACTCCAATGCTGTTTTAGTTGGCAAGAAAGAACATGTTTCTGGTAAGAAGTTGT ATGGTACCAAGGCTGTGTTTTGCGACAATGGTCGAGTTCATGACCTTGTGATTGAATGTGACACTGCAAGTGGTAATGAT CCGTGCCTTGTGATTCGCCTAGACAGTAAAACTGTGATGCAAGTGAAGCGGTTGAGATGGAAATTCAGGGGGAATCATAC TATTCTTGTAGATGGTCTTGCTGTGGAAGTTTTCTGGGATGTCCATAATTGGCTCTTTAGTACAGCATCTCTTGCAGATG CTGTCTTTATGTTCAAGACGTGCCTCTCCTCAGATAGGCTGTGGGCTACCCAATCCCTTTCTAATGCAAATCTGCTGCAG TCGTCTTTCTCTGAGAGATTTTCTGATACCAGATTGCAGGGTCTTGGTTTCTCTCTTATTTTGTATGCTTGGAAGAACAT GTAGAGGTGAAGAAATACATCATATATTGAATACTAACAGACCTCTTAGTGAGTTTGGATATATCAACCATGTGATTGAA GTACAGTTGATTCAAAATGAGTCATTTTGTTTCTCTCTTTCCCCCTGTTAAATTCATATCCTCAATGTAGCAGAGCTATT TGAAGTTTTGAACAGATAGAGACTTTTTTTTTAATACAAATTTATCCACCTTCAAGAGTTAATTTTATGGTTCATATTAC TAAGTTACAATGTTTATAGTTTTGTTTTCTGTGTTATTCATGCAAGTATTGTGAATTGGTACCACAAGTCCTTACTTAGT ACTTACTTTTAGTTAGAGTGTAACATACCTATTATTCTCAGTTTGGGTTGTCATACATTTGAACTTTTAGCATTGAGAAT CCATATAATTACCAAGTACAAAAAACATTCTAAGCCAAAAAGTTTAATATGCTTAGGGGATCTGAGGTTGAAGAGGGTGG TAACGATAGAGAAAGATCATCAAATTACAGTGAATGTCTTCCTTTTTAGTAACCATTATAGACTTTATTCTATGCTTCAG GAAATTGAGATGGTGAAGCTATCAAAAGGCCATGAAGGGTTAATACTTGCTTATACTCTAAGCGTGGGGCATGGATGTGA ATAGTCCTTGCCTTTATAGGATTTCCTGCTTTAGTGCCTGACTACAATCAGCAAATTGGGTATGAGACTATATATTGCTA TAACTTGTGAATCATTGTTCTCTGTACAAAAACTTTCTGTTGCTGGATCTGAGATATTGCCCTCTCATGATCTCTAATAT ATCAATATTTATCTCTTTTAGCCCTGTAGCTTGTCTTTTGAACTTGTATGATTCTTTGATGCAAATTCTGCAGCAGTAAT GAATGAGCTTATTGGTTACTAACAACTGTAAAATTTTCCAAGACCTTTTATAAGGCTTCAATTTTAGTTGCAAAACTCAT GGAAGAAATCTGTTAACGATGCAGGTCAAACAGAAACCTCTATTGCTTATTTACATTTTGCTTATCATTCTTGGCTTAGA ATGTGTCAAAAATGATTTCACCGT
CDS sequence (LotjaGi1g1v0779600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGATTTCCCTTCTTGTTTTGGGGAAAATGGAGTTCAGGTTGCAGATTCAAGCACCAGCAAAACTGCCCAGAATCT GGTTACTTGTGTTTATCAATGCAGGGTACATGGTAGGTCCTGCCTGATTACTGTCACTTGGAGTAAGAATTTGATGGGGC AAGGTCTCAGCGTTGGGATCGATGACTCTTCGAATCAGTGTCTTTGTAAGGTGGATGTTAAACCATGGATGTTCTCCAAG AGGAGAGGCTGCAAGAGTCTAGAGGCTTTTTCCTGTAAAATTGATGTGTTTTGGGACCTTTCTTCTGCTAAATTTGGTAC TGGGCCTGAACCGCTGCAGGGGTTTTATGTAGGAGTTGTTGTAGATCGGCAAATGGTTCTTCTTCTCGGGGATTTGAGGA GAGAAGCTTTCAAGAAGAGCAATGCCATGCCGTTACACTCCAATGCTGTTTTAGTTGGCAAGAAAGAACATGTTTCTGGT AAGAAGTTGTATGGTACCAAGGCTGTGTTTTGCGACAATGGTCGAGTTCATGACCTTGTGATTGAATGTGACACTGCAAG TGGTAATGATCCGTGCCTTGTGATTCGCCTAGACAGTAAAACTGTGATGCAAGTGAAGCGGTTGAGATGGAAATTCAGGG GGAATCATACTATTCTTGTAGATGGTCTTGCTGTGGAAGTTTTCTGGGATGTCCATAATTGGCTCTTTAGTACAGCATCT CTTGCAGATGCTGTCTTTATGTTCAAGACGTGCCTCTCCTCAGATAGGCTGTGGGCTACCCAATCCCTTTCTAATGCAAA TCTGCTGCAGTCGTCTTTCTCTGAGAGATTTTCTGATACCAGATTGCAGGGTCTTGGTTTCTCTCTTATTTTGTATGCTT GGAAGAACATGTAG
Protein sequence (LotjaGi1g1v0779600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKDFPSCFGENGVQVADSSTSKTAQNLVTCVYQCRVHGRSCLITVTWSKNLMGQGLSVGIDDSSNQCLCKVDVKPWMFSK RRGCKSLEAFSCKIDVFWDLSSAKFGTGPEPLQGFYVGVVVDRQMVLLLGDLRREAFKKSNAMPLHSNAVLVGKKEHVSG KKLYGTKAVFCDNGRVHDLVIECDTASGNDPCLVIRLDSKTVMQVKRLRWKFRGNHTILVDGLAVEVFWDVHNWLFSTAS LADAVFMFKTCLSSDRLWATQSLSNANLLQSSFSERFSDTRLQGLGFSLILYAWKNM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 296 | 296 | 1.6E-160 | – | |
| PANTHER | 1 | 296 | 296 | 1.6E-160 | ||
| Pfam | 24 | 295 | 272 | 5.6E-104 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0779600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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